Wall clock time and date at job start Tue Mar 31 2020 10:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 N 1.46506 * 109.46691 * 179.97438 * 3 2 1 5 5 C 1.39001 * 119.99800 * 180.02562 * 4 3 2 6 6 N 1.29576 * 125.40656 * 359.69633 * 5 4 3 7 7 N 1.37759 * 115.62907 * 179.79929 * 6 5 4 8 8 C 1.29641 * 115.60359 * 0.49909 * 7 6 5 9 9 S 1.76206 * 125.41415 * 179.75893 * 8 7 6 10 10 C 1.81401 * 102.99979 * 359.97438 * 9 8 7 11 11 C 1.50692 * 109.47031 * 180.02562 * 10 9 8 12 12 O 1.21279 * 120.00389 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99823 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99669 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.46797 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00357 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99873 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00219 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00018 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46807 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.47069 * 120.00240 * 19 17 15 22 22 H 1.48498 * 109.47296 * 240.00529 * 19 17 15 23 23 S 1.76035 * 125.40331 * 180.02562 * 5 4 3 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 26 26 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 27 27 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 28 28 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 31 31 H 0.96999 * 120.00076 * 0.02562 * 4 3 2 32 32 H 1.09005 * 109.46565 * 299.99279 * 10 9 8 33 33 H 1.08994 * 109.47079 * 59.99444 * 10 9 8 34 34 H 0.97000 * 120.00248 * 359.97438 * 13 11 10 35 35 H 1.08997 * 109.47499 * 299.99857 * 14 13 11 36 36 H 1.09002 * 109.47150 * 60.00632 * 14 13 11 37 37 H 0.97001 * 120.00334 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1999 2.6464 0.0013 6 7 3.6606 3.8245 -0.0042 7 7 4.5420 4.8833 0.0021 8 6 5.7989 4.5660 0.0025 9 16 7.1405 5.7084 0.0038 10 6 6.3052 7.3186 0.0036 11 6 7.3351 8.4187 0.0040 12 8 8.5163 8.1436 0.0049 13 7 6.9436 9.7083 0.0034 14 6 7.9449 10.7778 0.0044 15 6 7.2509 12.1155 0.0028 16 1 6.1721 12.1643 0.0017 17 6 7.9935 13.2773 0.0039 18 7 9.3072 13.2181 0.0059 19 14 7.1334 14.9355 0.0027 20 1 5.6626 14.7302 0.0012 21 1 7.5251 15.6972 1.2157 22 1 7.5285 15.6973 -1.2092 23 16 5.9525 2.8122 0.0014 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.9900 0.6025 0.0006 32 1 5.6826 7.4047 -0.8870 33 1 5.6811 7.4043 0.8930 34 1 5.9989 9.9284 0.0023 35 1 8.5673 10.6920 0.8951 36 1 8.5692 10.6918 -0.8849 37 1 9.8296 14.0354 0.0063 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017886877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:53 Heat of formation + Delta-G solvation = 16.305940 kcal Electronic energy + Delta-G solvation = -19850.218418 eV Core-core repulsion = 16494.714728 eV Total energy + Delta-G solvation = -3355.503690 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.077 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.60452 -38.88457 -37.27345 -34.31974 -33.81629 -32.44532 -30.82526 -29.95454 -26.97433 -26.82090 -24.72657 -22.68749 -22.48561 -20.96074 -20.13280 -19.55738 -17.58331 -17.16689 -16.66544 -16.23703 -15.92374 -15.57610 -15.41792 -15.04172 -15.01942 -14.19118 -13.85539 -13.58735 -13.51695 -13.37385 -12.95284 -12.80458 -12.51794 -12.02201 -11.91840 -11.71958 -11.66850 -11.24882 -11.14430 -10.99693 -10.92987 -10.64144 -10.34512 -10.19833 -9.77137 -9.43581 -9.35726 -8.92124 -8.79465 -8.02848 -7.70869 -6.19827 -4.27083 0.14143 0.61856 0.87555 1.20408 2.00291 2.14495 2.66055 3.11766 3.22792 3.30095 3.33156 3.91064 4.20296 4.32848 4.38363 4.38849 4.67295 4.93681 5.05157 5.05928 5.11000 5.16971 5.18779 5.23619 5.43457 5.44364 5.53481 5.64309 6.26088 6.66426 7.20796 7.27258 7.44884 7.59689 7.84151 7.91386 8.46327 8.67677 8.92469 9.39367 10.90302 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.028175 B = 0.002011 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.537626 B =13918.393214 C =14875.577128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.131 3.869 4 N -0.690 5.690 5 C 0.312 3.688 6 N -0.355 5.355 7 N -0.265 5.265 8 C 0.005 3.995 9 S 0.096 5.904 10 C -0.148 4.148 11 C 0.517 3.483 12 O -0.542 6.542 13 N -0.701 5.701 14 C 0.249 3.751 15 C -0.545 4.545 16 H 0.065 0.935 17 C 0.064 3.936 18 N -0.884 5.884 19 Si 0.905 3.095 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 S 0.066 5.934 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.415 0.585 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.395 0.605 35 H 0.031 0.969 36 H 0.031 0.969 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.929 -27.910 -0.005 31.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C 0.006 3.994 4 N -0.333 5.333 5 C -0.072 4.072 6 N -0.192 5.192 7 N -0.094 5.094 8 C -0.394 4.394 9 S 0.323 5.677 10 C -0.302 4.302 11 C 0.299 3.701 12 O -0.421 6.421 13 N -0.349 5.349 14 C 0.129 3.871 15 C -0.583 4.583 16 H 0.083 0.917 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 S 0.299 5.701 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.253 0.747 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.228 0.772 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.338 -27.798 -0.008 30.413 hybrid contribution -2.061 0.929 0.001 2.261 sum -14.399 -26.869 -0.006 30.484 Atomic orbital electron populations 1.21671 0.94096 1.02363 1.02601 1.21740 0.97291 0.95456 1.02905 1.21554 0.77398 0.97553 1.02925 1.43911 1.06158 1.02253 1.80996 1.25948 0.91883 0.91770 0.97580 1.75080 1.24148 0.93324 1.26650 1.75461 0.96825 1.20714 1.16352 1.30852 1.01835 0.99696 1.07052 1.86419 0.97631 0.93719 1.89930 1.23934 1.02949 0.94330 1.08945 1.19413 0.88463 0.83773 0.78421 1.90716 1.17485 1.82868 1.51024 1.46390 1.11839 1.05186 1.71480 1.19216 0.87062 0.82754 0.98105 1.21250 0.93447 0.90245 1.53405 0.91698 1.24947 0.94843 0.99573 0.94596 1.69977 1.04708 1.28704 1.48771 0.86341 0.79608 0.83085 0.77774 1.19601 1.20769 1.20763 1.85548 1.03568 1.01714 1.79264 0.91993 0.92159 0.92164 0.91131 0.91132 0.91159 0.91172 0.74728 0.86068 0.86060 0.77226 0.95145 0.95148 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.91 37.16 0.37 -0.15 16 2 C -0.14 -0.48 6.05 -26.73 -0.16 -0.64 16 3 C 0.13 0.81 5.98 -4.04 -0.02 0.78 16 4 N -0.69 -4.87 5.73 -60.83 -0.35 -5.22 16 5 C 0.31 3.38 8.42 -87.39 -0.74 2.64 16 6 N -0.35 -4.99 11.68 30.85 0.36 -4.63 16 7 N -0.26 -3.98 11.62 31.12 0.36 -3.62 16 8 C 0.01 0.07 7.82 51.84 0.41 0.48 16 9 S 0.10 1.38 21.30 -107.50 -2.29 -0.91 16 10 C -0.15 -2.18 6.03 36.00 0.22 -1.96 16 11 C 0.52 10.02 7.85 -10.99 -0.09 9.93 16 12 O -0.54 -12.52 15.86 5.56 0.09 -12.43 16 13 N -0.70 -14.34 5.55 -61.47 -0.34 -14.68 16 14 C 0.25 6.46 5.43 -5.19 -0.03 6.43 16 15 C -0.55 -14.59 9.28 -34.44 -0.32 -14.91 16 16 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.88 -25.76 13.29 55.43 0.74 -25.03 16 19 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 S 0.07 0.69 23.39 -107.50 -2.51 -1.83 16 24 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.42 1.78 8.60 -40.82 -0.35 1.43 16 32 H 0.12 1.59 8.14 -51.92 -0.42 1.17 16 33 H 0.12 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.39 6.90 8.32 -40.82 -0.34 6.56 16 35 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -33.27 353.89 -8.97 -42.25 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -4.87 Total: 0.77 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -0.46 Total: 4.28 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.77 Total: -53.17 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.09 Total: -12.43 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -4.80 Total: -2.73 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.27 -8.97 -42.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017886877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.552 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds