Wall clock time and date at job start Tue Mar 31 2020 11:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99941 * 2 1 4 4 H 1.48496 * 109.47023 * 269.99674 * 3 2 1 5 5 H 1.48498 * 109.47098 * 29.99994 * 3 2 1 6 6 H 1.48503 * 109.47041 * 149.99919 * 3 2 1 7 7 C 1.38815 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00290 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99863 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00062 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47007 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47261 * 60.00083 * 11 10 9 13 13 O 1.42905 * 109.47264 * 299.99994 * 11 10 9 14 14 C 1.53002 * 109.47143 * 179.97438 * 11 10 9 15 15 N 1.46503 * 109.47189 * 184.99897 * 14 11 10 16 16 C 1.34774 * 119.99721 * 180.02562 * 15 14 11 17 17 O 1.21556 * 120.00024 * 0.02562 * 16 15 14 18 18 C 1.47794 * 119.99646 * 179.97438 * 16 15 14 19 19 C 1.39620 * 120.12023 * 179.97438 * 18 16 15 20 20 C 1.37897 * 119.91898 * 179.97438 * 19 18 16 21 21 C 1.38478 * 120.15506 * 0.02562 * 20 19 18 22 22 Cl 1.73605 * 119.87454 * 179.97438 * 21 20 19 23 23 C 1.38689 * 120.24842 * 359.97438 * 21 20 19 24 24 F 1.35102 * 119.96479 * 179.97438 * 23 21 20 25 25 C 1.38135 * 120.07923 * 359.69820 * 23 21 20 26 26 H 0.96997 * 120.00179 * 359.97438 * 1 2 3 27 27 H 0.96998 * 119.99840 * 0.02562 * 9 7 2 28 28 H 1.08992 * 109.46764 * 60.00258 * 10 9 7 29 29 H 1.09002 * 109.47092 * 300.00139 * 10 9 7 30 30 H 0.96702 * 113.99404 * 300.00214 * 13 11 10 31 31 H 1.08997 * 109.47011 * 304.99871 * 14 11 10 32 32 H 1.09005 * 109.46847 * 64.99998 * 14 11 10 33 33 H 0.96993 * 119.99759 * 359.97438 * 15 14 11 34 34 H 1.08003 * 120.04088 * 359.97438 * 19 18 16 35 35 H 1.07997 * 119.91825 * 180.02562 * 20 19 18 36 36 H 1.08008 * 120.08577 * 180.27303 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1914 -0.0011 12 1 5.8797 -1.6198 0.8889 13 8 5.9616 -1.4420 -1.1679 14 6 6.3814 -3.5164 -0.0004 15 7 7.8172 -3.2513 0.1199 16 6 8.6922 -4.2761 0.1414 17 8 8.2900 -5.4204 0.0604 18 6 10.1406 -4.0086 0.2622 19 6 11.0493 -5.0684 0.2853 20 6 12.4000 -4.8140 0.3976 21 6 12.8571 -3.5100 0.4882 22 17 14.5590 -3.1981 0.6301 23 6 11.9603 -2.4522 0.4660 24 9 12.4125 -1.1823 0.5553 25 6 10.6058 -2.6953 0.3470 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3622 -0.0007 28 1 3.8485 -3.0426 -0.8908 29 1 3.8491 -3.0423 0.8891 30 1 5.7547 -1.8909 -1.9990 31 1 6.0525 -4.1254 0.8416 32 1 6.1870 -4.0486 -0.9316 33 1 8.1380 -2.3381 0.1834 34 1 10.6948 -6.0862 0.2152 35 1 13.1029 -5.6337 0.4150 36 1 9.9077 -1.8714 0.3252 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699065380.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:55 Heat of formation + Delta-G solvation = -122.495316 kcal Electronic energy + Delta-G solvation = -22776.856520 eV Core-core repulsion = 18814.784323 eV Total energy + Delta-G solvation = -3962.072197 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.078 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.13018 -41.42412 -39.69697 -38.88405 -37.64649 -36.22082 -35.48022 -33.49728 -32.63745 -31.71174 -30.70967 -27.42613 -25.27334 -24.24981 -23.58202 -22.85645 -21.70743 -19.91850 -19.57169 -18.13553 -17.90435 -17.55438 -17.25452 -17.11945 -16.94861 -16.53477 -16.30702 -15.94485 -15.45459 -15.43919 -15.05664 -14.69141 -14.52599 -14.31586 -14.15361 -13.95096 -13.41482 -13.38032 -13.21296 -13.04166 -12.81368 -12.60875 -12.24160 -12.10897 -11.88046 -11.83545 -11.38800 -11.02859 -10.93895 -10.36062 -10.19738 -9.90044 -9.31469 -8.03593 -5.37277 -0.68141 -0.12496 0.79439 1.39973 1.42936 1.49731 1.50218 1.90678 2.44915 2.48592 2.80550 3.26542 3.28696 3.39761 3.48116 3.58113 3.81556 3.91120 3.98822 4.09326 4.20571 4.29150 4.45734 4.60500 4.70818 4.73776 4.82029 4.93614 5.01590 5.15960 5.23615 5.40406 5.74109 6.19935 6.34960 6.75949 7.01443 7.07864 7.83339 8.02176 9.17638 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.024720 B = 0.002342 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.425677 B =11952.288206 C =12959.193423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.065 4.065 3 Si 0.960 3.040 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.252 1.252 7 C -0.237 4.237 8 H 0.057 0.943 9 N -0.753 5.753 10 C 0.123 3.877 11 C 0.104 3.896 12 H 0.111 0.889 13 O -0.564 6.564 14 C 0.099 3.901 15 N -0.705 5.705 16 C 0.559 3.441 17 O -0.566 6.566 18 C -0.108 4.108 19 C -0.056 4.056 20 C -0.079 4.079 21 C -0.058 4.058 22 Cl -0.042 7.042 23 C 0.092 3.908 24 F -0.130 7.130 25 C -0.103 4.103 26 H 0.258 0.742 27 H 0.369 0.631 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.389 0.611 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.414 0.586 34 H 0.160 0.840 35 H 0.178 0.822 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.407 -8.823 0.625 33.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.257 4.257 3 Si 0.787 3.213 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.176 1.176 7 C -0.368 4.368 8 H 0.075 0.925 9 N -0.399 5.399 10 C -0.004 4.004 11 C 0.044 3.956 12 H 0.128 0.872 13 O -0.371 6.371 14 C -0.025 4.025 15 N -0.357 5.357 16 C 0.347 3.653 17 O -0.446 6.446 18 C -0.111 4.111 19 C -0.075 4.075 20 C -0.097 4.097 21 C -0.086 4.086 22 Cl -0.013 7.013 23 C 0.071 3.929 24 F -0.108 7.108 25 C -0.122 4.122 26 H 0.067 0.933 27 H 0.203 0.797 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.238 0.762 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.252 0.748 34 H 0.178 0.822 35 H 0.196 0.804 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 32.264 -9.211 1.025 33.569 hybrid contribution -0.118 1.346 -0.307 1.385 sum 32.146 -7.866 0.718 33.102 Atomic orbital electron populations 1.69886 1.07175 1.26761 1.59550 1.25537 0.96136 1.01420 1.02565 0.85340 0.78491 0.79407 0.78055 1.20571 1.22407 1.17635 1.19042 0.82747 0.93483 1.41492 0.92463 1.42544 1.02295 1.04133 1.90941 1.21400 0.91009 0.88128 0.99870 1.22168 0.91773 0.91679 0.89983 0.87159 1.86527 1.85758 1.48262 1.16548 1.21948 0.79484 0.97292 1.03802 1.45740 1.06617 1.10070 1.73262 1.18268 0.86113 0.84695 0.76269 1.90802 1.80172 1.22328 1.51302 1.19798 0.93008 0.93718 1.04577 1.21492 0.91429 1.00332 0.94261 1.21238 0.96158 0.94634 0.97681 1.21465 0.86255 0.94861 1.05981 1.98418 1.10816 1.96083 1.95985 1.17333 0.91989 0.78774 1.04763 1.91566 1.89531 1.36169 1.93574 1.21403 0.93661 0.97830 0.99346 0.93306 0.79695 0.94548 0.94314 0.76177 0.89938 0.90222 0.74786 0.82237 0.80440 0.81703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.78 13.97 21.65 0.30 -62.48 16 2 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 3 Si 0.96 45.35 27.74 68.60 1.90 47.25 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.25 -10.72 6.52 99.48 0.65 -10.07 16 7 C -0.24 -13.29 10.47 84.03 0.88 -12.41 16 8 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 9 N -0.75 -33.57 5.30 -343.46 -1.82 -35.39 16 10 C 0.12 4.10 5.92 86.38 0.51 4.61 16 11 C 0.10 2.45 3.08 30.59 0.09 2.55 16 12 H 0.11 2.55 8.14 -2.38 -0.02 2.53 16 13 O -0.56 -13.42 13.03 -148.98 -1.94 -15.36 16 14 C 0.10 1.97 5.31 86.38 0.46 2.43 16 15 N -0.70 -12.09 5.45 -466.02 -2.54 -14.63 16 16 C 0.56 11.06 7.77 86.77 0.67 11.73 16 17 O -0.57 -15.14 16.34 -3.89 -0.06 -15.21 16 18 C -0.11 -1.62 5.87 -20.09 -0.12 -1.74 16 19 C -0.06 -0.70 9.59 22.52 0.22 -0.48 16 20 C -0.08 -0.77 9.81 22.25 0.22 -0.55 16 21 C -0.06 -0.75 6.33 22.43 0.14 -0.61 16 22 Cl -0.04 -0.55 28.60 -2.72 -0.08 -0.63 16 23 C 0.09 1.35 7.26 22.35 0.16 1.51 16 24 F -0.13 -2.24 16.83 44.97 0.76 -1.48 16 25 C -0.10 -1.34 9.52 22.57 0.21 -1.13 16 26 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 27 H 0.37 15.99 5.41 -92.71 -0.50 15.49 16 28 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.39 7.39 9.05 -74.06 -0.67 6.72 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.41 5.53 6.50 -92.71 -0.60 4.93 16 34 H 0.16 1.84 7.65 -2.91 -0.02 1.81 16 35 H 0.18 0.77 8.06 -2.91 -0.02 0.74 16 36 H 0.17 1.56 6.40 -2.91 -0.02 1.54 16 Total: -1.00 -73.06 334.58 -0.23 -73.29 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -0.67 Total: 22.08 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 3.92 Total: 2.56 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -4.06 Total: -112.50 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -2.00 Total: -30.57 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.76 Total: -1.48 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -73.06 -0.23 -73.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699065380.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.209 kcal (2) G-P(sol) polarization free energy of solvation -73.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds