Wall clock time and date at job start Tue Mar 31 2020 11:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86804 * 119.99825 * 2 1 4 4 H 1.48497 * 109.47020 * 240.00137 * 3 2 1 5 5 H 1.48499 * 109.47260 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46636 * 120.00357 * 3 2 1 7 7 C 1.38652 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99968 * 179.97438 * 7 2 1 9 9 O 1.34822 * 120.00322 * 359.97438 * 7 2 1 10 10 C 1.35758 * 117.00347 * 185.10629 * 9 7 2 11 11 C 1.38878 * 120.06743 * 354.05557 * 10 9 7 12 12 C 1.38093 * 119.93191 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.06790 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.93182 * 179.97438 * 13 12 11 15 15 C 1.50691 * 109.47503 * 89.99612 * 14 13 12 16 16 O 1.20831 * 119.99837 * 0.02562 * 15 14 13 17 17 O 1.34248 * 120.00473 * 180.02562 * 15 14 13 18 18 C 1.35960 * 117.00726 * 185.34057 * 17 15 14 19 19 C 1.38708 * 120.03360 * 246.48125 * 18 17 15 20 20 C 1.38134 * 119.97293 * 179.76687 * 19 18 17 21 21 C 1.38470 * 120.02872 * 0.50516 * 20 19 18 22 22 F 1.35096 * 119.96971 * 179.72380 * 21 20 19 23 23 C 1.38468 * 120.05707 * 359.74629 * 21 20 19 24 24 C 1.38137 * 120.02939 * 0.02562 * 23 21 20 25 25 C 1.38296 * 120.14029 * 0.24816 * 13 12 11 26 26 C 1.38102 * 120.06560 * 359.45572 * 25 13 12 27 27 H 0.96996 * 120.00254 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.03093 * 0.02562 * 11 10 9 29 29 H 1.07997 * 119.97016 * 180.02562 * 12 11 10 30 30 H 1.08998 * 109.46938 * 209.99917 * 14 13 12 31 31 H 1.09007 * 109.46706 * 329.99755 * 14 13 12 32 32 H 1.08002 * 120.00932 * 0.02562 * 19 18 17 33 33 H 1.07995 * 119.98776 * 180.25303 * 20 19 18 34 34 H 1.07997 * 119.97958 * 179.97438 * 23 21 20 35 35 H 1.07996 * 120.01248 * 179.97438 * 24 23 21 36 36 H 1.07998 * 119.97154 * 179.70575 * 25 13 12 37 37 H 1.08001 * 120.03539 * 180.27205 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1066 11 6 3.4571 -3.4403 0.0856 12 6 4.2022 -4.5979 0.1942 13 6 3.5685 -5.8203 0.3233 14 6 4.3847 -7.0817 0.4410 15 6 4.6717 -7.3606 1.8938 16 8 4.2558 -6.6121 2.7463 17 8 5.3896 -8.4406 2.2410 18 6 5.5178 -8.6955 3.5704 19 6 6.7601 -8.5966 4.1795 20 6 6.8881 -8.8511 5.5312 21 6 5.7789 -9.2150 6.2759 22 9 5.9065 -9.4691 7.5966 23 6 4.5392 -9.3192 5.6680 24 6 4.4075 -9.0607 4.3174 25 6 2.1873 -5.8883 0.3389 26 6 1.4366 -4.7336 0.2368 27 1 -0.4850 0.8400 0.0004 28 1 3.9525 -2.4860 -0.0156 29 1 5.2810 -4.5485 0.1783 30 1 3.8280 -7.9159 0.0140 31 1 5.3242 -6.9581 -0.0977 32 1 7.6261 -8.3166 3.5981 33 1 7.8544 -8.7701 6.0065 34 1 3.6750 -9.6036 6.2499 35 1 3.4406 -9.1424 3.8435 36 1 1.6952 -6.8448 0.4350 37 1 0.3580 -4.7869 0.2534 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110156352.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:27 Heat of formation + Delta-G solvation = -112.703600 kcal Electronic energy + Delta-G solvation = -24220.710628 eV Core-core repulsion = 20229.203130 eV Total energy + Delta-G solvation = -3991.507498 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.00038 -42.40565 -40.81090 -39.68943 -38.43048 -37.57664 -34.43214 -33.10323 -32.33830 -31.80637 -30.84127 -28.45939 -27.15283 -24.65757 -24.23673 -23.66256 -22.64823 -21.59003 -19.86885 -19.34530 -18.88029 -18.72885 -18.20898 -17.94001 -16.70289 -16.66905 -16.46952 -16.21103 -16.05777 -15.65011 -15.52702 -15.19445 -14.89354 -14.71305 -14.58325 -14.41288 -14.14674 -14.01207 -13.62338 -13.29474 -12.99490 -12.96085 -12.70905 -12.51278 -12.36369 -12.30373 -12.15302 -11.88493 -11.61955 -11.19799 -10.79928 -10.27453 -9.78594 -9.67133 -8.96251 -8.48525 -6.16910 -0.23509 0.07699 0.58337 0.60137 1.13047 1.33930 1.44021 1.50383 1.69864 2.16959 2.49190 2.83076 3.13642 3.15227 3.49791 3.62401 3.64865 3.75639 3.91779 4.02447 4.11702 4.17293 4.21308 4.43050 4.55885 4.67082 4.68664 4.77730 4.78762 4.96937 4.97337 5.05711 5.11801 5.12951 5.27456 5.37300 5.53657 5.70041 5.71824 5.74893 6.01379 6.20151 6.79642 6.95986 7.76346 8.74519 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.019200 B = 0.002453 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.001010 B =11412.753276 C =11951.430990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.415 4.415 8 H 0.102 0.898 9 O -0.231 6.231 10 C 0.116 3.884 11 C -0.246 4.246 12 C -0.054 4.054 13 C -0.161 4.161 14 C -0.043 4.043 15 C 0.459 3.541 16 O -0.517 6.517 17 O -0.287 6.287 18 C 0.056 3.944 19 C -0.092 4.092 20 C -0.135 4.135 21 C 0.083 3.917 22 F -0.141 7.141 23 C -0.141 4.141 24 C -0.108 4.108 25 C -0.051 4.051 26 C -0.208 4.208 27 H 0.273 0.727 28 H 0.119 0.881 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.157 0.843 35 H 0.141 0.859 36 H 0.152 0.848 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.456 -20.864 5.604 26.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.491 4.491 8 H 0.119 0.881 9 O -0.138 6.138 10 C 0.065 3.935 11 C -0.265 4.265 12 C -0.072 4.072 13 C -0.162 4.162 14 C -0.080 4.080 15 C 0.304 3.696 16 O -0.403 6.403 17 O -0.203 6.203 18 C 0.014 3.986 19 C -0.110 4.110 20 C -0.154 4.154 21 C 0.064 3.936 22 F -0.120 7.120 23 C -0.160 4.160 24 C -0.127 4.127 25 C -0.069 4.069 26 C -0.227 4.227 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.161 0.839 30 H 0.166 0.834 31 H 0.163 0.837 32 H 0.182 0.818 33 H 0.187 0.813 34 H 0.175 0.825 35 H 0.159 0.841 36 H 0.170 0.830 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.927 -20.455 5.907 26.002 hybrid contribution -0.318 1.094 0.490 1.240 sum 14.610 -19.360 6.396 25.083 Atomic orbital electron populations 1.70174 1.08044 1.28919 1.48740 1.26604 0.96861 1.02773 0.95790 0.84657 0.77425 0.74241 0.79952 1.17857 1.19550 1.18399 1.21793 0.92529 0.81466 1.53346 0.88118 1.83939 1.36024 1.12631 1.81211 1.20001 0.91729 0.88013 0.93709 1.21239 0.93093 1.00129 1.12036 1.20979 0.99952 0.90952 0.95280 1.19173 0.93364 0.94108 1.09528 1.20280 1.03795 0.97076 0.86848 1.24970 0.73645 0.77064 0.93954 1.90771 1.48558 1.47372 1.53564 1.84672 1.67312 1.45116 1.23155 1.18891 0.94893 1.02015 0.82770 1.21216 0.97347 0.98359 0.94089 1.21308 0.99485 1.01058 0.93524 1.17962 0.95301 1.02199 0.78108 1.91503 1.96723 1.91734 1.32049 1.21214 0.97466 1.02408 0.94908 1.21341 0.99040 0.98311 0.93971 1.20920 0.93326 0.97144 0.95510 1.20456 1.00028 0.90657 1.11544 0.91789 0.86365 0.83928 0.83403 0.83668 0.81757 0.81328 0.82487 0.84099 0.83044 0.86875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.15 13.67 21.61 0.30 -56.86 16 2 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 3 Si 1.02 43.24 29.55 68.60 2.03 45.27 16 4 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.42 -24.53 9.49 67.92 0.64 -23.88 16 8 H 0.10 5.45 5.21 -2.91 -0.02 5.43 16 9 O -0.23 -14.15 9.76 -22.74 -0.22 -14.37 16 10 C 0.12 5.85 6.65 22.58 0.15 6.00 16 11 C -0.25 -10.75 9.17 22.39 0.21 -10.55 16 12 C -0.05 -1.80 9.69 22.25 0.22 -1.58 16 13 C -0.16 -4.65 4.38 -19.83 -0.09 -4.74 16 14 C -0.04 -0.77 5.94 29.10 0.17 -0.59 16 15 C 0.46 10.59 7.71 71.23 0.55 11.14 16 16 O -0.52 -16.86 15.35 21.95 0.34 -16.53 16 17 O -0.29 -5.71 10.05 4.29 0.04 -5.67 16 18 C 0.06 1.14 5.34 22.50 0.12 1.26 16 19 C -0.09 -1.51 9.98 22.36 0.22 -1.29 16 20 C -0.14 -2.08 10.02 22.30 0.22 -1.86 16 21 C 0.08 1.53 7.30 22.38 0.16 1.70 16 22 F -0.14 -2.74 17.27 44.97 0.78 -1.97 16 23 C -0.14 -2.58 10.02 22.30 0.22 -2.35 16 24 C -0.11 -2.17 9.18 22.36 0.21 -1.96 16 25 C -0.05 -1.65 9.69 22.25 0.22 -1.43 16 26 C -0.21 -8.87 9.99 22.39 0.22 -8.64 16 27 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16 29 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 30 H 0.15 1.61 8.08 -2.39 -0.02 1.59 16 31 H 0.15 1.66 8.08 -2.38 -0.02 1.64 16 32 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 33 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 34 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 36 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 37 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -78.43 338.74 8.29 -70.14 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 1.12 Total: 19.60 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 3.92 Total: -39.62 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.30 Total: -56.86 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: 0.16 Total: -36.57 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.97 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -78.43 8.29 -70.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110156352.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.563 kcal (2) G-P(sol) polarization free energy of solvation -78.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds