Wall clock time and date at job start Tue Mar 31 2020 11:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38344 * 119.86415 * 2 1 4 4 C 1.37978 * 120.13105 * 180.28620 * 3 2 1 5 5 C 1.39471 * 119.86587 * 0.02562 * 4 3 2 6 6 C 1.48138 * 120.13208 * 180.02562 * 5 4 3 7 7 C 1.38556 * 123.59525 * 130.00957 * 6 5 4 8 8 C 1.33435 * 115.07022 * 180.02562 * 7 6 5 9 9 S 1.70525 * 111.35083 * 359.97438 * 8 7 6 10 10 C 1.37970 * 123.59864 * 309.70834 * 6 5 4 11 11 C 1.41834 * 125.49150 * 0.02562 * 10 6 5 12 12 O 1.21670 * 120.00145 * 359.97438 * 11 10 6 13 13 O 1.34945 * 120.00018 * 179.97438 * 11 10 6 14 14 C 1.42900 * 116.99980 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.47371 * 30.00433 * 14 13 11 16 16 C 1.52997 * 109.47282 * 270.00157 * 14 13 11 17 17 C 1.50703 * 109.47041 * 150.00095 * 14 13 11 18 18 H 1.08007 * 119.99670 * 35.00031 * 17 14 13 19 19 C 1.37876 * 120.00395 * 215.00042 * 17 14 13 20 20 N 1.31510 * 120.00358 * 184.91690 * 19 17 14 21 21 Si 1.86805 * 119.99727 * 4.91136 * 19 17 14 22 22 H 1.48503 * 109.46595 * 84.83487 * 21 19 17 23 23 H 1.48495 * 109.47038 * 204.83424 * 21 19 17 24 24 H 1.48499 * 109.46909 * 324.83817 * 21 19 17 25 25 C 1.39466 * 119.73198 * 359.97438 * 5 4 3 26 26 C 1.37978 * 119.86704 * 359.97438 * 25 5 4 27 27 H 1.09007 * 109.46784 * 269.72589 * 1 2 3 28 28 H 1.09002 * 109.47609 * 29.71726 * 1 2 3 29 29 H 1.09000 * 109.47719 * 149.72370 * 1 2 3 30 30 H 1.07996 * 119.93528 * 0.25957 * 3 2 1 31 31 H 1.08005 * 120.06974 * 180.02562 * 4 3 2 32 32 H 1.07995 * 122.45906 * 359.97365 * 7 6 5 33 33 H 1.08003 * 124.32069 * 179.97438 * 8 7 6 34 34 H 1.09000 * 109.46890 * 295.03229 * 16 14 13 35 35 H 1.08999 * 109.47107 * 55.03554 * 16 14 13 36 36 H 1.09003 * 109.47413 * 175.03796 * 16 14 13 37 37 H 0.96996 * 120.00359 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.06741 * 180.02562 * 25 5 4 39 39 H 1.08001 * 119.93675 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1997 0.0000 4 6 3.5756 1.2062 -0.0060 5 6 4.2758 -0.0001 -0.0125 6 6 5.7571 0.0000 -0.0184 7 6 6.5273 -0.7448 0.8602 8 6 7.8463 -0.6167 0.7043 9 16 8.2198 0.4561 -0.5675 10 6 6.5171 0.7370 -0.9032 11 6 6.0069 1.5870 -1.9174 12 8 4.8049 1.7103 -2.0602 13 8 6.8546 2.2591 -2.7241 14 6 6.2714 3.0968 -3.7242 15 1 5.3118 3.4725 -3.3692 16 6 6.0602 2.2892 -5.0063 17 6 7.1914 4.2566 -4.0069 18 1 8.2619 4.1175 -3.9726 19 6 6.6665 5.4951 -4.3093 20 7 7.4654 6.4825 -4.6505 21 14 4.8203 5.7707 -4.2347 22 1 4.4247 6.0972 -2.8411 23 1 4.4512 6.8958 -5.1306 24 1 4.1178 4.5379 -4.6728 25 6 3.5756 -1.2062 -0.0125 26 6 2.1958 -1.1998 -0.0054 27 1 -0.3633 -0.0049 1.0277 28 1 -0.3634 0.8925 -0.5094 29 1 -0.3634 -0.8875 -0.5181 30 1 1.6526 2.1331 0.0042 31 1 4.1124 2.1434 -0.0055 32 1 6.0920 -1.3814 1.6162 33 1 8.5831 -1.1274 1.3066 34 1 7.0271 1.9881 -5.4095 35 1 5.4673 1.4021 -4.7834 36 1 5.5357 2.9019 -5.7396 37 1 7.0961 7.3539 -4.8629 38 1 4.1123 -2.1434 -0.0172 39 1 1.6525 -2.1332 -0.0050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113694663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:55 Heat of formation + Delta-G solvation = -32.807739 kcal Electronic energy + Delta-G solvation = -23561.307717 eV Core-core repulsion = 20139.477939 eV Total energy + Delta-G solvation = -3421.829777 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.19599 -39.12243 -37.54056 -35.79683 -33.07856 -32.74354 -30.94285 -30.77288 -29.73776 -27.39577 -25.41443 -24.51230 -22.80046 -22.09508 -21.33152 -20.23480 -18.75003 -18.47758 -16.89578 -16.59513 -15.96443 -15.51052 -15.13876 -15.04208 -14.77459 -14.48240 -13.99821 -13.77255 -13.31279 -13.19736 -12.89990 -12.82554 -12.60872 -12.48926 -12.31486 -12.20354 -11.81405 -11.71408 -11.30110 -11.12333 -10.99776 -10.84475 -10.76319 -10.69850 -10.07298 -9.80384 -9.46329 -9.11768 -9.05132 -8.75244 -8.69792 -8.65420 -7.97408 -6.27483 -4.31451 0.33564 1.38071 1.53823 1.61420 1.98995 2.39698 3.20489 3.28612 3.34768 3.40962 3.63998 3.91987 4.26419 4.65804 4.89160 4.92646 5.05579 5.09772 5.13643 5.22530 5.35498 5.51769 5.53962 5.58843 5.74271 5.80678 5.84881 6.08191 6.11172 6.17970 6.19212 6.26361 6.44560 6.53122 6.55435 6.68696 6.70872 6.76905 7.12248 7.15779 7.35796 7.51625 8.21694 8.62431 8.82665 9.32052 10.83898 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.005176 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.529391 B = 5408.103148 C = 7344.206475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.081 4.081 3 C -0.127 4.127 4 C -0.040 4.040 5 C -0.044 4.044 6 C 0.016 3.984 7 C -0.142 4.142 8 C -0.245 4.245 9 S 0.271 5.729 10 C -0.249 4.249 11 C 0.519 3.481 12 O -0.502 6.502 13 O -0.339 6.339 14 C 0.181 3.819 15 H 0.047 0.953 16 C -0.154 4.154 17 C -0.518 4.518 18 H 0.085 0.915 19 C 0.083 3.917 20 N -0.882 5.882 21 Si 0.868 3.132 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.095 4.095 26 C -0.134 4.134 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.144 0.856 33 H 0.170 0.830 34 H 0.056 0.944 35 H 0.029 0.971 36 H 0.060 0.940 37 H 0.270 0.730 38 H 0.120 0.880 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.231 -16.014 12.329 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.081 4.081 3 C -0.146 4.146 4 C -0.058 4.058 5 C -0.046 4.046 6 C 0.000 4.000 7 C -0.173 4.173 8 C -0.383 4.383 9 S 0.542 5.458 10 C -0.368 4.368 11 C 0.364 3.636 12 O -0.395 6.395 13 O -0.255 6.255 14 C 0.128 3.872 15 H 0.064 0.936 16 C -0.212 4.212 17 C -0.555 4.555 18 H 0.103 0.897 19 C -0.121 4.121 20 N -0.519 5.519 21 Si 0.694 3.306 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.184 1.184 25 C -0.114 4.114 26 C -0.152 4.152 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.162 0.838 33 H 0.187 0.813 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.138 0.862 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.105 -15.198 11.539 19.753 hybrid contribution -2.223 -0.223 0.550 2.301 sum -7.328 -15.421 12.088 20.920 Atomic orbital electron populations 1.20790 0.91523 1.02692 1.01997 1.19948 0.95836 0.93243 0.99072 1.20907 0.94015 0.97447 1.02184 1.21125 0.93760 0.97343 0.93611 1.18201 0.89605 0.93757 1.03045 1.18287 0.93314 0.94852 0.93506 1.19870 0.92363 1.03083 1.01979 1.25362 1.00669 1.06495 1.05756 1.83509 1.02687 1.35559 1.23999 1.23054 0.98485 1.09948 1.05332 1.18541 0.85492 0.78744 0.80780 1.90858 1.15723 1.62486 1.70397 1.86361 1.40505 1.55020 1.43653 1.20606 0.95799 0.88243 0.82586 0.93563 1.22270 1.00807 0.98790 0.99314 1.20794 0.95130 0.91627 1.47936 0.89653 1.24892 0.98039 0.95249 0.93921 1.69848 1.35282 1.02413 1.44344 0.86982 0.85947 0.78657 0.79034 1.19597 1.20734 1.18438 1.21049 0.94011 0.96710 0.99634 1.20791 0.93799 0.97283 1.03357 0.91378 0.91575 0.91725 0.86168 0.86012 0.83815 0.81271 0.92453 0.95163 0.92074 0.91998 0.86191 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 36.01 0.36 -0.72 16 2 C -0.08 -1.03 5.89 -104.54 -0.62 -1.64 16 3 C -0.13 -1.86 9.68 -39.64 -0.38 -2.24 16 4 C -0.04 -0.66 7.18 -39.22 -0.28 -0.94 16 5 C -0.04 -0.68 5.01 -104.92 -0.53 -1.21 16 6 C 0.02 0.24 5.44 -105.81 -0.58 -0.33 16 7 C -0.14 -1.67 9.85 -41.14 -0.41 -2.08 16 8 C -0.24 -2.61 10.88 29.05 0.32 -2.29 16 9 S 0.27 3.70 22.82 -107.50 -2.45 1.24 16 10 C -0.25 -4.33 6.28 -38.31 -0.24 -4.57 16 11 C 0.52 11.08 7.55 32.11 0.24 11.32 16 12 O -0.50 -11.41 11.76 -19.40 -0.23 -11.64 16 13 O -0.34 -8.01 9.50 -41.16 -0.39 -8.40 16 14 C 0.18 4.61 2.17 -27.88 -0.06 4.55 16 15 H 0.05 1.23 4.26 -51.93 -0.22 1.01 16 16 C -0.15 -3.52 9.51 37.16 0.35 -3.16 16 17 C -0.52 -14.77 9.23 -34.44 -0.32 -15.09 16 18 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 19 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 20 N -0.88 -26.31 13.96 55.43 0.77 -25.54 16 21 Si 0.87 21.61 26.99 -169.99 -4.59 17.02 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.26 -6.35 6.82 56.52 0.39 -5.96 16 25 C -0.10 -1.26 9.64 -39.22 -0.38 -1.63 16 26 C -0.13 -1.64 9.68 -39.64 -0.38 -2.02 16 27 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 29 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.12 2.18 7.14 -52.48 -0.37 1.80 16 32 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 346.31 15.07 5.22 5.22 Total: -1.00 -31.97 346.31 -9.48 -41.45 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -4.81 Total: 0.41 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -2.99 Total: -19.77 kcal Atomic # 7 Polarization: -26.31 SS G_CDS: 0.77 Total: -25.54 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.62 Total: -20.04 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.59 Total: 17.02 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -2.45 Total: 1.24 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.97 -9.48 -41.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.641 kcal (2) G-P(sol) polarization free energy of solvation -31.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds