Wall clock time and date at job start Tue Mar 31 2020 11:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 119.99904 * 2 1 4 4 H 1.48508 * 109.47134 * 269.99796 * 3 2 1 5 5 H 1.48498 * 109.47337 * 29.99734 * 3 2 1 6 6 H 1.48501 * 109.47097 * 150.00304 * 3 2 1 7 7 C 1.38655 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99867 * 359.97438 * 7 2 1 9 9 O 1.34827 * 120.00053 * 179.97438 * 7 2 1 10 10 C 1.35755 * 116.99699 * 185.06002 * 9 7 2 11 11 C 1.38895 * 120.06944 * 353.78180 * 10 9 7 12 12 C 1.38089 * 119.92615 * 179.72295 * 11 10 9 13 13 C 1.38316 * 120.06725 * 0.56638 * 12 11 10 14 14 C 1.38273 * 120.14294 * 359.68716 * 13 12 11 15 15 C 1.50703 * 119.96851 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47236 * 270.02065 * 15 14 13 17 17 O 1.20829 * 119.99913 * 359.97438 * 16 15 14 18 18 O 1.34252 * 120.00067 * 179.97438 * 16 15 14 19 19 C 1.35961 * 117.00013 * 185.32032 * 18 16 15 20 20 C 1.38723 * 120.02411 * 246.35309 * 19 18 16 21 21 C 1.38140 * 119.96373 * 179.76945 * 20 19 18 22 22 C 1.38459 * 120.03122 * 0.50246 * 21 20 19 23 23 F 1.35106 * 119.96861 * 179.72125 * 22 21 20 24 24 C 1.38462 * 120.06221 * 359.75329 * 22 21 20 25 25 C 1.38139 * 120.02724 * 359.97438 * 24 22 21 26 26 C 1.38120 * 120.06604 * 0.03989 * 14 13 12 27 27 H 0.97006 * 119.99927 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.03875 * 359.97438 * 11 10 9 29 29 H 1.08003 * 119.96197 * 180.27905 * 12 11 10 30 30 H 1.08004 * 119.92821 * 179.70238 * 13 12 11 31 31 H 1.09003 * 109.46658 * 30.02211 * 15 14 13 32 32 H 1.09001 * 109.47203 * 150.01846 * 15 14 13 33 33 H 1.07997 * 120.01848 * 0.02562 * 20 19 18 34 34 H 1.08001 * 119.97988 * 180.25682 * 21 20 19 35 35 H 1.08006 * 119.98545 * 179.97438 * 24 22 21 36 36 H 1.08000 * 120.01045 * 179.97438 * 25 24 22 37 37 H 1.08008 * 120.03357 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3571 -1.2008 -0.0011 10 6 3.9733 -2.4056 -0.1083 11 6 3.2245 -3.5751 -0.0811 12 6 3.8538 -4.7989 -0.1961 13 6 5.2294 -4.8612 -0.3265 14 6 5.9782 -3.6990 -0.3486 15 6 7.4767 -3.7715 -0.4914 16 6 8.1080 -3.8542 0.8744 17 8 7.4126 -3.8538 1.8624 18 8 9.4432 -3.9283 0.9933 19 6 9.9422 -4.1125 2.2446 20 6 10.6925 -3.1131 2.8467 21 6 11.1948 -3.2997 4.1200 22 6 10.9585 -4.4876 4.7909 23 9 11.4552 -4.6709 6.0339 24 6 10.2143 -5.4880 4.1889 25 6 9.7060 -5.3019 2.9180 26 6 5.3541 -2.4716 -0.2396 27 1 -0.4850 0.8401 0.0004 28 1 2.1510 -3.5273 0.0258 29 1 3.2717 -5.7085 -0.1796 30 1 5.7198 -5.8198 -0.4115 31 1 7.7441 -4.6560 -1.0696 32 1 7.8363 -2.8796 -1.0045 33 1 10.8803 -2.1880 2.3221 34 1 11.7755 -2.5201 4.5907 35 1 10.0311 -6.4143 4.7133 36 1 9.1259 -6.0826 2.4486 37 1 5.9394 -1.5641 -0.2574 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089708607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:05 Heat of formation + Delta-G solvation = -109.218687 kcal Electronic energy + Delta-G solvation = -24390.641349 eV Core-core repulsion = 20399.284968 eV Total energy + Delta-G solvation = -3991.356381 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.00242 -42.45287 -40.93131 -39.72401 -38.50610 -37.63850 -34.49767 -33.72992 -32.34481 -31.23161 -30.85455 -28.78028 -27.21857 -24.81701 -24.28003 -23.36556 -22.70023 -21.71695 -19.68353 -19.38189 -18.94728 -18.74293 -18.21529 -17.95072 -16.90154 -16.81397 -16.67305 -16.31123 -15.86331 -15.73180 -15.64267 -15.26349 -14.91940 -14.72660 -14.61468 -14.35733 -14.18518 -14.07742 -13.92591 -13.30800 -13.06790 -13.03003 -12.73320 -12.57088 -12.48047 -12.39313 -11.94921 -11.91389 -11.67513 -11.33677 -10.92016 -10.27972 -9.78594 -9.64666 -9.10190 -8.51093 -6.24051 -0.25441 0.07171 0.39515 0.67006 1.07481 1.30106 1.34068 1.50789 1.64796 2.27123 2.47756 2.76904 3.00846 3.12224 3.13207 3.56949 3.62552 3.70700 3.86269 4.04659 4.10305 4.19783 4.25840 4.37965 4.48907 4.60811 4.64256 4.68620 4.77254 4.92865 4.96146 4.96732 5.10275 5.20160 5.33867 5.37579 5.59531 5.68471 5.72743 5.74846 5.89639 6.21682 6.73837 6.83241 7.57416 8.60669 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.017100 B = 0.002752 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.045810 B =10173.717997 C =10905.038314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.971 3.029 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.400 4.400 8 H 0.080 0.920 9 O -0.246 6.246 10 C 0.117 3.883 11 C -0.235 4.235 12 C -0.078 4.078 13 C -0.165 4.165 14 C -0.042 4.042 15 C -0.056 4.056 16 C 0.463 3.537 17 O -0.515 6.515 18 O -0.285 6.285 19 C 0.054 3.946 20 C -0.094 4.094 21 C -0.137 4.137 22 C 0.084 3.916 23 F -0.141 7.141 24 C -0.140 4.140 25 C -0.105 4.105 26 C -0.177 4.177 27 H 0.285 0.715 28 H 0.107 0.893 29 H 0.142 0.858 30 H 0.154 0.846 31 H 0.161 0.839 32 H 0.143 0.857 33 H 0.162 0.838 34 H 0.168 0.832 35 H 0.160 0.840 36 H 0.145 0.855 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.424 -10.668 1.920 27.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.476 4.476 8 H 0.098 0.902 9 O -0.154 6.154 10 C 0.069 3.931 11 C -0.255 4.255 12 C -0.096 4.096 13 C -0.183 4.183 14 C -0.042 4.042 15 C -0.093 4.093 16 C 0.307 3.693 17 O -0.400 6.400 18 O -0.201 6.201 19 C 0.013 3.987 20 C -0.112 4.112 21 C -0.155 4.155 22 C 0.065 3.935 23 F -0.120 7.120 24 C -0.158 4.158 25 C -0.123 4.123 26 C -0.196 4.196 27 H 0.094 0.906 28 H 0.125 0.875 29 H 0.160 0.840 30 H 0.172 0.828 31 H 0.179 0.821 32 H 0.161 0.839 33 H 0.179 0.821 34 H 0.185 0.815 35 H 0.178 0.822 36 H 0.163 0.837 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 25.125 -10.322 2.310 27.261 hybrid contribution -0.730 0.579 0.577 1.096 sum 24.396 -9.743 2.887 26.428 Atomic orbital electron populations 1.69731 1.06905 1.29607 1.50241 1.25281 0.95885 1.02165 0.95531 0.85219 0.78669 0.77393 0.79443 1.18634 1.19234 1.19011 1.20707 0.78103 0.96127 1.52656 0.90201 1.83508 1.21230 1.27394 1.83270 1.19589 0.93131 0.85172 0.95242 1.21379 1.00339 0.93505 1.10232 1.21134 0.95525 0.96298 0.96642 1.21063 0.93234 0.98425 1.05549 1.19133 0.94387 0.91933 0.98730 1.20427 0.88783 1.10042 0.90005 1.24643 0.79639 0.71585 0.93405 1.90778 1.62910 1.44946 1.41393 1.84662 1.24175 1.82552 1.28692 1.18890 0.99372 0.95020 0.85430 1.21216 0.97311 0.98687 0.93984 1.21295 1.02290 0.97277 0.94653 1.17963 0.98366 0.96197 0.80952 1.91508 1.85662 1.95677 1.39131 1.21230 0.98692 1.00473 0.95440 1.21348 0.99210 0.97134 0.94646 1.20319 0.90722 0.99115 1.09420 0.90556 0.87499 0.84017 0.82822 0.82149 0.83875 0.82078 0.81497 0.82194 0.83678 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.79 13.96 21.61 0.30 -55.49 16 2 C 0.01 0.56 5.49 84.83 0.47 1.03 16 3 Si 0.97 45.89 28.62 68.60 1.96 47.85 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 7 C -0.40 -23.92 9.95 67.92 0.68 -23.24 16 8 H 0.08 5.01 5.44 -2.91 -0.02 4.99 16 9 O -0.25 -13.61 8.59 -22.77 -0.20 -13.80 16 10 C 0.12 5.56 6.65 22.58 0.15 5.71 16 11 C -0.24 -10.46 9.17 22.39 0.21 -10.25 16 12 C -0.08 -2.65 10.04 22.25 0.22 -2.42 16 13 C -0.16 -4.63 9.70 22.30 0.22 -4.41 16 14 C -0.04 -1.20 4.37 -19.88 -0.09 -1.29 16 15 C -0.06 -1.00 5.94 29.10 0.17 -0.83 16 16 C 0.46 10.73 7.71 71.23 0.55 11.28 16 17 O -0.51 -16.69 15.35 21.96 0.34 -16.35 16 18 O -0.29 -5.71 10.05 4.24 0.04 -5.67 16 19 C 0.05 1.11 5.35 22.50 0.12 1.23 16 20 C -0.09 -1.61 9.99 22.36 0.22 -1.39 16 21 C -0.14 -2.16 10.02 22.30 0.22 -1.94 16 22 C 0.08 1.53 7.30 22.38 0.16 1.70 16 23 F -0.14 -2.70 17.27 44.97 0.78 -1.93 16 24 C -0.14 -2.42 10.02 22.30 0.22 -2.20 16 25 C -0.10 -2.00 9.17 22.36 0.21 -1.80 16 26 C -0.18 -6.70 9.65 22.39 0.22 -6.48 16 27 H 0.28 15.74 8.31 -92.70 -0.77 14.97 16 28 H 0.11 5.24 5.65 -2.91 -0.02 5.22 16 29 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 30 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 31 H 0.16 1.54 8.09 -2.39 -0.02 1.52 16 32 H 0.14 1.90 8.08 -2.39 -0.02 1.88 16 33 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 37 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -74.99 337.62 8.29 -66.71 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.12 Total: 13.97 kcal Atomic # 6 Polarization: -39.25 SS G_CDS: 3.95 Total: -35.30 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.30 Total: -55.49 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: 0.18 Total: -35.82 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.93 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.96 Total: 47.85 kcal Total: -74.99 8.29 -66.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089708607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.512 kcal (2) G-P(sol) polarization free energy of solvation -74.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds