Wall clock time and date at job start Tue Mar 31 2020 11:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46506 * 109.47095 * 2 1 4 4 C 1.46508 * 119.99596 * 270.00132 * 3 2 1 5 5 C 1.50699 * 109.46730 * 269.99990 * 4 3 2 6 6 H 1.08002 * 120.00096 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99896 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00229 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99866 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47297 * 89.99872 * 9 7 5 11 11 H 1.48500 * 109.46830 * 210.00043 * 9 7 5 12 12 H 1.48500 * 109.46784 * 329.99829 * 9 7 5 13 13 C 1.34771 * 120.00320 * 89.99811 * 3 2 1 14 14 O 1.21278 * 120.00235 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99865 * 0.02562 * 13 3 2 16 16 S 1.81403 * 109.47043 * 179.97438 * 15 13 3 17 17 C 1.76198 * 102.99785 * 179.97438 * 16 15 13 18 18 N 1.29642 * 125.41410 * 359.97438 * 17 16 15 19 19 N 1.37766 * 115.60445 * 180.02562 * 18 17 16 20 20 C 1.29580 * 115.62405 * 359.97438 * 19 18 17 21 21 N 1.39000 * 125.39923 * 180.02562 * 20 19 18 22 22 C 1.46494 * 120.00418 * 359.96284 * 21 20 19 23 23 S 1.76035 * 109.19492 * 0.02562 * 20 19 18 24 24 H 1.08996 * 109.46843 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46817 * 300.00147 * 1 2 3 26 26 H 1.09002 * 109.47026 * 59.99880 * 1 2 3 27 27 H 1.08994 * 109.47038 * 239.99722 * 2 1 3 28 28 H 1.09003 * 109.47243 * 119.99369 * 2 1 3 29 29 H 1.08997 * 109.47341 * 29.99683 * 4 3 2 30 30 H 1.08997 * 109.46693 * 150.00038 * 4 3 2 31 31 H 0.96996 * 120.00457 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.47192 * 60.00104 * 15 13 3 33 33 H 1.09000 * 109.47183 * 300.00097 * 15 13 3 34 34 H 0.97004 * 119.99767 * 179.97438 * 21 20 19 35 35 H 1.09003 * 109.46969 * 299.99796 * 22 21 20 36 36 H 1.08996 * 109.47356 * 59.99325 * 22 21 20 37 37 H 1.08998 * 109.47195 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1494 2.3904 -2.8776 8 7 5.3916 2.1841 -3.2570 9 14 3.0135 3.4370 -3.9282 10 1 3.1173 4.8569 -3.5060 11 1 3.4065 3.3147 -5.3550 12 1 1.6136 2.9712 -3.7587 13 6 2.2430 2.0167 1.1671 14 8 2.6477 3.1599 1.1671 15 6 1.9923 1.3061 2.4723 16 16 2.3858 2.4174 3.8510 17 6 2.0365 1.4300 5.2679 18 7 1.6036 0.2082 5.2440 19 7 1.3971 -0.3744 6.4752 20 6 1.6623 0.3726 7.5003 21 7 1.5279 -0.0082 8.8304 22 6 1.0507 -1.3527 9.1628 23 16 2.2196 1.9460 6.9411 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 1.5817 1.6877 -2.0285 30 1 2.0955 3.1410 -1.1385 31 1 5.7179 2.5751 -4.0825 32 1 2.6229 0.4189 2.5299 33 1 0.9445 1.0115 2.5302 34 1 1.7500 0.6165 9.5385 35 1 0.0543 -1.4981 8.7454 36 1 1.7316 -2.0938 8.7443 37 1 1.0105 -1.4664 10.2461 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053593511.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:31 Heat of formation + Delta-G solvation = 41.151025 kcal Electronic energy + Delta-G solvation = -21008.381587 eV Core-core repulsion = 17653.955261 eV Total energy + Delta-G solvation = -3354.426326 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.077 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.55387 -39.26192 -36.43505 -35.54294 -32.80366 -31.19883 -30.57372 -29.91758 -27.41412 -27.20568 -24.72241 -23.04441 -22.43547 -21.00588 -20.00868 -18.59436 -17.30052 -17.11982 -16.93458 -16.67735 -15.72132 -15.63674 -15.17003 -14.94734 -14.16862 -13.99236 -13.85081 -13.54599 -13.41576 -13.31421 -12.80197 -12.71862 -12.39343 -12.18933 -11.85490 -11.64711 -11.49467 -11.13291 -10.99905 -10.77579 -10.64890 -10.48901 -10.19611 -10.17779 -9.77086 -9.58578 -9.29198 -8.92800 -8.60434 -7.87415 -7.69089 -6.10006 -4.09477 0.15318 0.62113 0.88209 1.21571 2.01063 2.14520 2.70901 3.10202 3.28513 3.34273 3.36331 3.68909 4.38198 4.42256 4.67762 4.74065 4.94426 5.05112 5.05741 5.19513 5.23271 5.33465 5.42135 5.52140 5.68467 5.97446 6.11904 6.22633 6.37778 6.63147 6.65469 6.88052 7.21580 7.57282 7.84138 8.06663 8.42432 8.73218 8.93510 9.49371 11.03226 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.028211 B = 0.002769 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.283313 B =10108.135800 C =10568.174233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.582 5.582 4 C 0.217 3.783 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.527 3.473 14 O -0.526 6.526 15 C -0.146 4.146 16 S 0.096 5.904 17 C 0.007 3.993 18 N -0.265 5.265 19 N -0.354 5.354 20 C 0.309 3.691 21 N -0.694 5.694 22 C 0.101 3.899 23 S 0.068 5.932 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.039 0.961 31 H 0.265 0.735 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.417 0.583 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.733 -5.161 23.625 26.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.314 5.314 4 C 0.097 3.903 5 C -0.569 4.569 6 H 0.094 0.906 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.311 3.689 14 O -0.403 6.403 15 C -0.299 4.299 16 S 0.323 5.677 17 C -0.393 4.393 18 N -0.094 5.094 19 N -0.191 5.191 20 C -0.075 4.075 21 N -0.336 5.336 22 C -0.045 4.045 23 S 0.301 5.699 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.254 0.746 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.215 -4.040 23.177 25.648 hybrid contribution -0.795 -0.719 -0.218 1.094 sum -11.011 -4.759 22.959 25.904 Atomic orbital electron populations 1.22229 0.96463 1.01887 1.02270 1.21547 0.93657 0.83425 1.03554 1.47851 1.63452 1.13567 1.06487 1.19728 0.97584 0.93438 0.79578 1.21303 0.95203 1.33152 1.07270 0.90649 1.24849 0.95001 0.95767 0.97321 1.69889 1.15096 1.44831 1.23567 0.86858 0.81430 0.81647 0.79805 1.19843 1.21045 1.19055 1.19268 0.79014 0.86645 0.83957 1.90724 1.45546 1.17575 1.86478 1.23989 1.07883 1.03091 0.94927 1.86461 1.80263 1.12407 0.88555 1.30852 1.05993 0.99774 1.02698 1.75461 1.15088 1.04861 1.14031 1.75073 1.26415 1.25581 0.92061 1.25968 0.97059 0.92855 0.91574 1.43626 1.73056 1.16862 1.00079 1.21666 1.00113 0.81842 1.00834 1.85556 1.71125 1.14742 0.98508 0.91709 0.92956 0.92070 0.89277 0.91118 0.94882 0.94352 0.92506 0.86000 0.86209 0.74589 0.91965 0.91918 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.10 1.57 5.93 -4.04 -0.02 1.54 16 3 N -0.58 -11.67 2.46 -175.05 -0.43 -12.10 16 4 C 0.22 5.19 4.23 -5.19 -0.02 5.17 16 5 C -0.53 -15.04 9.94 -34.44 -0.34 -15.38 16 6 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 9 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 13 C 0.53 10.50 7.69 -10.99 -0.08 10.41 16 14 O -0.53 -12.51 15.44 5.56 0.09 -12.43 16 15 C -0.15 -2.23 4.58 36.01 0.16 -2.07 16 16 S 0.10 1.44 21.30 -107.50 -2.29 -0.85 16 17 C 0.01 0.09 7.82 51.84 0.41 0.50 16 18 N -0.27 -4.01 11.62 31.12 0.36 -3.65 16 19 N -0.35 -4.98 11.68 30.85 0.36 -4.62 16 20 C 0.31 3.36 8.42 -87.39 -0.74 2.62 16 21 N -0.69 -4.72 5.88 -67.63 -0.40 -5.12 16 22 C 0.10 0.53 11.01 59.84 0.66 1.19 16 23 S 0.07 0.72 23.39 -107.50 -2.51 -1.79 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.63 7.22 -51.93 -0.38 0.26 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 28 H 0.07 0.94 6.44 -51.93 -0.33 0.61 16 29 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 30 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 31 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.12 1.75 7.40 -51.93 -0.38 1.37 16 33 H 0.12 1.60 7.19 -51.92 -0.37 1.23 16 34 H 0.42 1.60 8.96 -40.82 -0.37 1.23 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 345.62 15.07 5.21 5.21 Total: -1.00 -35.48 345.62 -7.89 -43.37 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -4.68 Total: -2.24 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 0.30 Total: 4.23 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.67 Total: -52.19 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.43 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -4.80 Total: -2.65 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.48 -7.89 -43.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053593511.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.520 kcal (2) G-P(sol) polarization free energy of solvation -35.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds