Wall clock time and date at job start Tue Mar 31 2020 11:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38344 * 119.86415 * 2 1 4 4 C 1.37978 * 120.13105 * 180.28620 * 3 2 1 5 5 C 1.39471 * 119.86587 * 0.02562 * 4 3 2 6 6 C 1.48138 * 120.13208 * 180.02562 * 5 4 3 7 7 C 1.38556 * 123.59525 * 130.00957 * 6 5 4 8 8 C 1.33435 * 115.07022 * 180.02562 * 7 6 5 9 9 S 1.70525 * 111.35083 * 359.97438 * 8 7 6 10 10 C 1.37970 * 123.59864 * 309.70834 * 6 5 4 11 11 C 1.41834 * 125.49150 * 0.02562 * 10 6 5 12 12 O 1.21670 * 120.00145 * 359.97438 * 11 10 6 13 13 O 1.34945 * 120.00018 * 179.97438 * 11 10 6 14 14 C 1.42900 * 116.99980 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.47371 * 30.00433 * 14 13 11 16 16 C 1.52997 * 109.47282 * 270.00157 * 14 13 11 17 17 C 1.50703 * 109.47041 * 150.00095 * 14 13 11 18 18 H 1.08007 * 119.99670 * 35.00031 * 17 14 13 19 19 C 1.37876 * 120.00395 * 215.00042 * 17 14 13 20 20 N 1.31510 * 120.00358 * 184.91690 * 19 17 14 21 21 Si 1.86805 * 119.99727 * 4.91136 * 19 17 14 22 22 H 1.48503 * 109.46595 * 84.83487 * 21 19 17 23 23 H 1.48495 * 109.47038 * 204.83424 * 21 19 17 24 24 H 1.48499 * 109.46909 * 324.83817 * 21 19 17 25 25 C 1.39466 * 119.73198 * 359.97438 * 5 4 3 26 26 C 1.37978 * 119.86704 * 359.97438 * 25 5 4 27 27 H 1.09007 * 109.46784 * 269.72589 * 1 2 3 28 28 H 1.09002 * 109.47609 * 29.71726 * 1 2 3 29 29 H 1.09000 * 109.47719 * 149.72370 * 1 2 3 30 30 H 1.07996 * 119.93528 * 0.25957 * 3 2 1 31 31 H 1.08005 * 120.06974 * 180.02562 * 4 3 2 32 32 H 1.07995 * 122.45906 * 359.97365 * 7 6 5 33 33 H 1.08003 * 124.32069 * 179.97438 * 8 7 6 34 34 H 1.09000 * 109.46890 * 295.03229 * 16 14 13 35 35 H 1.08999 * 109.47107 * 55.03554 * 16 14 13 36 36 H 1.09003 * 109.47413 * 175.03796 * 16 14 13 37 37 H 0.96996 * 120.00359 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.06741 * 180.02562 * 25 5 4 39 39 H 1.08001 * 119.93675 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1997 0.0000 4 6 3.5756 1.2062 -0.0060 5 6 4.2758 -0.0001 -0.0125 6 6 5.7571 0.0000 -0.0184 7 6 6.5273 -0.7448 0.8602 8 6 7.8463 -0.6167 0.7043 9 16 8.2198 0.4561 -0.5675 10 6 6.5171 0.7370 -0.9032 11 6 6.0069 1.5870 -1.9174 12 8 4.8049 1.7103 -2.0602 13 8 6.8546 2.2591 -2.7241 14 6 6.2714 3.0968 -3.7242 15 1 5.3118 3.4725 -3.3692 16 6 6.0602 2.2892 -5.0063 17 6 7.1914 4.2566 -4.0069 18 1 8.2619 4.1175 -3.9726 19 6 6.6665 5.4951 -4.3093 20 7 7.4654 6.4825 -4.6505 21 14 4.8203 5.7707 -4.2347 22 1 4.4247 6.0972 -2.8411 23 1 4.4512 6.8958 -5.1306 24 1 4.1178 4.5379 -4.6728 25 6 3.5756 -1.2062 -0.0125 26 6 2.1958 -1.1998 -0.0054 27 1 -0.3633 -0.0049 1.0277 28 1 -0.3634 0.8925 -0.5094 29 1 -0.3634 -0.8875 -0.5181 30 1 1.6526 2.1331 0.0042 31 1 4.1124 2.1434 -0.0055 32 1 6.0920 -1.3814 1.6162 33 1 8.5831 -1.1274 1.3066 34 1 7.0271 1.9881 -5.4095 35 1 5.4673 1.4021 -4.7834 36 1 5.5357 2.9019 -5.7396 37 1 7.0961 7.3539 -4.8629 38 1 4.1123 -2.1434 -0.0172 39 1 1.6525 -2.1332 -0.0050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113694663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:54 Heat of formation + Delta-G solvation = -49.475861 kcal Electronic energy + Delta-G solvation = -23562.030501 eV Core-core repulsion = 20139.477939 eV Total energy + Delta-G solvation = -3422.552561 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.67633 -40.39307 -38.65706 -37.48466 -35.19649 -33.70550 -32.77870 -31.88495 -30.99378 -28.42896 -27.50730 -25.62369 -24.12589 -23.30850 -22.33027 -22.00413 -20.22234 -19.77291 -18.88339 -18.15284 -17.21658 -17.04205 -16.69515 -16.10850 -16.06171 -15.74027 -15.32413 -14.87196 -14.71433 -14.54565 -14.40891 -14.25504 -14.09555 -13.81200 -13.53927 -13.43590 -13.10509 -12.99730 -12.95633 -12.75315 -12.64481 -12.24344 -12.01659 -11.87873 -11.82604 -11.53036 -11.37426 -11.15887 -10.90222 -10.12992 -9.81066 -9.73910 -9.03938 -8.49941 -6.59358 -0.83682 0.35839 0.44855 0.55373 0.97515 1.20916 1.24410 1.29633 1.35412 1.95350 2.02120 2.16392 2.86232 2.89022 3.64498 3.92022 4.01666 4.03893 4.12141 4.18966 4.19849 4.31781 4.50400 4.53777 4.55886 4.59165 4.76289 4.82539 4.84486 4.85757 4.97146 5.08164 5.16106 5.21717 5.26189 5.28537 5.35998 5.51459 5.59490 5.68036 5.70172 6.10475 6.12326 6.48414 6.87077 7.09226 8.65513 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.005176 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.529391 B = 5408.103148 C = 7344.206475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.081 4.081 3 C -0.146 4.146 4 C -0.066 4.066 5 C -0.069 4.069 6 C 0.033 3.967 7 C -0.151 4.151 8 C -0.200 4.200 9 S 0.262 5.738 10 C -0.310 4.310 11 C 0.517 3.483 12 O -0.527 6.527 13 O -0.354 6.354 14 C 0.184 3.816 15 H 0.035 0.965 16 C -0.147 4.147 17 C -0.530 4.530 18 H 0.049 0.951 19 C 0.039 3.961 20 N -0.921 5.921 21 Si 0.925 3.075 22 H -0.271 1.271 23 H -0.264 1.264 24 H -0.253 1.253 25 C -0.093 4.093 26 C -0.132 4.132 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.090 0.910 32 H 0.179 0.821 33 H 0.216 0.784 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.064 0.936 37 H 0.276 0.724 38 H 0.147 0.853 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.809 -19.217 14.052 25.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.082 4.082 3 C -0.164 4.164 4 C -0.085 4.085 5 C -0.071 4.071 6 C 0.016 3.984 7 C -0.180 4.180 8 C -0.338 4.338 9 S 0.533 5.467 10 C -0.427 4.427 11 C 0.365 3.635 12 O -0.420 6.420 13 O -0.271 6.271 14 C 0.130 3.870 15 H 0.052 0.948 16 C -0.204 4.204 17 C -0.567 4.567 18 H 0.067 0.933 19 C -0.162 4.162 20 N -0.559 5.559 21 Si 0.748 3.252 22 H -0.196 1.196 23 H -0.188 1.188 24 H -0.177 1.177 25 C -0.111 4.111 26 C -0.150 4.150 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.140 0.860 31 H 0.108 0.892 32 H 0.196 0.804 33 H 0.233 0.767 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.165 0.835 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.673 -18.411 13.264 23.653 hybrid contribution -1.682 0.646 0.164 1.809 sum -8.355 -17.766 13.428 23.785 Atomic orbital electron populations 1.20852 0.89087 1.03503 1.03368 1.20348 0.97667 0.92654 0.97487 1.21077 0.93511 0.98803 1.03029 1.21025 0.94705 0.96811 0.95939 1.18423 0.90049 0.94283 1.04330 1.18670 0.93556 0.93532 0.92647 1.20140 0.92412 1.03325 1.02121 1.25870 1.01210 1.03448 1.03295 1.83515 1.00629 1.36849 1.25710 1.22882 1.00881 1.12357 1.06622 1.19074 0.85121 0.78530 0.80818 1.90829 1.16460 1.63577 1.71177 1.86300 1.41189 1.55491 1.44096 1.20382 0.94233 0.88300 0.84095 0.94752 1.22161 1.01378 0.98919 0.97990 1.20907 0.93988 0.93359 1.48480 0.93269 1.25594 1.02420 0.94837 0.93375 1.69944 1.37366 1.03129 1.45468 0.86075 0.80595 0.79270 0.79254 1.19618 1.18821 1.17721 1.21382 0.94682 0.96685 0.98371 1.21239 0.93679 0.98402 1.01690 0.89610 0.91728 0.89970 0.85964 0.89199 0.80394 0.76715 0.91974 0.93870 0.91726 0.91404 0.83507 0.82826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 10.01 71.24 0.71 -1.10 16 2 C -0.08 -1.91 5.89 -19.81 -0.12 -2.03 16 3 C -0.15 -4.31 9.68 22.23 0.22 -4.09 16 4 C -0.07 -2.26 7.18 22.51 0.16 -2.10 16 5 C -0.07 -2.09 5.01 -20.05 -0.10 -2.19 16 6 C 0.03 0.98 5.44 -20.64 -0.11 0.86 16 7 C -0.15 -3.04 9.85 21.26 0.21 -2.83 16 8 C -0.20 -3.50 10.88 66.73 0.73 -2.78 16 9 S 0.26 6.94 22.82 -56.49 -1.29 5.65 16 10 C -0.31 -10.92 6.28 23.10 0.15 -10.78 16 11 C 0.52 23.05 7.55 68.71 0.52 23.57 16 12 O -0.53 -25.05 11.76 19.28 0.23 -24.82 16 13 O -0.35 -17.53 9.50 -58.61 -0.56 -18.09 16 14 C 0.18 9.70 2.17 29.85 0.06 9.77 16 15 H 0.03 1.89 4.26 -2.39 -0.01 1.88 16 16 C -0.15 -6.79 9.51 71.98 0.68 -6.11 16 17 C -0.53 -31.63 9.23 25.60 0.24 -31.39 16 18 H 0.05 3.21 8.06 -2.91 -0.02 3.18 16 19 C 0.04 2.29 5.47 84.66 0.46 2.75 16 20 N -0.92 -56.56 13.96 21.45 0.30 -56.26 16 21 Si 0.93 45.44 26.99 68.60 1.85 47.29 16 22 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 24 H -0.25 -12.08 6.82 99.48 0.68 -11.40 16 25 C -0.09 -2.20 9.64 22.50 0.22 -1.98 16 26 C -0.13 -2.81 9.68 22.23 0.22 -2.59 16 27 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.06 1.08 8.08 -2.39 -0.02 1.06 16 29 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 30 H 0.12 3.35 8.06 -2.91 -0.02 3.32 16 31 H 0.09 3.53 7.14 -2.91 -0.02 3.51 16 32 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.22 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 37 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 38 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -74.04 346.31 5.81 -68.24 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 1.03 Total: 11.02 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 4.24 Total: -33.02 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.30 Total: -56.26 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -0.33 Total: -42.91 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.85 Total: 47.29 kcal Atomic # 16 Polarization: 6.94 SS G_CDS: -1.29 Total: 5.65 kcal Total: -74.04 5.81 -68.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.760 kcal (2) G-P(sol) polarization free energy of solvation -74.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds