Wall clock time and date at job start Tue Mar 31 2020 11:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 N 1.46504 * 109.46883 * 240.00538 * 2 1 3 5 5 C 1.46500 * 120.00157 * 59.99987 * 4 2 1 6 6 C 1.50698 * 109.47329 * 84.99761 * 5 4 2 7 7 H 1.08002 * 119.99453 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00124 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99968 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00106 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47119 * 60.00175 * 10 8 6 12 12 H 1.48499 * 109.47239 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47321 * 299.99995 * 10 8 6 14 14 S 1.65604 * 119.99495 * 239.99479 * 4 2 1 15 15 O 1.42103 * 106.39826 * 203.54152 * 14 4 2 16 16 O 1.42096 * 106.40403 * 336.46392 * 14 4 2 17 17 C 1.76198 * 107.21445 * 90.00421 * 14 4 2 18 18 C 1.35483 * 126.07765 * 269.68638 * 17 14 4 19 19 N 1.34961 * 108.98706 * 179.83538 * 18 17 14 20 20 H 0.97001 * 125.63649 * 180.15465 * 19 18 17 21 21 C 1.37697 * 108.72695 * 0.43235 * 19 18 17 22 22 C 1.46497 * 126.26472 * 179.73257 * 21 19 18 23 23 O 1.21617 * 120.00137 * 180.02562 * 22 21 19 24 24 O 1.34892 * 119.99727 * 0.02562 * 22 21 19 25 25 C 1.37996 * 107.47390 * 359.74052 * 21 19 18 26 26 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 29 29 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 30 30 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 31 31 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 32 32 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 33 33 H 1.08999 * 109.46508 * 204.99952 * 5 4 2 34 34 H 1.09000 * 109.46954 * 324.99588 * 5 4 2 35 35 H 0.97005 * 120.00163 * 179.97438 * 9 8 6 36 36 H 1.08005 * 125.51034 * 359.97438 * 18 17 14 37 37 H 0.96697 * 116.99801 * 179.97438 * 24 22 21 38 38 H 1.08002 * 126.51331 * 179.97438 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 1.6644 -0.1899 -2.5268 6 6 2.6337 0.8908 -2.9312 7 1 3.4332 1.1764 -2.2636 8 6 2.5000 1.5148 -4.1533 9 7 1.5267 1.1665 -4.9664 10 14 3.7019 2.8538 -4.6549 11 1 5.0785 2.2975 -4.6850 12 1 3.3438 3.3605 -6.0041 13 1 3.6395 3.9676 -3.6747 14 16 2.9705 -2.0369 -1.0444 15 8 3.7119 -2.1423 -2.2521 16 8 3.5795 -1.9553 0.2369 17 6 1.8962 -3.4327 -0.9966 18 6 1.3564 -3.9863 0.1159 19 7 0.5863 -5.0343 -0.2445 20 1 0.0847 -5.6020 0.3614 21 6 0.6351 -5.1685 -1.6141 22 6 -0.0557 -6.1858 -2.4103 23 8 0.0687 -6.1991 -3.6201 24 8 -0.8297 -7.1078 -1.8017 25 6 1.4541 -4.1695 -2.0993 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.7104 -1.0072 -3.2465 34 1 0.6539 0.2181 -2.5045 35 1 1.4323 1.6058 -5.8261 36 1 1.5148 -3.6430 1.1276 37 1 -1.2656 -7.7585 -2.3688 38 1 1.7059 -3.9909 -3.1343 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036133546.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:15 Heat of formation + Delta-G solvation = -120.314075 kcal Electronic energy + Delta-G solvation = -25179.732486 eV Core-core repulsion = 21343.258886 eV Total energy + Delta-G solvation = -3836.473600 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.097 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60957 -39.78732 -36.87638 -36.45908 -36.31882 -35.06366 -32.69958 -31.57609 -30.56310 -29.96429 -26.91131 -26.49401 -24.33285 -22.73534 -22.05532 -20.56789 -20.21621 -19.50761 -17.92393 -17.73624 -16.91640 -16.44037 -16.00343 -15.85375 -15.47250 -15.13562 -14.39456 -14.34501 -13.81009 -13.59188 -13.57874 -13.50551 -13.02798 -12.71123 -12.25457 -12.08432 -11.86057 -11.64480 -11.46057 -11.36769 -11.07425 -11.05211 -10.99008 -10.83951 -10.78978 -10.71642 -10.42234 -10.23597 -9.81336 -9.64357 -9.45815 -8.74573 -8.34927 -7.99698 -5.97772 -3.99871 0.99997 1.12771 1.96309 2.55729 2.87007 2.97134 3.39042 3.43260 3.47690 3.84723 4.47005 4.52842 4.62046 4.84500 4.90042 5.33449 5.38838 5.39294 5.45132 5.67731 5.71169 5.81978 6.01630 6.15022 6.20041 6.23179 6.30024 6.47478 6.52310 6.59492 6.82163 7.01584 7.19394 7.36910 7.50605 7.62243 7.72689 7.99878 8.30071 9.01394 9.63650 11.10891 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.015329 B = 0.004729 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.135599 B = 5919.571579 C = 6701.523968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 C -0.153 4.153 4 N -0.978 5.978 5 C 0.256 3.744 6 C -0.521 4.521 7 H 0.063 0.937 8 C 0.062 3.938 9 N -0.897 5.897 10 Si 0.893 3.107 11 H -0.275 1.275 12 H -0.288 1.288 13 H -0.277 1.277 14 S 2.707 3.293 15 O -0.941 6.941 16 O -0.982 6.982 17 C -0.754 4.754 18 C 0.153 3.847 19 N -0.519 5.519 20 H 0.426 0.574 21 C -0.064 4.064 22 C 0.556 3.444 23 O -0.498 6.498 24 O -0.524 6.524 25 C 0.010 3.990 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.263 0.737 36 H 0.192 0.808 37 H 0.417 0.583 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.497 -12.032 12.699 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 C -0.212 4.212 4 N -0.818 5.818 5 C 0.134 3.866 6 C -0.560 4.560 7 H 0.081 0.919 8 C -0.140 4.140 9 N -0.536 5.536 10 Si 0.720 3.280 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.203 1.203 14 S 2.795 3.205 15 O -0.931 6.931 16 O -0.972 6.972 17 C -0.844 4.844 18 C 0.008 3.992 19 N -0.113 5.113 20 H 0.265 0.735 21 C -0.173 4.173 22 C 0.400 3.600 23 O -0.386 6.386 24 O -0.337 6.337 25 C -0.015 4.015 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.209 0.791 37 H 0.277 0.723 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.608 -11.941 12.479 18.160 hybrid contribution -0.685 -0.369 -0.507 0.929 sum -6.293 -12.310 11.972 18.289 Atomic orbital electron populations 1.22171 0.96104 1.01342 1.02367 1.20645 0.93628 0.94708 0.86686 1.22133 1.01465 0.95489 1.02146 1.57556 1.70157 1.40221 1.13820 1.19062 0.96950 0.95179 0.75407 1.21479 1.13412 1.19154 1.01967 0.91911 1.24903 0.95569 0.97328 0.96188 1.69913 1.31412 1.42428 1.09832 0.86646 0.81874 0.81914 0.77533 1.20056 1.21386 1.20263 1.01513 0.73560 0.72273 0.73192 1.93600 1.67349 1.86103 1.46069 1.93483 1.73991 1.87043 1.42695 1.31846 1.27737 1.26508 0.98283 1.21844 0.90564 0.87297 0.99474 1.42095 1.36935 1.25304 1.06963 0.73505 1.19344 1.11659 1.03577 0.82699 1.19366 0.76022 0.79005 0.85584 1.91008 1.61001 1.72261 1.14283 1.84544 1.60438 1.42739 1.46006 1.21147 0.91297 0.89807 0.99282 0.91170 0.93343 0.92560 0.90109 0.93596 0.92662 0.89715 0.94330 0.94355 0.92766 0.79079 0.72334 0.81288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.16 37.16 0.34 -1.94 16 2 C 0.15 2.48 3.24 -67.93 -0.22 2.26 16 3 C -0.15 -2.63 8.20 37.16 0.30 -2.33 16 4 N -0.98 -19.28 2.73 -108.57 -0.30 -19.57 16 5 C 0.26 6.14 4.67 -5.19 -0.02 6.11 16 6 C -0.52 -13.96 7.53 -34.44 -0.26 -14.22 16 7 H 0.06 1.67 7.07 -52.49 -0.37 1.30 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.90 -25.87 13.29 55.43 0.74 -25.13 16 10 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 S 2.71 51.99 5.78 -107.50 -0.62 51.36 16 15 O -0.94 -22.14 16.84 -57.17 -0.96 -23.10 16 16 O -0.98 -18.90 16.41 -57.17 -0.94 -19.84 16 17 C -0.75 -11.66 6.18 -39.98 -0.25 -11.91 16 18 C 0.15 1.72 11.61 -17.16 -0.20 1.52 16 19 N -0.52 -5.11 6.07 -9.52 -0.06 -5.17 16 20 H 0.43 2.57 8.96 -40.82 -0.37 2.20 16 21 C -0.06 -0.85 7.10 -81.99 -0.58 -1.43 16 22 C 0.56 6.98 8.30 34.06 0.28 7.26 16 23 O -0.50 -7.94 17.67 -19.35 -0.34 -8.28 16 24 O -0.52 -4.26 13.44 -41.02 -0.55 -4.82 16 25 C 0.01 0.16 10.46 -39.09 -0.41 -0.25 16 26 H 0.07 1.14 6.69 -51.93 -0.35 0.79 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.18 6.91 -51.93 -0.36 0.82 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 32 H 0.08 1.66 6.65 -51.93 -0.35 1.31 16 33 H 0.04 1.00 7.61 -51.93 -0.40 0.61 16 34 H 0.04 0.93 6.45 -51.93 -0.33 0.60 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.19 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.42 1.55 9.11 45.56 0.42 1.97 16 38 H 0.17 2.87 8.06 -52.49 -0.42 2.44 16 LS Contribution 341.25 15.07 5.14 5.14 Total: -1.00 -36.03 341.25 -7.79 -43.82 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -3.76 Total: 2.31 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -1.11 Total: -13.31 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.38 Total: -49.87 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -2.79 Total: -56.04 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 51.99 SS G_CDS: -0.62 Total: 51.36 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.03 -7.79 -43.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036133546.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.494 kcal (2) G-P(sol) polarization free energy of solvation -36.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds