Wall clock time and date at job start Tue Mar 31 2020 11:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81401 * 102.99666 * 2 1 4 4 C 1.50703 * 109.47156 * 179.97438 * 3 2 1 5 5 C 1.33637 * 126.03234 * 89.99670 * 4 3 2 6 6 N 1.31785 * 114.49880 * 179.74036 * 5 4 3 7 7 C 1.29030 * 117.12133 * 359.97438 * 6 5 4 8 8 C 1.50701 * 124.91342 * 179.97438 * 7 6 5 9 9 N 1.46503 * 109.46855 * 89.97879 * 8 7 6 10 10 C 1.36940 * 120.00039 * 269.99777 * 9 8 7 11 11 H 1.07996 * 120.00146 * 146.09767 * 10 9 8 12 12 C 1.38810 * 119.99838 * 326.10021 * 10 9 8 13 13 N 1.31616 * 120.00193 * 336.58254 * 12 10 9 14 14 Si 1.86804 * 119.99901 * 156.58641 * 12 10 9 15 15 H 1.48500 * 109.47147 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47525 * 119.99787 * 14 12 10 17 17 H 1.48499 * 109.47024 * 239.99764 * 14 12 10 18 18 C 1.46503 * 119.99988 * 90.00234 * 9 8 7 19 19 C 1.52994 * 109.47128 * 89.50695 * 18 9 8 20 20 C 1.50699 * 109.47000 * 180.02562 * 19 18 9 21 21 O 1.20825 * 119.99750 * 0.02562 * 20 19 18 22 22 O 1.34231 * 120.00036 * 180.02562 * 20 19 18 23 23 S 1.70974 * 110.17051 * 0.02562 * 7 6 5 24 24 H 1.09000 * 109.47181 * 300.00031 * 1 2 3 25 25 H 1.08995 * 109.47197 * 60.00357 * 1 2 3 26 26 H 1.09003 * 109.46819 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47005 * 60.00048 * 3 2 1 28 28 H 1.08998 * 109.47166 * 300.00217 * 3 2 1 29 29 H 1.07999 * 122.75279 * 359.74018 * 5 4 3 30 30 H 1.09000 * 109.47369 * 209.97595 * 8 7 6 31 31 H 1.09000 * 109.47419 * 329.98204 * 8 7 6 32 32 H 0.97003 * 119.99802 * 180.02562 * 13 12 10 33 33 H 1.08998 * 109.47025 * 209.50863 * 18 9 8 34 34 H 1.08999 * 109.46872 * 329.50718 * 18 9 8 35 35 H 1.08998 * 109.47305 * 299.99996 * 19 18 9 36 36 H 1.08999 * 109.47226 * 60.00240 * 19 18 9 37 37 H 0.96703 * 116.99900 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9375 0.0006 5 6 4.5010 2.0260 -1.0797 6 7 5.7832 2.1770 -0.8157 7 6 6.1266 2.2214 0.4273 8 6 7.5387 2.3879 0.9266 9 7 7.8363 3.8138 1.0831 10 6 8.3663 4.5215 0.0374 11 1 8.1029 5.5597 -0.1006 12 6 9.2419 3.9043 -0.8453 13 7 9.9201 2.8424 -0.4650 14 14 9.4578 4.5811 -2.5730 15 1 8.5882 5.7717 -2.7505 16 1 10.8764 4.9686 -2.7792 17 1 9.0800 3.5407 -3.5630 18 6 7.5671 4.4825 2.3585 19 6 8.7991 4.3774 3.2595 20 6 8.5220 5.0648 4.5717 21 8 7.4489 5.5849 4.7663 22 8 9.4672 5.0992 5.5241 23 16 4.7479 2.0625 1.4258 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8030 2.2371 0.8900 28 1 1.8030 2.2371 -0.8899 29 1 4.1136 1.9776 -2.0867 30 1 7.6454 1.8867 1.8886 31 1 8.2320 1.9487 0.2092 32 1 10.5323 2.4114 -1.0818 33 1 7.3383 5.5327 2.1769 34 1 6.7179 4.0049 2.8470 35 1 9.0279 3.3273 3.4411 36 1 9.6484 4.8551 2.7710 37 1 9.2431 5.5519 6.3488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607401593.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:31 Heat of formation + Delta-G solvation = -50.650872 kcal Electronic energy + Delta-G solvation = -21483.026844 eV Core-core repulsion = 18092.326938 eV Total energy + Delta-G solvation = -3390.699906 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.14426 -40.52336 -37.91841 -36.97387 -33.93338 -33.89031 -31.80261 -29.92442 -29.46441 -26.93357 -26.29005 -24.64734 -23.20201 -21.59853 -20.19648 -19.33096 -18.98239 -18.42121 -17.43347 -17.30130 -16.98887 -16.67691 -16.13743 -15.84828 -15.53305 -15.15279 -14.95369 -14.83129 -14.53278 -14.30983 -14.05252 -13.93967 -13.71692 -13.27665 -13.15693 -13.02681 -12.73724 -12.47809 -12.41093 -12.21649 -12.11060 -12.05640 -11.72684 -11.52624 -11.11255 -10.58937 -10.38049 -10.06119 -9.59693 -8.78863 -8.72856 -7.92273 -5.47017 -0.36657 0.47589 0.88418 0.90812 1.29466 1.44645 1.51890 1.57092 1.64299 2.06409 2.26817 2.52240 3.22545 3.48235 3.69977 3.76958 3.95560 4.16762 4.22393 4.36548 4.37712 4.41202 4.48662 4.58291 4.69790 4.76361 4.81662 4.90502 5.02762 5.22420 5.32785 5.54209 5.68409 5.68717 6.37418 7.03780 7.05792 7.11052 7.72014 8.20992 9.07035 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.010763 B = 0.004399 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.802684 B = 6363.887679 C = 8498.860511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.310 6.310 3 C 0.015 3.985 4 C -0.232 4.232 5 C 0.046 3.954 6 N -0.507 5.507 7 C 0.059 3.941 8 C 0.204 3.796 9 N -0.573 5.573 10 C -0.269 4.269 11 H 0.054 0.946 12 C -0.008 4.008 13 N -0.898 5.898 14 Si 0.945 3.055 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.294 1.294 18 C 0.162 3.838 19 C -0.123 4.123 20 C 0.494 3.506 21 O -0.551 6.551 22 O -0.513 6.513 23 S 0.124 5.876 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.117 0.883 29 H 0.183 0.817 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.256 0.744 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.630 -2.787 6.587 15.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.083 6.083 3 C -0.135 4.135 4 C -0.355 4.355 5 C -0.109 4.109 6 N -0.222 5.222 7 C -0.221 4.221 8 C 0.073 3.927 9 N -0.292 5.292 10 C -0.399 4.399 11 H 0.072 0.928 12 C -0.207 4.207 13 N -0.541 5.541 14 Si 0.775 3.225 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.221 1.221 18 C 0.035 3.965 19 C -0.163 4.163 20 C 0.338 3.662 21 O -0.442 6.442 22 O -0.327 6.327 23 S 0.379 5.621 24 H 0.107 0.893 25 H 0.109 0.891 26 H 0.130 0.870 27 H 0.122 0.878 28 H 0.135 0.865 29 H 0.200 0.800 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -12.771 -3.767 6.912 15.002 hybrid contribution -0.818 1.552 -1.492 2.303 sum -13.589 -2.215 5.421 14.797 Atomic orbital electron populations 1.23458 0.90587 1.07598 1.06156 1.87542 1.11030 1.11531 1.98225 1.21559 0.89985 0.94578 1.07354 1.25283 0.99782 1.15086 0.95346 1.22018 0.87041 1.01019 1.00820 1.66338 1.18214 1.17281 1.20332 1.28995 1.02980 0.99024 0.91126 1.19742 0.86216 0.86536 1.00160 1.43872 1.70357 1.06283 1.08658 1.19090 1.20306 0.95776 1.04724 0.92820 1.25447 0.95142 0.98429 1.01690 1.69972 1.25557 1.23569 1.34990 0.85582 0.77024 0.77788 0.82156 1.20169 1.21229 1.22127 1.20760 0.93589 0.97125 0.84986 1.22007 1.03509 1.02068 0.88753 1.23699 0.80797 0.75855 0.85835 1.90668 1.26977 1.45448 1.81130 1.84562 1.45677 1.73442 1.29004 1.83545 0.99762 1.67010 1.11762 0.89270 0.89106 0.86996 0.87769 0.86455 0.80019 0.91338 0.88197 0.93470 0.93544 0.92716 0.87684 0.88327 0.71443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 10.76 113.37 1.22 -0.17 16 2 S -0.31 -6.97 22.36 -56.49 -1.26 -8.24 16 3 C 0.01 0.32 6.47 71.24 0.46 0.78 16 4 C -0.23 -7.05 5.86 24.64 0.14 -6.90 16 5 C 0.05 1.61 11.25 83.66 0.94 2.55 16 6 N -0.51 -22.19 10.54 -191.45 -2.02 -24.21 16 7 C 0.06 2.48 6.97 88.52 0.62 3.09 16 8 C 0.20 9.15 5.87 85.63 0.50 9.65 16 9 N -0.57 -26.58 2.44 -706.34 -1.72 -28.30 16 10 C -0.27 -14.08 9.48 84.03 0.80 -13.29 16 11 H 0.05 2.89 7.93 -2.91 -0.02 2.86 16 12 C -0.01 -0.40 4.94 84.86 0.42 0.02 16 13 N -0.90 -49.00 11.34 21.65 0.25 -48.76 16 14 Si 0.95 44.69 29.61 68.60 2.03 46.73 16 15 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 16 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 17 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 18 C 0.16 6.41 4.96 86.38 0.43 6.84 16 19 C -0.12 -4.25 6.13 29.85 0.18 -4.07 16 20 C 0.49 15.15 8.33 71.24 0.59 15.74 16 21 O -0.55 -19.53 16.74 21.97 0.37 -19.16 16 22 O -0.51 -12.09 13.42 -51.42 -0.69 -12.78 16 23 S 0.12 4.11 23.18 -56.49 -1.31 2.80 16 24 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.18 5.45 8.06 -2.91 -0.02 5.43 16 30 H 0.07 2.74 8.07 -2.39 -0.02 2.72 16 31 H 0.10 5.24 5.33 -2.39 -0.01 5.23 16 32 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 33 H 0.05 1.94 7.99 -2.39 -0.02 1.92 16 34 H 0.05 2.05 8.03 -2.39 -0.02 2.03 16 35 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 36 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 37 H 0.42 5.66 9.10 -74.06 -0.67 4.99 16 Total: -1.00 -66.17 351.80 2.37 -63.79 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.42 Total: 13.86 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 6.31 Total: 14.25 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -3.49 Total: -101.26 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.32 Total: -31.94 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: -2.86 SS G_CDS: -2.57 Total: -5.44 kcal Total: -66.17 2.37 -63.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607401593.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.144 kcal (2) G-P(sol) polarization free energy of solvation -66.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds