Wall clock time and date at job start Tue Mar 31 2020 11:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47124 * 2 1 4 4 H 1.08999 * 109.47292 * 179.97438 * 3 2 1 5 5 C 1.50693 * 109.46957 * 299.93497 * 3 2 1 6 6 H 1.08010 * 119.99716 * 115.91887 * 5 3 2 7 7 C 1.37877 * 120.00587 * 295.92094 * 5 3 2 8 8 N 1.31521 * 119.99419 * 353.46126 * 7 5 3 9 9 Si 1.86798 * 120.00408 * 173.45669 * 7 5 3 10 10 H 1.48501 * 109.47040 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.47185 * 299.99970 * 9 7 5 12 12 H 1.48499 * 109.46924 * 60.00178 * 9 7 5 13 13 N 1.46500 * 109.47158 * 59.93557 * 3 2 1 14 14 S 1.65600 * 119.99881 * 95.72807 * 13 3 2 15 15 O 1.42097 * 106.40256 * 177.92662 * 14 13 3 16 16 O 1.42104 * 106.40172 * 310.84312 * 14 13 3 17 17 C 1.76191 * 107.22026 * 64.38332 * 14 13 3 18 18 C 1.39804 * 126.07549 * 90.02241 * 17 14 13 19 19 C 1.38000 * 106.96381 * 179.97438 * 18 17 14 20 20 C 1.46495 * 126.26036 * 179.97438 * 19 18 17 21 21 O 1.21622 * 119.99861 * 0.02788 * 20 19 18 22 22 O 1.34890 * 119.99999 * 180.02562 * 20 19 18 23 23 N 1.37691 * 107.47829 * 0.02562 * 19 18 17 24 24 C 1.46499 * 125.63987 * 179.97438 * 23 19 18 25 25 C 1.34966 * 108.72550 * 359.75767 * 23 19 18 26 26 H 1.09001 * 109.46722 * 65.01115 * 1 2 3 27 27 H 1.09004 * 109.47181 * 185.00104 * 1 2 3 28 28 H 1.08997 * 109.47552 * 305.01041 * 1 2 3 29 29 H 1.08994 * 109.47751 * 239.99738 * 2 1 3 30 30 H 1.09005 * 109.46749 * 119.99607 * 2 1 3 31 31 H 0.96994 * 120.00168 * 355.00176 * 8 7 5 32 32 H 0.96994 * 119.99890 * 275.73136 * 13 3 2 33 33 H 1.08002 * 126.51624 * 0.02562 * 18 17 14 34 34 H 0.96700 * 117.00107 * 180.02562 * 22 20 19 35 35 H 1.09002 * 109.47088 * 89.99675 * 24 23 19 36 36 H 1.08999 * 109.47457 * 210.00055 * 24 23 19 37 37 H 1.09007 * 109.46948 * 330.00599 * 24 23 19 38 38 H 1.08008 * 125.50301 * 180.27944 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4426 0.0005 5 6 1.5390 2.1524 -1.2312 6 1 0.8646 2.9906 -1.1345 7 6 1.9412 1.7320 -2.4812 8 7 2.8595 0.7975 -2.5966 9 14 1.1820 2.4895 -4.0106 10 1 1.7807 1.8690 -5.2197 11 1 -0.2835 2.2503 -4.0062 12 1 1.4450 3.9510 -4.0219 13 7 1.5504 2.1336 1.1954 14 16 2.5056 2.2318 2.5446 15 8 1.7768 2.9932 3.4976 16 8 2.9779 0.9158 2.7984 17 6 3.9182 3.1931 2.1148 18 6 4.0354 4.5814 2.2304 19 6 5.2981 4.9172 1.7863 20 6 5.8646 6.2668 1.7251 21 8 5.2034 7.2209 2.0883 22 8 7.1194 6.4514 1.2660 23 7 5.9277 3.7519 1.4102 24 6 7.2886 3.6505 0.8772 25 6 5.0856 2.7178 1.6181 26 1 -0.3633 0.4341 -0.9315 27 1 -0.3634 -1.0238 0.0896 28 1 -0.3634 0.5896 0.8417 29 1 1.8934 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.3056 0.4557 -1.8061 32 1 0.6667 2.5336 1.1966 33 1 3.2814 5.2616 2.5982 34 1 7.4499 7.3599 1.2447 35 1 7.9915 3.5149 1.6992 36 1 7.3514 2.7980 0.2009 37 1 7.5353 4.5635 0.3350 38 1 5.3063 1.6794 1.4192 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054176794.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:16 Heat of formation + Delta-G solvation = -125.494475 kcal Electronic energy + Delta-G solvation = -25214.931903 eV Core-core repulsion = 21378.233664 eV Total energy + Delta-G solvation = -3836.698239 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.097 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.63965 -39.74895 -36.76157 -36.32806 -36.17542 -35.27399 -33.17546 -32.25672 -30.41073 -29.93671 -26.92805 -25.89304 -24.26399 -23.73422 -21.56485 -20.21789 -20.09818 -19.09991 -18.07935 -17.71201 -17.53182 -16.70906 -16.15710 -15.71695 -15.34380 -15.03634 -14.97680 -14.02311 -13.96127 -13.71258 -13.50068 -13.32762 -13.04990 -12.79373 -12.68877 -12.58727 -12.39431 -11.78937 -11.58696 -11.48710 -11.38443 -11.12557 -11.05761 -10.88663 -10.79894 -10.49551 -10.27663 -10.17820 -9.91953 -9.28195 -8.99934 -8.60808 -8.45214 -8.25289 -6.47256 -4.20553 1.08160 1.08656 2.04949 2.49072 2.85768 2.93306 3.37172 3.38593 3.56342 3.81898 4.35900 4.43673 4.49385 4.71038 4.85418 4.96212 5.03056 5.23311 5.30578 5.41552 5.64548 5.83196 6.06042 6.18304 6.22631 6.35820 6.39280 6.47231 6.61815 6.84486 6.89855 7.01615 7.22878 7.31190 7.41280 7.67475 7.72897 8.10350 8.35045 8.70200 9.46937 10.88302 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.011943 B = 0.005547 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.840305 B = 5046.331143 C = 6277.360461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.140 4.140 3 C 0.271 3.729 4 H 0.029 0.971 5 C -0.595 4.595 6 H 0.058 0.942 7 C 0.027 3.973 8 N -0.907 5.907 9 Si 1.063 2.937 10 H -0.283 1.283 11 H -0.286 1.286 12 H -0.289 1.289 13 N -1.094 6.094 14 S 2.716 3.284 15 O -0.981 6.981 16 O -0.970 6.970 17 C -0.750 4.750 18 C 0.004 3.996 19 C -0.065 4.065 20 C 0.561 3.439 21 O -0.506 6.506 22 O -0.520 6.520 23 N -0.409 5.409 24 C 0.060 3.940 25 C 0.162 3.838 26 H 0.062 0.938 27 H 0.027 0.973 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.271 0.729 32 H 0.411 0.589 33 H 0.165 0.835 34 H 0.414 0.586 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.869 5.413 5.843 11.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.180 4.180 3 C 0.165 3.835 4 H 0.047 0.953 5 C -0.635 4.635 6 H 0.076 0.924 7 C -0.178 4.178 8 N -0.543 5.543 9 Si 0.891 3.109 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.216 1.216 13 N -0.855 5.855 14 S 2.803 3.197 15 O -0.971 6.971 16 O -0.960 6.960 17 C -0.841 4.841 18 C -0.021 4.021 19 C -0.173 4.173 20 C 0.406 3.594 21 O -0.394 6.394 22 O -0.333 6.333 23 N -0.082 5.082 24 C -0.081 4.081 25 C 0.018 3.982 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.245 0.755 33 H 0.183 0.817 34 H 0.273 0.727 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 8.974 4.829 4.954 11.331 hybrid contribution 0.429 1.318 1.019 1.720 sum 9.403 6.147 5.973 12.723 Atomic orbital electron populations 1.21504 0.96765 0.98557 1.01675 1.22032 0.96317 0.98990 1.00631 1.18553 0.93466 0.88812 0.82624 0.95306 1.22041 1.32107 1.17979 0.91372 0.92378 1.25675 0.95676 0.95430 1.00992 1.70816 1.23166 1.26645 1.33715 0.83629 0.75990 0.75566 0.75744 1.20818 1.21247 1.21556 1.55366 1.28364 1.70606 1.31147 1.01011 0.72752 0.73279 0.72616 1.93518 1.71103 1.72902 1.59540 1.93546 1.82150 1.36150 1.84136 1.31310 1.19183 1.07706 1.25887 1.20946 0.93626 0.93014 0.94557 1.19356 0.95787 0.83803 1.18345 1.19333 0.78935 0.87585 0.73583 1.90967 1.60804 1.41466 1.46152 1.84606 1.31441 1.38300 1.78925 1.44188 1.13149 1.05781 1.45061 1.22436 0.79210 1.05923 1.00505 1.21843 0.88098 0.93637 0.94665 0.91926 0.95340 0.94233 0.90892 0.94051 0.91806 0.75459 0.81718 0.72673 0.90002 0.88747 0.87849 0.79232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.48 37.16 0.35 -2.22 16 2 C -0.14 -3.07 5.58 -26.73 -0.15 -3.22 16 3 C 0.27 6.05 2.10 -69.08 -0.14 5.90 16 4 H 0.03 0.67 6.96 -51.93 -0.36 0.30 16 5 C -0.60 -14.77 7.54 -34.44 -0.26 -15.03 16 6 H 0.06 1.44 7.82 -52.48 -0.41 1.03 16 7 C 0.03 0.71 5.24 -17.82 -0.09 0.61 16 8 N -0.91 -24.51 12.83 55.43 0.71 -23.80 16 9 Si 1.06 23.43 29.91 -169.99 -5.08 18.34 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 13 N -1.09 -21.33 4.76 -5.88 -0.03 -21.36 16 14 S 2.72 50.19 5.79 -107.50 -0.62 49.56 16 15 O -0.98 -19.57 17.87 -57.17 -1.02 -20.59 16 16 O -0.97 -19.51 17.20 -57.17 -0.98 -20.50 16 17 C -0.75 -12.77 5.97 -39.98 -0.24 -13.01 16 18 C 0.00 0.07 10.46 -39.08 -0.41 -0.34 16 19 C -0.07 -0.99 6.89 -82.00 -0.56 -1.56 16 20 C 0.56 7.62 8.29 34.06 0.28 7.90 16 21 O -0.51 -8.17 17.67 -19.36 -0.34 -8.51 16 22 O -0.52 -4.71 10.86 -41.01 -0.45 -5.16 16 23 N -0.41 -5.53 3.15 -120.40 -0.38 -5.90 16 24 C 0.06 0.54 10.56 59.85 0.63 1.17 16 25 C 0.16 2.44 10.83 -17.16 -0.19 2.25 16 26 H 0.06 1.33 7.40 -51.93 -0.38 0.95 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.73 7.19 -51.93 -0.37 0.36 16 29 H 0.07 1.73 6.21 -51.93 -0.32 1.41 16 30 H 0.04 0.88 7.72 -51.93 -0.40 0.48 16 31 H 0.27 7.18 6.09 -40.82 -0.25 6.93 16 32 H 0.41 7.48 8.46 -34.47 -0.29 7.18 16 33 H 0.17 2.60 8.06 -52.49 -0.42 2.18 16 34 H 0.41 1.81 9.11 45.56 0.42 2.23 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.88 6.15 -51.92 -0.32 0.56 16 38 H 0.19 2.43 8.06 -52.48 -0.42 2.00 16 LS Contribution 337.92 15.07 5.09 5.09 Total: -1.00 -34.11 337.92 -7.49 -41.60 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -3.61 Total: 8.75 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -0.78 Total: -17.53 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.30 Total: -51.07 kcal Atomic # 8 Polarization: -51.96 SS G_CDS: -2.79 Total: -54.75 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.08 Total: 18.34 kcal Atomic # 16 Polarization: 50.19 SS G_CDS: -0.62 Total: 49.56 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.11 -7.49 -41.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054176794.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.894 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds