Wall clock time and date at job start Tue Mar 31 2020 11:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86804 * 119.99825 * 2 1 4 4 H 1.48497 * 109.47020 * 240.00137 * 3 2 1 5 5 H 1.48499 * 109.47260 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46636 * 120.00357 * 3 2 1 7 7 C 1.38652 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99968 * 179.97438 * 7 2 1 9 9 O 1.34822 * 120.00322 * 359.97438 * 7 2 1 10 10 C 1.35758 * 117.00347 * 185.10629 * 9 7 2 11 11 C 1.38878 * 120.06743 * 354.05557 * 10 9 7 12 12 C 1.38093 * 119.93191 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.06790 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.93182 * 179.97438 * 13 12 11 15 15 C 1.50691 * 109.47503 * 89.99612 * 14 13 12 16 16 O 1.20831 * 119.99837 * 0.02562 * 15 14 13 17 17 O 1.34248 * 120.00473 * 180.02562 * 15 14 13 18 18 C 1.35960 * 117.00726 * 185.34057 * 17 15 14 19 19 C 1.38708 * 120.03360 * 246.48125 * 18 17 15 20 20 C 1.38134 * 119.97293 * 179.76687 * 19 18 17 21 21 C 1.38470 * 120.02872 * 0.50516 * 20 19 18 22 22 F 1.35096 * 119.96971 * 179.72380 * 21 20 19 23 23 C 1.38468 * 120.05707 * 359.74629 * 21 20 19 24 24 C 1.38137 * 120.02939 * 0.02562 * 23 21 20 25 25 C 1.38296 * 120.14029 * 0.24816 * 13 12 11 26 26 C 1.38102 * 120.06560 * 359.45572 * 25 13 12 27 27 H 0.96996 * 120.00254 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.03093 * 0.02562 * 11 10 9 29 29 H 1.07997 * 119.97016 * 180.02562 * 12 11 10 30 30 H 1.08998 * 109.46938 * 209.99917 * 14 13 12 31 31 H 1.09007 * 109.46706 * 329.99755 * 14 13 12 32 32 H 1.08002 * 120.00932 * 0.02562 * 19 18 17 33 33 H 1.07995 * 119.98776 * 180.25303 * 20 19 18 34 34 H 1.07997 * 119.97958 * 179.97438 * 23 21 20 35 35 H 1.07996 * 120.01248 * 179.97438 * 24 23 21 36 36 H 1.07998 * 119.97154 * 179.70575 * 25 13 12 37 37 H 1.08001 * 120.03539 * 180.27205 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1066 11 6 3.4571 -3.4403 0.0856 12 6 4.2022 -4.5979 0.1942 13 6 3.5685 -5.8203 0.3233 14 6 4.3847 -7.0817 0.4410 15 6 4.6717 -7.3606 1.8938 16 8 4.2558 -6.6121 2.7463 17 8 5.3896 -8.4406 2.2410 18 6 5.5178 -8.6955 3.5704 19 6 6.7601 -8.5966 4.1795 20 6 6.8881 -8.8511 5.5312 21 6 5.7789 -9.2150 6.2759 22 9 5.9065 -9.4691 7.5966 23 6 4.5392 -9.3192 5.6680 24 6 4.4075 -9.0607 4.3174 25 6 2.1873 -5.8883 0.3389 26 6 1.4366 -4.7336 0.2368 27 1 -0.4850 0.8400 0.0004 28 1 3.9525 -2.4860 -0.0156 29 1 5.2810 -4.5485 0.1783 30 1 3.8280 -7.9159 0.0140 31 1 5.3242 -6.9581 -0.0977 32 1 7.6261 -8.3166 3.5981 33 1 7.8544 -8.7701 6.0065 34 1 3.6750 -9.6036 6.2499 35 1 3.4406 -9.1424 3.8435 36 1 1.6952 -6.8448 0.4350 37 1 0.3580 -4.7869 0.2534 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110156352.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:28 Heat of formation + Delta-G solvation = -94.806841 kcal Electronic energy + Delta-G solvation = -24219.934567 eV Core-core repulsion = 20229.203130 eV Total energy + Delta-G solvation = -3990.731436 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.21006 -41.44207 -39.25325 -38.64364 -37.05441 -36.31310 -32.58636 -31.67518 -31.60358 -30.23776 -29.95468 -27.02850 -25.29479 -23.74104 -23.40139 -22.05351 -21.49411 -20.30022 -18.42921 -18.05104 -17.90782 -17.33074 -17.16942 -16.83937 -15.87828 -15.61558 -15.09021 -14.75154 -14.63011 -14.42987 -14.03225 -13.99725 -13.76831 -13.64412 -13.45510 -13.17284 -12.78311 -12.68863 -12.43849 -12.06221 -11.82627 -11.59851 -11.32450 -11.05065 -10.95694 -10.84947 -10.70288 -10.50835 -10.47016 -9.54128 -9.38779 -8.88808 -8.83766 -8.23125 -7.26277 -6.48785 -4.07512 0.58124 0.80872 2.04275 2.14663 2.18794 2.68696 3.11189 3.13045 3.15468 3.30307 3.88639 3.93980 4.34197 4.36633 4.48460 4.70469 4.81411 4.94062 5.00755 5.07503 5.12450 5.24485 5.45900 5.50696 5.58665 5.65013 5.69972 5.72887 5.76346 5.89286 6.15072 6.22204 6.34273 6.56368 6.63026 6.83857 6.99065 7.15763 7.27911 7.38882 7.75149 7.79996 7.95940 8.96507 9.65254 10.68893 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.019200 B = 0.002453 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.001010 B =11412.753276 C =11951.430990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.393 4.393 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.160 3.840 11 C -0.233 4.233 12 C -0.051 4.051 13 C -0.189 4.189 14 C -0.045 4.045 15 C 0.450 3.550 16 O -0.469 6.469 17 O -0.299 6.299 18 C 0.082 3.918 19 C -0.092 4.092 20 C -0.139 4.139 21 C 0.095 3.905 22 F -0.137 7.137 23 C -0.136 4.136 24 C -0.096 4.096 25 C -0.055 4.055 26 C -0.192 4.192 27 H 0.271 0.729 28 H 0.128 0.872 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.110 0.890 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.287 -18.487 5.585 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.077 6.077 10 C 0.106 3.894 11 C -0.253 4.253 12 C -0.070 4.070 13 C -0.190 4.190 14 C -0.083 4.083 15 C 0.292 3.708 16 O -0.351 6.351 17 O -0.216 6.216 18 C 0.040 3.960 19 C -0.110 4.110 20 C -0.157 4.157 21 C 0.076 3.924 22 F -0.116 7.116 23 C -0.155 4.155 24 C -0.115 4.115 25 C -0.074 4.074 26 C -0.211 4.211 27 H 0.081 0.919 28 H 0.146 0.854 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.128 0.872 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.710 -17.993 5.897 22.263 hybrid contribution 0.498 0.813 0.411 1.038 sum 12.209 -17.180 6.308 22.000 Atomic orbital electron populations 1.70024 1.05996 1.27912 1.45605 1.25305 0.95854 0.98890 0.96402 0.85773 0.78726 0.79663 0.79242 1.19439 1.20222 1.19436 1.21303 0.91828 0.80776 1.52999 0.89024 1.83974 1.34449 1.11513 1.77752 1.19412 0.90313 0.88061 0.91654 1.21110 0.93804 0.98812 1.11526 1.20533 0.98180 0.91671 0.96577 1.18602 0.93250 0.92477 1.14640 1.20121 1.02223 0.98551 0.87361 1.24817 0.74611 0.77479 0.93867 1.90758 1.46439 1.45695 1.52164 1.84692 1.68056 1.46078 1.22781 1.18584 0.93905 1.00695 0.82774 1.20936 0.97250 0.99109 0.93726 1.21002 0.98694 1.02319 0.93726 1.17727 0.94703 1.01895 0.78120 1.91512 1.96685 1.91660 1.31744 1.21013 0.96763 1.02684 0.94993 1.21208 0.98815 0.97939 0.93524 1.20417 0.92600 0.96870 0.97491 1.20163 0.99607 0.90233 1.11111 0.91873 0.85419 0.87577 0.87395 0.87458 0.83947 0.83849 0.83942 0.84403 0.87158 0.86361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.17 13.67 55.48 0.76 -24.41 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 20.43 29.55 -169.99 -5.02 15.41 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 7 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16 8 H 0.09 2.35 5.21 -52.48 -0.27 2.08 16 9 O -0.17 -4.96 9.76 0.05 0.00 -4.95 16 10 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 11 C -0.23 -5.04 9.17 -39.40 -0.36 -5.40 16 12 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 13 C -0.19 -3.08 4.38 -104.58 -0.46 -3.54 16 14 C -0.05 -0.53 5.94 -29.04 -0.17 -0.70 16 15 C 0.45 6.10 7.71 36.00 0.28 6.38 16 16 O -0.47 -8.24 15.35 -18.75 -0.29 -8.53 16 17 O -0.30 -3.55 10.05 -23.69 -0.24 -3.79 16 18 C 0.08 0.95 5.34 -39.23 -0.21 0.74 16 19 C -0.09 -0.89 9.98 -39.45 -0.39 -1.29 16 20 C -0.14 -1.25 10.02 -39.53 -0.40 -1.65 16 21 C 0.09 0.96 7.30 -39.41 -0.29 0.67 16 22 F -0.14 -1.44 17.27 2.25 0.04 -1.40 16 23 C -0.14 -1.34 10.02 -39.53 -0.40 -1.74 16 24 C -0.10 -1.05 9.18 -39.44 -0.36 -1.41 16 25 C -0.06 -0.96 9.69 -39.61 -0.38 -1.35 16 26 C -0.19 -4.02 9.99 -39.40 -0.39 -4.42 16 27 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.13 2.75 5.64 -52.49 -0.30 2.46 16 29 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.11 0.97 8.08 -51.93 -0.42 0.55 16 31 H 0.11 1.00 8.08 -51.92 -0.42 0.58 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 37 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 LS Contribution 338.74 15.07 5.10 5.10 Total: -1.00 -32.77 338.74 -7.13 -39.91 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -3.50 Total: 3.73 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -3.98 Total: -21.07 kcal Atomic # 7 Polarization: -25.17 SS G_CDS: 0.76 Total: -24.41 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.53 Total: -17.27 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.77 -7.13 -39.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110156352.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.901 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds