Wall clock time and date at job start Tue Mar 31 2020 10:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 N 1.46506 * 109.46691 * 179.97438 * 3 2 1 5 5 C 1.39001 * 119.99800 * 180.02562 * 4 3 2 6 6 N 1.29576 * 125.40656 * 359.69633 * 5 4 3 7 7 N 1.37759 * 115.62907 * 179.79929 * 6 5 4 8 8 C 1.29641 * 115.60359 * 0.49909 * 7 6 5 9 9 S 1.76206 * 125.41415 * 179.75893 * 8 7 6 10 10 C 1.81401 * 102.99979 * 359.97438 * 9 8 7 11 11 C 1.50692 * 109.47031 * 180.02562 * 10 9 8 12 12 O 1.21279 * 120.00389 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99823 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99669 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.46797 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00357 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99873 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00219 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00018 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46807 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.47069 * 120.00240 * 19 17 15 22 22 H 1.48498 * 109.47296 * 240.00529 * 19 17 15 23 23 S 1.76035 * 125.40331 * 180.02562 * 5 4 3 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 26 26 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 27 27 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 28 28 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 31 31 H 0.96999 * 120.00076 * 0.02562 * 4 3 2 32 32 H 1.09005 * 109.46565 * 299.99279 * 10 9 8 33 33 H 1.08994 * 109.47079 * 59.99444 * 10 9 8 34 34 H 0.97000 * 120.00248 * 359.97438 * 13 11 10 35 35 H 1.08997 * 109.47499 * 299.99857 * 14 13 11 36 36 H 1.09002 * 109.47150 * 60.00632 * 14 13 11 37 37 H 0.97001 * 120.00334 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1999 2.6464 0.0013 6 7 3.6606 3.8245 -0.0042 7 7 4.5420 4.8833 0.0021 8 6 5.7989 4.5660 0.0025 9 16 7.1405 5.7084 0.0038 10 6 6.3052 7.3186 0.0036 11 6 7.3351 8.4187 0.0040 12 8 8.5163 8.1436 0.0049 13 7 6.9436 9.7083 0.0034 14 6 7.9449 10.7778 0.0044 15 6 7.2509 12.1155 0.0028 16 1 6.1721 12.1643 0.0017 17 6 7.9935 13.2773 0.0039 18 7 9.3072 13.2181 0.0059 19 14 7.1334 14.9355 0.0027 20 1 5.6626 14.7302 0.0012 21 1 7.5251 15.6972 1.2157 22 1 7.5285 15.6973 -1.2092 23 16 5.9525 2.8122 0.0014 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.9900 0.6025 0.0006 32 1 5.6826 7.4047 -0.8870 33 1 5.6811 7.4043 0.8930 34 1 5.9989 9.9284 0.0023 35 1 8.5673 10.6920 0.8951 36 1 8.5692 10.6918 -0.8849 37 1 9.8296 14.0354 0.0063 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000017886877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:52 Heat of formation + Delta-G solvation = -7.776908 kcal Electronic energy + Delta-G solvation = -19851.262728 eV Core-core repulsion = 16494.714728 eV Total energy + Delta-G solvation = -3356.548000 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.077 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57620 -40.52192 -37.91214 -36.22642 -34.43687 -34.33242 -31.84717 -31.27352 -28.77456 -27.52490 -25.59309 -24.68635 -22.93170 -21.85860 -21.67922 -20.54995 -19.09459 -18.25404 -17.76560 -17.60373 -17.02336 -16.90461 -16.69953 -16.28819 -15.91987 -15.81574 -15.06549 -14.64845 -14.50163 -14.26248 -14.01838 -14.00688 -13.94916 -13.50900 -12.92038 -12.86223 -12.75342 -12.55087 -12.23639 -12.14404 -12.05936 -11.68744 -11.68261 -11.45992 -11.15014 -11.06888 -10.82783 -10.66342 -9.93778 -9.68723 -8.76901 -8.29359 -6.45450 -0.79433 -0.31401 -0.04530 0.17573 0.86416 1.19470 1.44457 1.44754 1.53802 1.58385 1.96751 2.28074 2.48074 3.06064 3.49949 3.73234 3.84950 3.95278 4.01953 4.05084 4.25058 4.34386 4.64372 4.71647 4.80525 5.08880 5.13886 5.22560 5.23726 5.34511 5.42425 5.57731 5.61991 5.83044 6.12251 6.63434 6.73307 6.94719 7.19559 7.33971 8.82793 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.028175 B = 0.002011 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.537626 B =13918.393214 C =14875.577128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.130 3.870 4 N -0.671 5.671 5 C 0.312 3.688 6 N -0.391 5.391 7 N -0.284 5.284 8 C -0.011 4.011 9 S 0.079 5.921 10 C -0.133 4.133 11 C 0.519 3.481 12 O -0.582 6.582 13 N -0.696 5.696 14 C 0.265 3.735 15 C -0.557 4.557 16 H 0.084 0.916 17 C 0.006 3.994 18 N -0.929 5.929 19 Si 0.983 3.017 20 H -0.255 1.255 21 H -0.279 1.279 22 H -0.279 1.279 23 S 0.119 5.881 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.431 0.569 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.412 0.588 35 H -0.005 1.005 36 H -0.005 1.005 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.137 -29.357 -0.006 33.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C 0.004 3.996 4 N -0.315 5.315 5 C -0.072 4.072 6 N -0.230 5.230 7 N -0.114 5.114 8 C -0.411 4.411 9 S 0.305 5.695 10 C -0.286 4.286 11 C 0.304 3.696 12 O -0.463 6.463 13 N -0.346 5.346 14 C 0.143 3.857 15 C -0.595 4.595 16 H 0.102 0.898 17 C -0.194 4.194 18 N -0.567 5.567 19 Si 0.807 3.193 20 H -0.178 1.178 21 H -0.205 1.205 22 H -0.205 1.205 23 S 0.352 5.648 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.271 0.729 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.248 0.752 35 H 0.013 0.987 36 H 0.013 0.987 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.599 -29.322 -0.009 32.755 hybrid contribution -1.396 1.164 0.002 1.818 sum -15.995 -28.157 -0.007 32.383 Atomic orbital electron populations 1.21689 0.94008 1.02905 1.02273 1.21692 0.97202 0.93534 1.03971 1.21645 0.76634 0.99318 1.01956 1.44117 1.06673 1.01716 1.78959 1.26211 0.92654 0.92184 0.96111 1.75046 1.24434 0.94146 1.29416 1.75404 0.97394 1.22076 1.16479 1.30742 1.01235 1.01331 1.07812 1.86462 0.98381 0.93876 1.90734 1.23711 1.01283 0.92709 1.10876 1.20076 0.88847 0.84144 0.76576 1.90698 1.19749 1.83540 1.52346 1.46082 1.11754 1.04827 1.71941 1.18658 0.87591 0.84730 0.94770 1.21646 0.94448 0.90471 1.52936 0.89797 1.26014 0.95460 1.04055 0.93873 1.70127 1.06652 1.30022 1.49903 0.85130 0.79087 0.77455 0.77664 1.17820 1.20483 1.20472 1.85335 1.02378 0.98618 1.78460 0.90991 0.92532 0.92539 0.90036 0.90040 0.92165 0.92174 0.72901 0.84068 0.84058 0.75199 0.98720 0.98726 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 71.98 0.71 -0.06 16 2 C -0.13 -0.59 6.05 30.60 0.19 -0.40 16 3 C 0.13 1.38 5.98 86.38 0.52 1.90 16 4 N -0.67 -7.98 5.73 -346.37 -1.98 -9.96 16 5 C 0.31 6.22 8.42 179.22 1.51 7.73 16 6 N -0.39 -10.60 11.68 -56.30 -0.66 -11.26 16 7 N -0.28 -8.28 11.62 -55.47 -0.64 -8.92 16 8 C -0.01 -0.28 7.82 130.57 1.02 0.74 16 9 S 0.08 2.24 21.30 -56.49 -1.20 1.04 16 10 C -0.13 -3.79 6.03 71.23 0.43 -3.36 16 11 C 0.52 20.29 7.85 87.65 0.69 20.98 16 12 O -0.58 -27.75 15.86 -3.02 -0.05 -27.80 16 13 N -0.70 -28.76 5.55 -466.78 -2.59 -31.35 16 14 C 0.27 14.26 5.43 85.63 0.46 14.73 16 15 C -0.56 -29.95 9.28 25.60 0.24 -29.72 16 16 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 17 C 0.01 0.32 5.46 84.66 0.46 0.78 16 18 N -0.93 -55.41 13.29 21.45 0.28 -55.12 16 19 Si 0.98 42.20 29.54 68.60 2.03 44.23 16 20 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 22 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 23 S 0.12 2.26 23.39 -56.49 -1.32 0.94 16 24 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 25 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.08 0.24 8.14 -2.39 -0.02 0.23 16 28 H 0.08 0.24 8.14 -2.39 -0.02 0.23 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.43 2.41 8.60 -92.71 -0.80 1.61 16 32 H 0.14 3.50 8.14 -2.39 -0.02 3.48 16 33 H 0.14 3.50 8.14 -2.39 -0.02 3.48 16 34 H 0.41 14.04 8.32 -92.71 -0.77 13.27 16 35 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 36 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 37 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -73.85 353.89 -0.37 -74.22 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -0.45 Total: 10.69 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 6.23 Total: 13.31 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -5.59 Total: -116.62 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.05 Total: -27.80 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -2.52 Total: 1.97 kcal Total: -73.85 -0.37 -74.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017886877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.439 kcal (2) G-P(sol) polarization free energy of solvation -73.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds