Wall clock time and date at job start Tue Mar 31 2020 10:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47171 * 2 1 4 4 C 1.53001 * 109.47320 * 120.00389 * 2 1 3 5 5 N 1.46495 * 109.47156 * 174.99896 * 4 2 1 6 6 C 1.39000 * 119.99607 * 179.97438 * 5 4 2 7 7 N 1.29579 * 125.40801 * 359.95790 * 6 5 4 8 8 N 1.37764 * 115.62577 * 180.02562 * 7 6 5 9 9 C 1.29639 * 115.60783 * 359.97438 * 8 7 6 10 10 S 1.76197 * 125.41491 * 180.02562 * 9 8 7 11 11 C 1.81403 * 102.99677 * 359.96336 * 10 9 8 12 12 C 1.50699 * 109.46845 * 180.02562 * 11 10 9 13 13 O 1.21297 * 120.00239 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00098 * 179.97438 * 12 11 10 15 15 C 1.37091 * 120.00308 * 179.97438 * 14 12 11 16 16 H 1.08001 * 119.99837 * 359.97438 * 15 14 12 17 17 C 1.38954 * 120.00089 * 180.02562 * 15 14 12 18 18 N 1.31405 * 119.99884 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99839 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47538 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47093 * 120.00043 * 19 17 15 22 22 H 1.48496 * 109.47005 * 239.99525 * 19 17 15 23 23 S 1.76039 * 125.40215 * 180.02562 * 6 5 4 24 24 H 1.08999 * 109.47544 * 299.99911 * 1 2 3 25 25 H 1.09002 * 109.47409 * 59.99492 * 1 2 3 26 26 H 1.08997 * 109.47306 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47014 * 240.00631 * 2 1 3 28 28 H 1.08998 * 109.47088 * 299.99844 * 3 2 1 29 29 H 1.09001 * 109.46636 * 60.00400 * 3 2 1 30 30 H 1.08996 * 109.46849 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47159 * 54.99575 * 4 2 1 32 32 H 1.09003 * 109.46715 * 295.00288 * 4 2 1 33 33 H 0.96998 * 120.00499 * 0.02562 * 5 4 2 34 34 H 1.09000 * 109.47112 * 299.99450 * 11 10 9 35 35 H 1.09002 * 109.47355 * 59.99875 * 11 10 9 36 36 H 0.97001 * 119.99553 * 0.02562 * 14 12 11 37 37 H 0.97002 * 119.99844 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.1941 -1.4473 2.2224 7 7 3.6581 -1.9667 3.2817 8 7 4.5380 -2.5318 4.1786 9 6 5.7902 -2.4723 3.8483 10 16 7.1286 -3.1108 4.8000 11 6 6.2983 -3.8125 6.2522 12 6 7.3262 -4.4077 7.1797 13 8 8.5031 -4.3634 6.8893 14 7 6.9378 -4.9894 8.3318 15 6 7.8728 -5.5314 9.1753 16 1 8.9206 -5.4926 8.9163 17 6 7.4724 -6.1315 10.3628 18 7 6.1975 -6.1791 10.6776 19 14 8.7465 -6.8693 11.5124 20 1 10.1014 -6.6865 10.9326 21 1 8.6760 -6.1899 12.8310 22 1 8.4749 -8.3187 11.6874 23 16 5.9410 -1.6511 2.2985 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1299 1.4425 0.0005 31 1 1.6054 -1.7198 1.2951 32 1 1.7516 -0.1584 2.1369 33 1 3.9824 -0.4622 0.4319 34 1 5.7513 -3.0266 6.7731 35 1 5.6030 -4.5891 5.9334 36 1 5.9967 -5.0252 8.5638 37 1 5.9179 -6.5984 11.5064 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076610009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:58 Heat of formation + Delta-G solvation = 15.559074 kcal Electronic energy + Delta-G solvation = -20146.967839 eV Core-core repulsion = 16791.431763 eV Total energy + Delta-G solvation = -3355.536076 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.077 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.47470 -38.22449 -37.78684 -34.56056 -34.09514 -31.45699 -30.66292 -29.23109 -27.71535 -26.83453 -24.71235 -24.52381 -21.34616 -20.62938 -19.90750 -19.19500 -18.05114 -17.18566 -16.75945 -16.03206 -15.93118 -15.39221 -15.02723 -14.56543 -14.54893 -14.15733 -14.02664 -13.67079 -13.50330 -13.13661 -13.00557 -12.63285 -12.55839 -12.17388 -11.69668 -11.66415 -11.59255 -11.30955 -11.16787 -11.10761 -10.90595 -10.43355 -10.39034 -10.26739 -9.99258 -9.63994 -9.59357 -8.75016 -8.68115 -8.10581 -7.46491 -6.51104 -3.93006 0.34484 0.80958 1.05706 1.46878 2.33040 2.36098 2.81674 3.11227 3.23893 3.31152 3.70932 4.10653 4.18338 4.33952 4.41917 4.63419 4.80251 4.98240 5.10956 5.12575 5.13710 5.18251 5.28325 5.32591 5.43092 5.58471 5.60239 5.72641 5.75329 5.78028 6.09931 6.41190 6.80266 7.47204 7.91354 8.02955 8.43857 9.04424 9.37780 9.85970 10.65832 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.033449 B = 0.002154 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.900501 B =12993.524159 C =13716.349176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.150 4.150 4 C 0.137 3.863 5 N -0.690 5.690 6 C 0.310 3.690 7 N -0.355 5.355 8 N -0.266 5.266 9 C 0.009 3.991 10 S 0.095 5.905 11 C -0.131 4.131 12 C 0.451 3.549 13 O -0.584 6.584 14 N -0.545 5.545 15 C -0.303 4.303 16 H 0.108 0.892 17 C 0.025 3.975 18 N -0.894 5.894 19 Si 0.933 3.067 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.280 1.280 23 S 0.057 5.943 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.414 0.586 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.396 0.604 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.568 12.918 -21.689 26.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.208 4.208 4 C 0.011 3.989 5 N -0.333 5.333 6 C -0.074 4.074 7 N -0.192 5.192 8 N -0.095 5.095 9 C -0.391 4.391 10 S 0.322 5.678 11 C -0.284 4.284 12 C 0.235 3.765 13 O -0.470 6.470 14 N -0.180 5.180 15 C -0.433 4.433 16 H 0.125 0.875 17 C -0.178 4.178 18 N -0.534 5.534 19 Si 0.760 3.240 20 H -0.190 1.190 21 H -0.206 1.206 22 H -0.206 1.206 23 S 0.289 5.711 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.252 0.748 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.230 0.770 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.322 12.744 -21.577 26.405 hybrid contribution -1.332 -0.264 0.722 1.538 sum -9.654 12.480 -20.855 26.152 Atomic orbital electron populations 1.21755 0.93619 1.02448 1.02459 1.21367 0.97006 0.96690 0.97647 1.21888 1.00983 0.95505 1.02393 1.21563 0.77774 1.01088 0.98446 1.43870 1.06507 1.62672 1.20289 1.25920 0.91852 0.96436 0.93163 1.75069 1.24407 1.18493 1.01189 1.75484 0.96998 1.16658 1.20408 1.31005 1.02037 1.05389 1.00624 1.86327 0.98266 1.66697 1.16492 1.23784 1.02843 1.04811 0.96998 1.18845 0.88250 0.85549 0.83857 1.90565 1.17595 1.63480 1.75335 1.41751 1.10509 1.49178 1.16606 1.19813 0.91240 1.33093 0.99139 0.87454 1.25341 0.97022 0.97408 0.97985 1.69625 1.14597 1.43921 1.25281 0.85740 0.80404 0.78425 0.79431 1.19038 1.20602 1.20609 1.85467 1.04211 1.61261 1.20115 0.92113 0.92003 0.92147 0.90406 0.92218 0.92169 0.92689 0.91206 0.91161 0.74845 0.87183 0.87176 0.76996 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 9.19 37.16 0.34 -0.30 16 2 C -0.11 -0.52 2.96 -90.62 -0.27 -0.79 16 3 C -0.15 -0.67 9.07 37.16 0.34 -0.34 16 4 C 0.14 1.02 5.37 -4.04 -0.02 1.00 16 5 N -0.69 -5.78 5.46 -60.83 -0.33 -6.11 16 6 C 0.31 3.84 8.42 -87.39 -0.74 3.10 16 7 N -0.35 -5.62 11.68 30.85 0.36 -5.26 16 8 N -0.27 -4.62 11.62 31.11 0.36 -4.26 16 9 C 0.01 0.14 7.82 51.84 0.41 0.55 16 10 S 0.10 1.63 21.30 -107.50 -2.29 -0.66 16 11 C -0.13 -2.44 6.03 36.01 0.22 -2.22 16 12 C 0.45 10.62 7.80 -10.98 -0.09 10.53 16 13 O -0.58 -15.50 15.44 5.54 0.09 -15.42 16 14 N -0.55 -13.73 5.29 -10.96 -0.06 -13.79 16 15 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 16 H 0.11 3.07 7.16 -52.49 -0.38 2.69 16 17 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 18 N -0.89 -24.03 13.05 55.50 0.72 -23.31 16 19 Si 0.93 20.68 29.55 -169.99 -5.02 15.66 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 23 S 0.06 0.69 23.39 -107.50 -2.51 -1.83 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.24 7.18 -51.93 -0.37 -0.14 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.41 2.38 7.78 -40.82 -0.32 2.07 16 34 H 0.11 1.91 8.14 -51.92 -0.42 1.49 16 35 H 0.11 1.92 8.14 -51.92 -0.42 1.49 16 36 H 0.40 9.57 7.90 -40.82 -0.32 9.24 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 349.68 15.07 5.27 5.27 Total: -1.00 -31.86 349.68 -8.22 -40.08 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.75 Total: 5.98 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -0.05 Total: 3.64 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 1.06 Total: -52.72 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.09 Total: -15.42 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -4.80 Total: -2.49 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.86 -8.22 -40.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076610009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.636 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds