Wall clock time and date at job start Tue Mar 31 2020 11:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46879 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99953 * 2 1 3 5 5 H 1.08000 * 120.00156 * 239.99792 * 4 2 1 6 6 C 1.37878 * 119.99633 * 59.99475 * 4 2 1 7 7 N 1.31509 * 120.00597 * 0.02562 * 6 4 2 8 8 Si 1.86812 * 119.99612 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47063 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46835 * 120.00165 * 8 6 4 11 11 H 1.48503 * 109.46773 * 240.00274 * 8 6 4 12 12 N 1.46500 * 109.47437 * 119.99491 * 2 1 3 13 13 C 1.34774 * 120.00332 * 275.00661 * 12 2 1 14 14 O 1.21363 * 119.99927 * 359.97438 * 13 12 2 15 15 C 1.49341 * 120.00182 * 179.97438 * 13 12 2 16 16 O 1.21383 * 119.99930 * 359.97438 * 15 13 12 17 17 N 1.34774 * 120.00146 * 179.97438 * 15 13 12 18 18 C 1.39801 * 119.99849 * 184.35432 * 17 15 13 19 19 C 1.38901 * 120.03379 * 324.65931 * 18 17 15 20 20 C 1.38313 * 119.96835 * 179.74070 * 19 18 17 21 21 F 1.35101 * 119.98317 * 180.25297 * 20 19 18 22 22 C 1.38640 * 120.03281 * 0.51389 * 20 19 18 23 23 F 1.35093 * 119.97271 * 179.74217 * 22 20 19 24 24 C 1.38650 * 120.06041 * 359.76335 * 22 20 19 25 25 F 1.35094 * 119.98158 * 179.97438 * 24 22 20 26 26 C 1.38312 * 120.02869 * 359.97438 * 24 22 20 27 27 H 1.09002 * 109.47577 * 300.00061 * 1 2 3 28 28 H 1.08999 * 109.47216 * 60.00279 * 1 2 3 29 29 H 1.09006 * 109.46753 * 180.02562 * 1 2 3 30 30 H 0.96997 * 120.00744 * 179.97438 * 7 6 4 31 31 H 0.97000 * 119.99505 * 95.00191 * 12 2 1 32 32 H 0.96998 * 120.00317 * 4.63822 * 17 15 13 33 33 H 1.08001 * 120.00863 * 0.02562 * 19 18 17 34 34 H 1.07996 * 120.01449 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1465 -2.2869 -3.6037 10 1 1.1661 -1.5868 -4.8160 11 1 3.1466 -0.1873 -4.8165 12 7 2.0184 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8587 1.1595 2.4115 15 6 2.6444 -0.7222 3.5767 16 8 2.9323 -1.9001 3.5224 17 7 2.7735 -0.0497 4.7375 18 6 3.3243 -0.6838 5.8551 19 6 3.0786 -2.0321 6.0808 20 6 3.6286 -2.6594 7.1840 21 9 3.3941 -3.9721 7.4010 22 6 4.4161 -1.9405 8.0701 23 9 4.9484 -2.5532 9.1501 24 6 4.6574 -0.5932 7.8492 25 9 5.4245 0.1059 8.7140 26 6 4.1131 0.0353 6.7439 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.7093 1.1617 -3.4844 31 1 2.2491 -1.6316 1.1526 32 1 2.4805 0.8729 4.7987 33 1 2.4622 -2.5915 5.3926 34 1 4.3009 1.0849 6.5722 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123029252.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:26 Heat of formation + Delta-G solvation = -171.361965 kcal Electronic energy + Delta-G solvation = -25203.852276 eV Core-core repulsion = 20687.864382 eV Total energy + Delta-G solvation = -4515.987894 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.082 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.04623 -49.50458 -48.72749 -41.14608 -39.24289 -37.99368 -35.53395 -34.71052 -32.53856 -31.01105 -29.99534 -29.21868 -25.50623 -25.22974 -23.93267 -22.91289 -21.14147 -19.95343 -19.28758 -18.65135 -18.15604 -17.93408 -17.08758 -16.68839 -16.44933 -16.21692 -15.78562 -15.68890 -15.62082 -15.32546 -15.18640 -15.04640 -14.63383 -14.38347 -13.84118 -13.46747 -13.37153 -13.06671 -12.59632 -12.52567 -12.12561 -11.91146 -11.46925 -11.21600 -11.09242 -10.90939 -10.60992 -10.43959 -10.35367 -9.45197 -9.29718 -9.21741 -8.73574 -8.71922 -8.27476 -6.25622 -4.35689 0.20141 0.34837 1.50850 2.18073 2.71696 3.04058 3.17935 3.26422 3.29636 3.43339 3.69090 3.77994 3.87997 4.05935 4.25162 4.43982 4.57903 4.89054 5.05296 5.07900 5.25721 5.33284 5.55725 5.78313 6.24678 6.60292 6.68963 6.74305 6.91146 7.05515 7.22510 7.49519 7.56511 7.70713 7.95356 8.26995 8.46111 8.73375 9.31989 10.80418 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.027001 B = 0.002577 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.747033 B =10862.986639 C =11281.295903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.261 3.739 3 H 0.056 0.944 4 C -0.539 4.539 5 H 0.066 0.934 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.905 3.095 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.664 5.664 13 C 0.496 3.504 14 O -0.531 6.531 15 C 0.511 3.489 16 O -0.497 6.497 17 N -0.649 5.649 18 C 0.203 3.797 19 C -0.143 4.143 20 C 0.123 3.877 21 F -0.114 7.114 22 C 0.013 3.987 23 F -0.119 7.119 24 C 0.121 3.879 25 F -0.116 7.116 26 C -0.162 4.162 27 H 0.017 0.983 28 H 0.095 0.905 29 H 0.031 0.969 30 H 0.266 0.734 31 H 0.403 0.597 32 H 0.431 0.569 33 H 0.171 0.829 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.145 -2.477 18.786 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.161 3.839 3 H 0.073 0.927 4 C -0.577 4.577 5 H 0.084 0.916 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.313 5.313 13 C 0.274 3.726 14 O -0.410 6.410 15 C 0.295 3.705 16 O -0.369 6.369 17 N -0.297 5.297 18 C 0.107 3.893 19 C -0.164 4.164 20 C 0.102 3.898 21 F -0.093 7.093 22 C -0.009 4.009 23 F -0.097 7.097 24 C 0.100 3.900 25 F -0.094 7.094 26 C -0.183 4.183 27 H 0.036 0.964 28 H 0.114 0.886 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.238 0.762 32 H 0.271 0.729 33 H 0.188 0.812 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.066 -2.390 18.560 19.149 hybrid contribution 0.513 -0.661 -0.374 0.916 sum 4.579 -3.050 18.185 18.999 Atomic orbital electron populations 1.22110 0.97676 0.99664 1.01323 1.19031 0.91528 0.94171 0.79189 0.92659 1.21218 1.32926 1.13585 0.89956 0.91624 1.24875 0.94613 0.94902 0.99142 1.69887 1.35633 1.22330 1.24110 0.86334 0.78680 0.79575 0.82217 1.19576 1.20748 1.20775 1.46548 1.60871 1.14612 1.09234 1.19483 0.81485 0.87305 0.84328 1.90756 1.50709 1.15026 1.84490 1.21186 0.77593 0.87125 0.84630 1.90756 1.46161 1.15198 1.84790 1.43252 1.60476 1.17931 1.08030 1.17038 0.93414 0.91435 0.87423 1.21297 1.02853 0.94981 0.97243 1.17032 0.98636 0.79185 0.94996 1.91586 1.92570 1.30781 1.94323 1.17524 1.03629 0.90650 0.89074 1.91552 1.84360 1.82486 1.51320 1.16851 0.95217 0.87575 0.90346 1.91580 1.72290 1.77949 1.67600 1.20841 0.99926 1.02760 0.94780 0.96413 0.88619 0.95008 0.92409 0.76204 0.72924 0.81160 0.82126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.26 37.16 0.34 -3.08 16 2 C 0.26 6.17 2.56 -69.08 -0.18 5.99 16 3 H 0.06 1.48 7.58 -51.92 -0.39 1.08 16 4 C -0.54 -13.57 8.73 -34.44 -0.30 -13.87 16 5 H 0.07 1.60 7.74 -52.49 -0.41 1.20 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -23.57 11.32 55.43 0.63 -22.95 16 8 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 9 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.66 -12.97 5.06 -55.40 -0.28 -13.25 16 13 C 0.50 8.77 7.85 -11.64 -0.09 8.68 16 14 O -0.53 -10.47 16.14 5.49 0.09 -10.38 16 15 C 0.51 7.26 7.73 -11.64 -0.09 7.17 16 16 O -0.50 -7.65 13.93 5.47 0.08 -7.57 16 17 N -0.65 -6.95 5.32 -10.29 -0.05 -7.01 16 18 C 0.20 2.01 6.29 -83.73 -0.53 1.48 16 19 C -0.14 -1.53 8.67 -39.31 -0.34 -1.87 16 20 C 0.12 1.32 7.30 -39.41 -0.29 1.03 16 21 F -0.11 -1.32 17.18 2.25 0.04 -1.29 16 22 C 0.01 0.14 7.31 -39.28 -0.29 -0.15 16 23 F -0.12 -1.37 17.09 2.25 0.04 -1.33 16 24 C 0.12 1.14 7.30 -39.40 -0.29 0.85 16 25 F -0.12 -1.14 17.18 2.25 0.04 -1.10 16 26 C -0.16 -1.32 9.94 -39.31 -0.39 -1.71 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 31 H 0.40 7.29 8.01 -40.82 -0.33 6.96 16 32 H 0.43 3.84 8.30 -40.82 -0.34 3.50 16 33 H 0.17 1.97 6.24 -52.49 -0.33 1.65 16 34 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 318.91 15.07 4.81 4.81 Total: -1.00 -27.80 318.91 -4.68 -32.48 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -2.51 Total: 6.53 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -2.53 Total: 6.18 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.29 Total: -43.20 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.16 Total: -17.95 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.12 Total: -3.71 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.80 -4.68 -32.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123029252.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.881 kcal (2) G-P(sol) polarization free energy of solvation -27.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds