Wall clock time and date at job start Tue Mar 31 2020 11:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86798 * 120.00570 * 2 1 4 4 H 1.48497 * 109.47272 * 269.99990 * 3 2 1 5 5 H 1.48498 * 109.47120 * 30.00110 * 3 2 1 6 6 H 1.48505 * 109.47078 * 149.99890 * 3 2 1 7 7 C 1.38664 * 119.99500 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99910 * 180.02562 * 7 2 1 9 9 O 1.34822 * 119.99992 * 359.97438 * 7 2 1 10 10 C 1.35751 * 117.00160 * 174.90566 * 9 7 2 11 11 C 1.38894 * 120.06487 * 5.96146 * 10 9 7 12 12 C 1.38088 * 119.92812 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.06743 * 359.75200 * 12 11 10 14 14 C 1.38282 * 120.13870 * 0.50340 * 13 12 11 15 15 C 1.50700 * 119.96426 * 179.77071 * 14 13 12 16 16 C 1.50694 * 109.47025 * 269.72551 * 15 14 13 17 17 O 1.20830 * 120.00546 * 359.97438 * 16 15 14 18 18 O 1.34271 * 120.00088 * 180.02562 * 16 15 14 19 19 C 1.35922 * 116.99818 * 185.33656 * 18 16 15 20 20 C 1.38773 * 120.04225 * 246.77506 * 19 18 16 21 21 C 1.38125 * 119.99307 * 179.97438 * 20 19 18 22 22 C 1.38259 * 120.08238 * 359.97438 * 21 20 19 23 23 C 1.38477 * 120.08205 * 0.04383 * 22 21 20 24 24 F 1.35099 * 119.99502 * 179.97438 * 23 22 21 25 25 C 1.38386 * 120.00672 * 359.95658 * 23 22 21 26 26 C 1.38119 * 120.06763 * 359.49116 * 14 13 12 27 27 H 0.97003 * 119.99616 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.03884 * 359.95687 * 11 10 9 29 29 H 1.07997 * 119.96144 * 179.97438 * 12 11 10 30 30 H 1.08005 * 119.93165 * 180.27962 * 13 12 11 31 31 H 1.08996 * 109.47057 * 149.72528 * 15 14 13 32 32 H 1.08995 * 109.46971 * 29.72456 * 15 14 13 33 33 H 1.08001 * 120.00022 * 359.96082 * 20 19 18 34 34 H 1.08002 * 119.95966 * 180.02562 * 21 20 19 35 35 H 1.08001 * 119.95758 * 180.02562 * 22 21 20 36 36 H 1.07994 * 120.04108 * 180.30196 * 25 23 22 37 37 H 1.08000 * 120.03365 * 180.22816 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4473 2.6526 0.7000 6 1 3.5473 1.4399 0.7001 7 6 2.0088 -1.2009 -0.0005 8 1 3.0887 -1.2010 -0.0001 9 8 1.3345 -2.3685 -0.0005 10 6 2.0696 -3.5046 -0.1085 11 6 3.4569 -3.4405 -0.0879 12 6 4.2018 -4.5980 -0.1974 13 6 3.5677 -5.8210 -0.3223 14 6 2.1867 -5.8876 -0.3484 15 6 1.5001 -7.2216 -0.4898 16 6 1.2851 -7.5236 -1.9504 17 8 1.6515 -6.7362 -2.7905 18 8 0.6856 -8.6672 -2.3184 19 6 0.6225 -8.9300 -3.6505 20 6 -0.6045 -8.9441 -4.2986 21 6 -0.6673 -9.2107 -5.6524 22 6 0.4912 -9.4633 -6.3634 23 6 1.7173 -9.4505 -5.7199 24 9 2.8482 -9.6980 -6.4164 25 6 1.7844 -9.1837 -4.3637 26 6 1.4361 -4.7334 -0.2392 27 1 -0.4850 0.8401 -0.0004 28 1 3.9525 -2.4863 0.0133 29 1 5.2805 -4.5487 -0.1819 30 1 4.1525 -6.7255 -0.4032 31 1 0.5373 -7.1905 0.0203 32 1 2.1216 -7.9990 -0.0457 33 1 -1.5102 -8.7467 -3.7444 34 1 -1.6225 -9.2211 -6.1563 35 1 0.4398 -9.6711 -7.4220 36 1 2.7407 -9.1688 -3.8623 37 1 0.3575 -4.7864 -0.2559 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089708746.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:08 Heat of formation + Delta-G solvation = -93.722161 kcal Electronic energy + Delta-G solvation = -24462.979173 eV Core-core repulsion = 20472.294772 eV Total energy + Delta-G solvation = -3990.684401 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.17636 -41.46506 -39.25726 -38.62648 -37.05154 -36.32344 -32.55752 -32.16070 -31.09655 -30.46070 -29.28963 -27.50377 -25.33090 -24.00704 -23.08897 -21.83919 -21.53328 -20.49068 -18.62595 -17.73299 -17.50560 -17.18326 -16.94204 -16.61342 -16.07549 -15.81340 -15.67579 -15.08314 -14.59614 -14.43669 -14.24268 -13.83194 -13.78337 -13.60179 -13.40511 -12.77426 -12.74068 -12.46956 -12.27478 -11.99756 -11.85759 -11.62332 -11.33136 -11.26381 -10.90919 -10.85673 -10.68890 -10.54076 -10.45557 -9.38325 -9.30923 -8.98660 -8.85350 -8.17502 -7.27654 -6.45708 -4.04849 0.62879 0.81418 1.90303 2.12802 2.31855 2.65632 3.12502 3.14056 3.18119 3.31344 3.90801 3.95880 4.41295 4.43396 4.60569 4.64440 4.73165 4.83518 4.97503 5.04923 5.10631 5.37913 5.44280 5.56856 5.63402 5.67934 5.68970 5.86117 5.86942 5.90246 6.11159 6.22049 6.27345 6.57575 6.59086 6.84676 7.02666 7.16300 7.31407 7.39403 7.73913 7.77057 7.98814 8.99885 9.69051 10.72343 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.017732 B = 0.002689 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.713598 B =10411.868553 C =10772.610094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.154 3.846 11 C -0.226 4.226 12 C -0.074 4.074 13 C -0.195 4.195 14 C -0.048 4.048 15 C -0.059 4.059 16 C 0.456 3.544 17 O -0.465 6.465 18 O -0.298 6.298 19 C 0.122 3.878 20 C -0.129 4.129 21 C -0.075 4.075 22 C -0.157 4.157 23 C 0.116 3.884 24 F -0.135 7.135 25 C -0.163 4.163 26 C -0.171 4.171 27 H 0.270 0.730 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.639 -19.283 -6.573 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.100 3.900 11 C -0.245 4.245 12 C -0.092 4.092 13 C -0.214 4.214 14 C -0.049 4.049 15 C -0.096 4.096 16 C 0.298 3.702 17 O -0.346 6.346 18 O -0.214 6.214 19 C 0.080 3.920 20 C -0.148 4.148 21 C -0.093 4.093 22 C -0.176 4.176 23 C 0.097 3.903 24 F -0.113 7.113 25 C -0.183 4.183 26 C -0.190 4.190 27 H 0.080 0.920 28 H 0.146 0.854 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.357 -18.783 -6.850 19.996 hybrid contribution 0.825 0.826 -0.253 1.194 sum 1.182 -17.957 -7.103 19.347 Atomic orbital electron populations 1.70038 1.05962 1.27675 1.46054 1.25289 0.95851 0.98824 0.96520 0.85710 0.78913 0.80052 0.78748 1.19859 1.20239 1.19181 1.21324 0.91800 0.80782 1.52929 0.89064 1.83972 1.34280 1.11389 1.78453 1.19251 0.90255 0.87987 0.92484 1.21225 0.93846 0.99070 1.10359 1.20696 0.98520 0.92198 0.97789 1.20372 0.93105 0.97222 1.10686 1.18634 0.93377 0.91536 1.01305 1.20287 1.04035 0.97511 0.87796 1.24426 0.74226 0.78102 0.93440 1.90782 1.44485 1.46153 1.53192 1.84669 1.72813 1.41503 1.22419 1.18238 0.92986 0.98504 0.82262 1.21207 0.97250 1.01637 0.94674 1.20886 0.98388 0.97024 0.93010 1.21235 0.91073 1.03829 1.01420 1.17374 0.82506 1.01126 0.89327 1.91524 1.49423 1.91622 1.78775 1.21271 0.99706 1.03822 0.93455 1.19965 0.99205 0.89930 1.09915 0.92012 0.85448 0.87258 0.87701 0.86598 0.86745 0.84124 0.83926 0.84174 0.84228 0.86550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.37 13.67 55.48 0.76 -24.61 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.39 -11.03 9.49 30.89 0.29 -10.73 16 8 H 0.09 2.37 5.21 -52.49 -0.27 2.10 16 9 O -0.18 -5.09 9.76 0.07 0.00 -5.09 16 10 C 0.15 3.75 6.65 -39.11 -0.26 3.49 16 11 C -0.23 -4.96 9.17 -39.39 -0.36 -5.32 16 12 C -0.07 -1.37 10.04 -39.60 -0.40 -1.77 16 13 C -0.19 -3.35 9.70 -39.53 -0.38 -3.74 16 14 C -0.05 -0.84 4.37 -104.65 -0.46 -1.30 16 15 C -0.06 -0.75 5.94 -29.04 -0.17 -0.92 16 16 C 0.46 6.67 7.71 36.00 0.28 6.95 16 17 O -0.46 -8.70 15.35 -18.75 -0.29 -8.98 16 18 O -0.30 -3.80 10.05 -23.63 -0.24 -4.04 16 19 C 0.12 1.52 5.34 -39.22 -0.21 1.31 16 20 C -0.13 -1.32 9.99 -39.43 -0.39 -1.71 16 21 C -0.08 -0.63 10.04 -39.62 -0.40 -1.03 16 22 C -0.16 -1.44 10.02 -39.49 -0.40 -1.84 16 23 C 0.12 1.33 7.30 -39.44 -0.29 1.04 16 24 F -0.13 -1.61 17.27 2.25 0.04 -1.57 16 25 C -0.16 -2.02 9.16 -39.37 -0.36 -2.38 16 26 C -0.17 -3.60 9.65 -39.39 -0.38 -3.98 16 27 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.13 2.79 5.65 -52.49 -0.30 2.49 16 29 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 30 H 0.10 1.49 8.06 -52.48 -0.42 1.07 16 31 H 0.12 1.23 8.08 -51.93 -0.42 0.81 16 32 H 0.11 1.08 8.08 -51.93 -0.42 0.66 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.14 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 LS Contribution 338.75 15.07 5.10 5.10 Total: -1.00 -33.47 338.75 -7.13 -40.61 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -3.50 Total: 3.93 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -3.98 Total: -20.94 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 0.76 Total: -24.61 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.52 Total: -18.11 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.47 -7.13 -40.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089708746.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.115 kcal (2) G-P(sol) polarization free energy of solvation -33.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds