Wall clock time and date at job start Tue Mar 31 2020 10:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47171 * 2 1 4 4 C 1.53001 * 109.47320 * 120.00389 * 2 1 3 5 5 N 1.46495 * 109.47156 * 174.99896 * 4 2 1 6 6 C 1.39000 * 119.99607 * 179.97438 * 5 4 2 7 7 N 1.29579 * 125.40801 * 359.95790 * 6 5 4 8 8 N 1.37764 * 115.62577 * 180.02562 * 7 6 5 9 9 C 1.29639 * 115.60783 * 359.97438 * 8 7 6 10 10 S 1.76197 * 125.41491 * 180.02562 * 9 8 7 11 11 C 1.81403 * 102.99677 * 359.96336 * 10 9 8 12 12 C 1.50699 * 109.46845 * 180.02562 * 11 10 9 13 13 O 1.21297 * 120.00239 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00098 * 179.97438 * 12 11 10 15 15 C 1.37091 * 120.00308 * 179.97438 * 14 12 11 16 16 H 1.08001 * 119.99837 * 359.97438 * 15 14 12 17 17 C 1.38954 * 120.00089 * 180.02562 * 15 14 12 18 18 N 1.31405 * 119.99884 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99839 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47538 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47093 * 120.00043 * 19 17 15 22 22 H 1.48496 * 109.47005 * 239.99525 * 19 17 15 23 23 S 1.76039 * 125.40215 * 180.02562 * 6 5 4 24 24 H 1.08999 * 109.47544 * 299.99911 * 1 2 3 25 25 H 1.09002 * 109.47409 * 59.99492 * 1 2 3 26 26 H 1.08997 * 109.47306 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47014 * 240.00631 * 2 1 3 28 28 H 1.08998 * 109.47088 * 299.99844 * 3 2 1 29 29 H 1.09001 * 109.46636 * 60.00400 * 3 2 1 30 30 H 1.08996 * 109.46849 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47159 * 54.99575 * 4 2 1 32 32 H 1.09003 * 109.46715 * 295.00288 * 4 2 1 33 33 H 0.96998 * 120.00499 * 0.02562 * 5 4 2 34 34 H 1.09000 * 109.47112 * 299.99450 * 11 10 9 35 35 H 1.09002 * 109.47355 * 59.99875 * 11 10 9 36 36 H 0.97001 * 119.99553 * 0.02562 * 14 12 11 37 37 H 0.97002 * 119.99844 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.1941 -1.4473 2.2224 7 7 3.6581 -1.9667 3.2817 8 7 4.5380 -2.5318 4.1786 9 6 5.7902 -2.4723 3.8483 10 16 7.1286 -3.1108 4.8000 11 6 6.2983 -3.8125 6.2522 12 6 7.3262 -4.4077 7.1797 13 8 8.5031 -4.3634 6.8893 14 7 6.9378 -4.9894 8.3318 15 6 7.8728 -5.5314 9.1753 16 1 8.9206 -5.4926 8.9163 17 6 7.4724 -6.1315 10.3628 18 7 6.1975 -6.1791 10.6776 19 14 8.7465 -6.8693 11.5124 20 1 10.1014 -6.6865 10.9326 21 1 8.6760 -6.1899 12.8310 22 1 8.4749 -8.3187 11.6874 23 16 5.9410 -1.6511 2.2985 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1299 1.4425 0.0005 31 1 1.6054 -1.7198 1.2951 32 1 1.7516 -0.1584 2.1369 33 1 3.9824 -0.4622 0.4319 34 1 5.7513 -3.0266 6.7731 35 1 5.6030 -4.5891 5.9334 36 1 5.9967 -5.0252 8.5638 37 1 5.9179 -6.5984 11.5064 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076610009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:57 Heat of formation + Delta-G solvation = -5.947819 kcal Electronic energy + Delta-G solvation = -20147.900448 eV Core-core repulsion = 16791.431763 eV Total energy + Delta-G solvation = -3356.468685 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.077 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.53814 -40.16887 -38.48157 -36.10676 -35.26479 -33.44953 -31.75950 -30.85679 -28.07530 -27.57339 -26.69441 -25.57312 -22.19262 -21.57601 -21.41259 -20.38789 -19.96712 -18.32246 -17.90424 -17.63234 -16.78158 -16.55298 -16.42028 -16.23597 -15.84133 -15.64535 -14.91113 -14.57481 -14.39187 -14.33777 -14.25457 -13.85242 -13.53069 -13.48017 -12.98864 -12.92047 -12.49679 -12.45536 -12.16995 -12.10105 -11.98955 -11.82633 -11.66237 -11.62778 -11.59278 -11.12841 -10.64517 -10.64350 -10.12319 -9.67413 -8.72891 -8.52347 -6.02682 -0.75763 -0.29199 -0.03166 0.24336 0.96204 1.21494 1.34506 1.43295 1.58010 1.86334 1.97742 2.27732 2.99948 3.13644 3.52236 3.72943 3.91517 3.99480 4.05941 4.13476 4.15434 4.35994 4.55102 4.64825 4.70446 4.81974 4.96691 5.02374 5.20846 5.35664 5.37757 5.39022 5.58567 5.88378 6.12272 6.44656 6.96837 7.01453 7.39505 7.91097 8.64834 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.033449 B = 0.002154 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.900501 B =12993.524159 C =13716.349176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.150 4.150 4 C 0.135 3.865 5 N -0.669 5.669 6 C 0.312 3.688 7 N -0.391 5.391 8 N -0.290 5.290 9 C -0.012 4.012 10 S 0.086 5.914 11 C -0.121 4.121 12 C 0.453 3.547 13 O -0.616 6.616 14 N -0.555 5.555 15 C -0.336 4.336 16 H 0.088 0.912 17 C -0.011 4.011 18 N -0.916 5.916 19 Si 0.999 3.001 20 H -0.269 1.269 21 H -0.270 1.270 22 H -0.270 1.270 23 S 0.121 5.879 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.429 0.571 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.399 0.601 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.999 13.762 -23.319 28.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.208 4.208 4 C 0.010 3.990 5 N -0.312 5.312 6 C -0.072 4.072 7 N -0.230 5.230 8 N -0.119 5.119 9 C -0.412 4.412 10 S 0.312 5.688 11 C -0.274 4.274 12 C 0.239 3.761 13 O -0.504 6.504 14 N -0.191 5.191 15 C -0.466 4.466 16 H 0.105 0.895 17 C -0.212 4.212 18 N -0.556 5.556 19 Si 0.822 3.178 20 H -0.194 1.194 21 H -0.195 1.195 22 H -0.196 1.196 23 S 0.354 5.646 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.270 0.730 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.233 0.767 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.783 13.621 -23.260 28.349 hybrid contribution -1.292 -0.408 1.030 1.702 sum -10.075 13.212 -22.230 27.753 Atomic orbital electron populations 1.21769 0.93256 1.02473 1.02838 1.21322 0.97174 0.96703 0.96505 1.21898 1.01195 0.95099 1.02589 1.21670 0.76939 1.00837 0.99574 1.44074 1.07029 1.60753 1.19394 1.26199 0.92667 0.95274 0.93032 1.75042 1.24546 1.20893 1.02568 1.75436 0.97699 1.17013 1.21728 1.30862 1.01376 1.06538 1.02461 1.86240 0.98956 1.67468 1.16110 1.23526 1.01412 1.05395 0.97051 1.19533 0.88742 0.84177 0.83646 1.90536 1.19445 1.64323 1.76050 1.41805 1.10335 1.49778 1.17161 1.19807 0.90932 1.35175 1.00654 0.89451 1.26161 0.99044 0.97128 0.98818 1.69688 1.15886 1.44083 1.25904 0.84787 0.77665 0.77970 0.77412 1.19373 1.19549 1.19555 1.85198 1.02872 1.59661 1.16875 0.92566 0.90821 0.92337 0.89129 0.91076 0.92987 0.92342 0.92092 0.92275 0.73016 0.85967 0.85952 0.76654 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.19 71.98 0.66 -0.36 16 2 C -0.10 -0.72 2.96 -10.79 -0.03 -0.75 16 3 C -0.15 -0.99 9.07 71.98 0.65 -0.33 16 4 C 0.14 1.81 5.37 86.38 0.46 2.27 16 5 N -0.67 -9.74 5.46 -346.38 -1.89 -11.63 16 6 C 0.31 7.19 8.42 179.22 1.51 8.70 16 7 N -0.39 -12.12 11.68 -56.29 -0.66 -12.78 16 8 N -0.29 -9.91 11.62 -55.47 -0.64 -10.56 16 9 C -0.01 -0.38 7.82 130.57 1.02 0.64 16 10 S 0.09 2.93 21.30 -56.49 -1.20 1.73 16 11 C -0.12 -4.53 6.03 71.24 0.43 -4.10 16 12 C 0.45 21.79 7.80 87.66 0.68 22.47 16 13 O -0.62 -33.49 15.44 -3.08 -0.05 -33.54 16 14 N -0.56 -28.63 5.29 -306.98 -1.62 -30.25 16 15 C -0.34 -18.88 9.68 84.04 0.81 -18.06 16 16 H 0.09 5.17 7.16 -2.91 -0.02 5.15 16 17 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 18 N -0.92 -49.23 13.05 21.66 0.28 -48.95 16 19 Si 1.00 42.32 29.55 68.60 2.03 44.35 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 23 S 0.12 2.69 23.39 -56.49 -1.32 1.37 16 24 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.34 7.18 -2.39 -0.02 0.32 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.43 3.62 7.78 -92.71 -0.72 2.90 16 34 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 35 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 36 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 37 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -69.02 349.68 1.26 -67.76 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -0.34 Total: 22.13 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 6.67 Total: 10.38 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -4.53 Total: -114.17 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.05 Total: -33.54 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -2.52 Total: 3.09 kcal Total: -69.02 1.26 -67.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076610009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.810 kcal (2) G-P(sol) polarization free energy of solvation -69.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds