Wall clock time and date at job start Tue Mar 31 2020 11:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46506 * 109.47095 * 2 1 4 4 C 1.46508 * 119.99596 * 270.00132 * 3 2 1 5 5 C 1.50699 * 109.46730 * 269.99990 * 4 3 2 6 6 H 1.08002 * 120.00096 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99896 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00229 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99866 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47297 * 89.99872 * 9 7 5 11 11 H 1.48500 * 109.46830 * 210.00043 * 9 7 5 12 12 H 1.48500 * 109.46784 * 329.99829 * 9 7 5 13 13 C 1.34771 * 120.00320 * 89.99811 * 3 2 1 14 14 O 1.21278 * 120.00235 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99865 * 0.02562 * 13 3 2 16 16 S 1.81403 * 109.47043 * 179.97438 * 15 13 3 17 17 C 1.76198 * 102.99785 * 179.97438 * 16 15 13 18 18 N 1.29642 * 125.41410 * 359.97438 * 17 16 15 19 19 N 1.37766 * 115.60445 * 180.02562 * 18 17 16 20 20 C 1.29580 * 115.62405 * 359.97438 * 19 18 17 21 21 N 1.39000 * 125.39923 * 180.02562 * 20 19 18 22 22 C 1.46494 * 120.00418 * 359.96284 * 21 20 19 23 23 S 1.76035 * 109.19492 * 0.02562 * 20 19 18 24 24 H 1.08996 * 109.46843 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46817 * 300.00147 * 1 2 3 26 26 H 1.09002 * 109.47026 * 59.99880 * 1 2 3 27 27 H 1.08994 * 109.47038 * 239.99722 * 2 1 3 28 28 H 1.09003 * 109.47243 * 119.99369 * 2 1 3 29 29 H 1.08997 * 109.47341 * 29.99683 * 4 3 2 30 30 H 1.08997 * 109.46693 * 150.00038 * 4 3 2 31 31 H 0.96996 * 120.00457 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.47192 * 60.00104 * 15 13 3 33 33 H 1.09000 * 109.47183 * 300.00097 * 15 13 3 34 34 H 0.97004 * 119.99767 * 179.97438 * 21 20 19 35 35 H 1.09003 * 109.46969 * 299.99796 * 22 21 20 36 36 H 1.08996 * 109.47356 * 59.99325 * 22 21 20 37 37 H 1.08998 * 109.47195 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1494 2.3904 -2.8776 8 7 5.3916 2.1841 -3.2570 9 14 3.0135 3.4370 -3.9282 10 1 3.1173 4.8569 -3.5060 11 1 3.4065 3.3147 -5.3550 12 1 1.6136 2.9712 -3.7587 13 6 2.2430 2.0167 1.1671 14 8 2.6477 3.1599 1.1671 15 6 1.9923 1.3061 2.4723 16 16 2.3858 2.4174 3.8510 17 6 2.0365 1.4300 5.2679 18 7 1.6036 0.2082 5.2440 19 7 1.3971 -0.3744 6.4752 20 6 1.6623 0.3726 7.5003 21 7 1.5279 -0.0082 8.8304 22 6 1.0507 -1.3527 9.1628 23 16 2.2196 1.9460 6.9411 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 1.5817 1.6877 -2.0285 30 1 2.0955 3.1410 -1.1385 31 1 5.7179 2.5751 -4.0825 32 1 2.6229 0.4189 2.5299 33 1 0.9445 1.0115 2.5302 34 1 1.7500 0.6165 9.5385 35 1 0.0543 -1.4981 8.7454 36 1 1.7316 -2.0938 8.7443 37 1 1.0105 -1.4664 10.2461 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053593511.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:30 Heat of formation + Delta-G solvation = 15.372310 kcal Electronic energy + Delta-G solvation = -21009.499435 eV Core-core repulsion = 17653.955261 eV Total energy + Delta-G solvation = -3355.544175 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.077 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85375 -40.48361 -37.16982 -37.10220 -34.89427 -32.36047 -31.96959 -31.19083 -29.04980 -28.00185 -25.60332 -24.53104 -24.16254 -21.90315 -20.93534 -20.04460 -19.11406 -18.31439 -18.14562 -18.00239 -17.08611 -16.78566 -16.44375 -16.07766 -15.77014 -15.06579 -14.84810 -14.74529 -14.72810 -14.49974 -14.31579 -13.99736 -13.69975 -13.37772 -13.15925 -13.09886 -12.59683 -12.50171 -12.43199 -12.14915 -12.03915 -11.95038 -11.73717 -11.66101 -11.15718 -10.94440 -10.81893 -10.66727 -9.70252 -9.52558 -8.77395 -8.32835 -6.38385 -0.78697 -0.31434 -0.04060 0.17987 0.85682 1.19727 1.34480 1.38589 1.46588 1.55463 2.03823 2.19125 2.32097 3.01342 3.35755 3.59860 3.86882 4.01110 4.03029 4.23590 4.37715 4.38438 4.59276 4.60404 4.77410 4.87467 4.93463 4.96101 5.00010 5.36174 5.45571 5.53550 5.55879 6.15875 6.21678 6.51388 6.63373 6.95366 7.11811 7.28015 8.84025 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.028211 B = 0.002769 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.283313 B =10108.135800 C =10568.174233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.095 3.905 3 N -0.589 5.589 4 C 0.226 3.774 5 C -0.537 4.537 6 H 0.029 0.971 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.275 1.275 11 H -0.276 1.276 12 H -0.236 1.236 13 C 0.521 3.479 14 O -0.573 6.573 15 C -0.130 4.130 16 S 0.073 5.927 17 C -0.010 4.010 18 N -0.283 5.283 19 N -0.390 5.390 20 C 0.310 3.690 21 N -0.675 5.675 22 C 0.097 3.903 23 S 0.116 5.884 24 H 0.093 0.907 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.024 0.976 31 H 0.268 0.732 32 H 0.131 0.869 33 H 0.144 0.856 34 H 0.433 0.567 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.031 -5.666 25.491 29.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.027 4.027 3 N -0.320 5.320 4 C 0.104 3.896 5 C -0.575 4.575 6 H 0.048 0.952 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.201 1.201 12 H -0.159 1.159 13 C 0.307 3.693 14 O -0.454 6.454 15 C -0.283 4.283 16 S 0.299 5.701 17 C -0.411 4.411 18 N -0.112 5.112 19 N -0.230 5.230 20 C -0.074 4.074 21 N -0.318 5.318 22 C -0.049 4.049 23 S 0.349 5.651 24 H 0.112 0.888 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.149 0.851 33 H 0.162 0.838 34 H 0.273 0.727 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.543 -4.593 25.117 28.448 hybrid contribution -0.009 -0.658 -0.559 0.864 sum -12.552 -5.251 24.558 28.075 Atomic orbital electron populations 1.22161 0.93753 1.03777 1.02248 1.21853 0.95814 0.80863 1.04216 1.47937 1.63387 1.15216 1.05418 1.19396 0.95054 0.93250 0.81931 1.21533 0.96966 1.32232 1.06796 0.95228 1.25845 0.96705 0.97184 0.98940 1.70046 1.17428 1.46496 1.24497 0.85727 0.80522 0.79055 0.77735 1.20102 1.20143 1.15939 1.19949 0.77796 0.86279 0.85291 1.90691 1.47514 1.19770 1.87397 1.23778 1.09473 1.02516 0.92484 1.86503 1.81227 1.12991 0.89348 1.30694 1.06868 0.99826 1.03692 1.75395 1.15057 1.05348 1.15415 1.75037 1.29108 1.26483 0.92337 1.26260 0.95680 0.92846 0.92593 1.43900 1.71192 1.17823 0.98852 1.21863 0.99185 0.80538 1.03275 1.85348 1.70369 1.13687 0.95711 0.88819 0.92253 0.92813 0.90197 0.88997 0.92799 0.95800 0.92264 0.85077 0.83845 0.72661 0.92757 0.92919 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 10.24 71.98 0.74 -2.92 16 2 C 0.09 2.80 5.93 86.38 0.51 3.31 16 3 N -0.59 -23.60 2.46 -826.13 -2.03 -25.63 16 4 C 0.23 10.83 4.23 85.63 0.36 11.19 16 5 C -0.54 -31.39 9.94 25.60 0.25 -31.14 16 6 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 7 C 0.01 0.67 5.47 84.66 0.46 1.13 16 8 N -0.94 -59.78 13.96 21.45 0.30 -59.48 16 9 Si 0.95 44.15 27.47 68.60 1.88 46.04 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 13 C 0.52 20.94 7.69 87.66 0.67 21.62 16 14 O -0.57 -28.07 15.44 -3.02 -0.05 -28.12 16 15 C -0.13 -3.91 4.58 71.24 0.33 -3.59 16 16 S 0.07 2.17 21.30 -56.49 -1.20 0.97 16 17 C -0.01 -0.28 7.82 130.57 1.02 0.74 16 18 N -0.28 -8.29 11.62 -55.47 -0.64 -8.94 16 19 N -0.39 -10.50 11.68 -56.30 -0.66 -11.16 16 20 C 0.31 6.13 8.42 179.22 1.51 7.64 16 21 N -0.67 -7.31 5.88 -367.87 -2.16 -9.47 16 22 C 0.10 0.76 11.01 127.77 1.41 2.16 16 23 S 0.12 2.26 23.39 -56.49 -1.32 0.94 16 24 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.06 1.27 7.22 -2.39 -0.02 1.26 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16 28 H 0.09 2.31 6.44 -2.39 -0.02 2.29 16 29 H 0.05 2.36 7.13 -2.39 -0.02 2.34 16 30 H 0.02 1.22 6.85 -2.39 -0.02 1.20 16 31 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 32 H 0.13 3.69 7.40 -2.39 -0.02 3.67 16 33 H 0.14 3.60 7.19 -2.39 -0.02 3.58 16 34 H 0.43 1.83 8.96 -92.70 -0.83 1.00 16 35 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 Total: -1.00 -80.67 345.62 1.61 -79.07 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 0.22 Total: 5.65 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 7.27 Total: 10.14 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -5.20 Total: -114.68 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.05 Total: -28.12 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.04 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -2.52 Total: 1.91 kcal Total: -80.67 1.61 -79.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053593511.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.439 kcal (2) G-P(sol) polarization free energy of solvation -80.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds