Wall clock time and date at job start Tue Mar 31 2020 11:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 119.99904 * 2 1 4 4 H 1.48508 * 109.47134 * 269.99796 * 3 2 1 5 5 H 1.48498 * 109.47337 * 29.99734 * 3 2 1 6 6 H 1.48501 * 109.47097 * 150.00304 * 3 2 1 7 7 C 1.38655 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99867 * 359.97438 * 7 2 1 9 9 O 1.34827 * 120.00053 * 179.97438 * 7 2 1 10 10 C 1.35755 * 116.99699 * 185.06002 * 9 7 2 11 11 C 1.38895 * 120.06944 * 353.78180 * 10 9 7 12 12 C 1.38089 * 119.92615 * 179.72295 * 11 10 9 13 13 C 1.38316 * 120.06725 * 0.56638 * 12 11 10 14 14 C 1.38273 * 120.14294 * 359.68716 * 13 12 11 15 15 C 1.50703 * 119.96851 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47236 * 270.02065 * 15 14 13 17 17 O 1.20829 * 119.99913 * 359.97438 * 16 15 14 18 18 O 1.34252 * 120.00067 * 179.97438 * 16 15 14 19 19 C 1.35961 * 117.00013 * 185.32032 * 18 16 15 20 20 C 1.38723 * 120.02411 * 246.35309 * 19 18 16 21 21 C 1.38140 * 119.96373 * 179.76945 * 20 19 18 22 22 C 1.38459 * 120.03122 * 0.50246 * 21 20 19 23 23 F 1.35106 * 119.96861 * 179.72125 * 22 21 20 24 24 C 1.38462 * 120.06221 * 359.75329 * 22 21 20 25 25 C 1.38139 * 120.02724 * 359.97438 * 24 22 21 26 26 C 1.38120 * 120.06604 * 0.03989 * 14 13 12 27 27 H 0.97006 * 119.99927 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.03875 * 359.97438 * 11 10 9 29 29 H 1.08003 * 119.96197 * 180.27905 * 12 11 10 30 30 H 1.08004 * 119.92821 * 179.70238 * 13 12 11 31 31 H 1.09003 * 109.46658 * 30.02211 * 15 14 13 32 32 H 1.09001 * 109.47203 * 150.01846 * 15 14 13 33 33 H 1.07997 * 120.01848 * 0.02562 * 20 19 18 34 34 H 1.08001 * 119.97988 * 180.25682 * 21 20 19 35 35 H 1.08006 * 119.98545 * 179.97438 * 24 22 21 36 36 H 1.08000 * 120.01045 * 179.97438 * 25 24 22 37 37 H 1.08008 * 120.03357 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3571 -1.2008 -0.0011 10 6 3.9733 -2.4056 -0.1083 11 6 3.2245 -3.5751 -0.0811 12 6 3.8538 -4.7989 -0.1961 13 6 5.2294 -4.8612 -0.3265 14 6 5.9782 -3.6990 -0.3486 15 6 7.4767 -3.7715 -0.4914 16 6 8.1080 -3.8542 0.8744 17 8 7.4126 -3.8538 1.8624 18 8 9.4432 -3.9283 0.9933 19 6 9.9422 -4.1125 2.2446 20 6 10.6925 -3.1131 2.8467 21 6 11.1948 -3.2997 4.1200 22 6 10.9585 -4.4876 4.7909 23 9 11.4552 -4.6709 6.0339 24 6 10.2143 -5.4880 4.1889 25 6 9.7060 -5.3019 2.9180 26 6 5.3541 -2.4716 -0.2396 27 1 -0.4850 0.8401 0.0004 28 1 2.1510 -3.5273 0.0258 29 1 3.2717 -5.7085 -0.1796 30 1 5.7198 -5.8198 -0.4115 31 1 7.7441 -4.6560 -1.0696 32 1 7.8363 -2.8796 -1.0045 33 1 10.8803 -2.1880 2.3221 34 1 11.7755 -2.5201 4.5907 35 1 10.0311 -6.4143 4.7133 36 1 9.1259 -6.0826 2.4486 37 1 5.9394 -1.5641 -0.2574 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089708607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:05 Heat of formation + Delta-G solvation = -92.246372 kcal Electronic energy + Delta-G solvation = -24389.905374 eV Core-core repulsion = 20399.284968 eV Total energy + Delta-G solvation = -3990.620406 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.22815 -41.51352 -39.39636 -38.71958 -37.14737 -36.43834 -32.58702 -32.32116 -31.62732 -30.14740 -29.51145 -27.53652 -25.25553 -23.87691 -23.49803 -21.94749 -21.48349 -20.40465 -18.48728 -17.94928 -17.78355 -17.41077 -17.29052 -16.88784 -15.89882 -15.74212 -15.26196 -15.01148 -14.81477 -14.30950 -14.09176 -14.02397 -13.82521 -13.66316 -13.58221 -13.20053 -12.73067 -12.64846 -12.43978 -12.23536 -12.02690 -11.78683 -11.40060 -11.08525 -10.95510 -10.87770 -10.78893 -10.60249 -10.19526 -9.56342 -9.44109 -8.90744 -8.88923 -8.27306 -7.43879 -6.43725 -4.10823 0.54790 0.78664 1.80722 2.06541 2.19415 2.60365 3.20486 3.23873 3.26551 3.39073 3.86435 4.21927 4.30331 4.31926 4.42858 4.57999 4.66045 4.78788 4.92205 4.93584 5.06143 5.18602 5.40243 5.44120 5.49685 5.59893 5.68251 5.69949 5.74471 5.85950 6.03785 6.16548 6.17065 6.43763 6.52142 6.69830 6.98712 7.10965 7.23986 7.52631 7.70795 7.76176 8.00459 8.91369 9.52848 10.63885 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.017100 B = 0.002752 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.045810 B =10173.717997 C =10905.038314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.107 0.893 9 O -0.217 6.217 10 C 0.160 3.840 11 C -0.212 4.212 12 C -0.075 4.075 13 C -0.186 4.186 14 C -0.050 4.050 15 C -0.060 4.060 16 C 0.455 3.545 17 O -0.467 6.467 18 O -0.297 6.297 19 C 0.081 3.919 20 C -0.090 4.090 21 C -0.138 4.138 22 C 0.096 3.904 23 F -0.137 7.137 24 C -0.136 4.136 25 C -0.096 4.096 26 C -0.172 4.172 27 H 0.280 0.720 28 H 0.134 0.866 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.876 -9.599 2.523 24.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.466 4.466 8 H 0.124 0.876 9 O -0.122 6.122 10 C 0.108 3.892 11 C -0.231 4.231 12 C -0.094 4.094 13 C -0.205 4.205 14 C -0.050 4.050 15 C -0.097 4.097 16 C 0.297 3.703 17 O -0.349 6.349 18 O -0.213 6.213 19 C 0.039 3.961 20 C -0.108 4.108 21 C -0.157 4.157 22 C 0.077 3.923 23 F -0.116 7.116 24 C -0.155 4.155 25 C -0.114 4.114 26 C -0.191 4.191 27 H 0.090 0.910 28 H 0.152 0.848 29 H 0.130 0.870 30 H 0.125 0.875 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 21.528 -9.211 2.933 23.599 hybrid contribution 0.117 0.577 0.369 0.695 sum 21.646 -8.634 3.302 23.537 Atomic orbital electron populations 1.69645 1.05570 1.28525 1.47949 1.24461 0.95022 0.98832 0.95637 0.86187 0.80375 0.81435 0.78956 1.19832 1.20742 1.18367 1.20765 0.76816 0.96662 1.52313 0.87603 1.83570 1.22665 1.25573 1.80376 1.18992 0.91471 0.85626 0.93136 1.21347 1.01309 0.91933 1.08544 1.20754 0.94073 0.96848 0.97692 1.20435 0.94051 0.96348 1.09640 1.18631 0.91407 0.93375 1.01615 1.20279 0.92666 1.06417 0.90337 1.24396 0.79342 0.73058 0.93483 1.90774 1.61831 1.42484 1.39797 1.84671 1.25228 1.83024 1.28410 1.18570 0.98318 0.94054 0.85127 1.20958 0.97838 0.98311 0.93730 1.21013 1.02695 0.97055 0.94937 1.17729 0.98078 0.95567 0.80949 1.91517 1.85581 1.95612 1.38859 1.21005 0.99149 0.99751 0.95608 1.21192 0.98975 0.96991 0.94286 1.19965 0.92196 0.96944 1.09990 0.91016 0.84827 0.86952 0.87480 0.86673 0.86661 0.83850 0.83779 0.83930 0.84409 0.86567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.35 13.96 55.48 0.77 -24.58 16 2 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 3 Si 0.90 21.63 28.62 -169.99 -4.86 16.76 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.39 -10.97 9.95 30.89 0.31 -10.66 16 8 H 0.11 3.03 5.44 -52.48 -0.29 2.75 16 9 O -0.22 -5.71 8.59 0.04 0.00 -5.71 16 10 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 11 C -0.21 -4.55 9.17 -39.39 -0.36 -4.91 16 12 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 13 C -0.19 -3.00 9.70 -39.54 -0.38 -3.38 16 14 C -0.05 -0.81 4.37 -104.65 -0.46 -1.27 16 15 C -0.06 -0.69 5.94 -29.04 -0.17 -0.86 16 16 C 0.45 6.08 7.71 36.00 0.28 6.36 16 17 O -0.47 -8.09 15.35 -18.75 -0.29 -8.37 16 18 O -0.30 -3.46 10.05 -23.70 -0.24 -3.70 16 19 C 0.08 0.92 5.35 -39.23 -0.21 0.71 16 20 C -0.09 -0.88 9.99 -39.44 -0.39 -1.27 16 21 C -0.14 -1.25 10.02 -39.54 -0.40 -1.64 16 22 C 0.10 0.96 7.30 -39.42 -0.29 0.67 16 23 F -0.14 -1.42 17.27 2.25 0.04 -1.38 16 24 C -0.14 -1.30 10.02 -39.54 -0.40 -1.70 16 25 C -0.10 -1.01 9.17 -39.45 -0.36 -1.37 16 26 C -0.17 -3.34 9.65 -39.40 -0.38 -3.72 16 27 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.13 3.00 5.65 -52.49 -0.30 2.70 16 29 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 30 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 31 H 0.12 0.96 8.09 -51.93 -0.42 0.55 16 32 H 0.12 1.08 8.08 -51.93 -0.42 0.66 16 33 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 36 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 37 H 0.12 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 337.62 15.07 5.09 5.09 Total: -1.00 -32.08 337.62 -6.97 -39.05 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -3.52 Total: 2.52 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -3.97 Total: -19.68 kcal Atomic # 7 Polarization: -25.35 SS G_CDS: 0.77 Total: -24.58 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.53 Total: -17.79 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.86 Total: 16.76 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.08 -6.97 -39.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089708607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.194 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds