Wall clock time and date at job start Tue Mar 31 2020 11:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46879 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99953 * 2 1 3 5 5 H 1.08000 * 120.00156 * 239.99792 * 4 2 1 6 6 C 1.37878 * 119.99633 * 59.99475 * 4 2 1 7 7 N 1.31509 * 120.00597 * 0.02562 * 6 4 2 8 8 Si 1.86812 * 119.99612 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47063 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46835 * 120.00165 * 8 6 4 11 11 H 1.48503 * 109.46773 * 240.00274 * 8 6 4 12 12 N 1.46500 * 109.47437 * 119.99491 * 2 1 3 13 13 C 1.34774 * 120.00332 * 275.00661 * 12 2 1 14 14 O 1.21363 * 119.99927 * 359.97438 * 13 12 2 15 15 C 1.49341 * 120.00182 * 179.97438 * 13 12 2 16 16 O 1.21383 * 119.99930 * 359.97438 * 15 13 12 17 17 N 1.34774 * 120.00146 * 179.97438 * 15 13 12 18 18 C 1.39801 * 119.99849 * 184.35432 * 17 15 13 19 19 C 1.38901 * 120.03379 * 324.65931 * 18 17 15 20 20 C 1.38313 * 119.96835 * 179.74070 * 19 18 17 21 21 F 1.35101 * 119.98317 * 180.25297 * 20 19 18 22 22 C 1.38640 * 120.03281 * 0.51389 * 20 19 18 23 23 F 1.35093 * 119.97271 * 179.74217 * 22 20 19 24 24 C 1.38650 * 120.06041 * 359.76335 * 22 20 19 25 25 F 1.35094 * 119.98158 * 179.97438 * 24 22 20 26 26 C 1.38312 * 120.02869 * 359.97438 * 24 22 20 27 27 H 1.09002 * 109.47577 * 300.00061 * 1 2 3 28 28 H 1.08999 * 109.47216 * 60.00279 * 1 2 3 29 29 H 1.09006 * 109.46753 * 180.02562 * 1 2 3 30 30 H 0.96997 * 120.00744 * 179.97438 * 7 6 4 31 31 H 0.97000 * 119.99505 * 95.00191 * 12 2 1 32 32 H 0.96998 * 120.00317 * 4.63822 * 17 15 13 33 33 H 1.08001 * 120.00863 * 0.02562 * 19 18 17 34 34 H 1.07996 * 120.01449 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1465 -2.2869 -3.6037 10 1 1.1661 -1.5868 -4.8160 11 1 3.1466 -0.1873 -4.8165 12 7 2.0184 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8587 1.1595 2.4115 15 6 2.6444 -0.7222 3.5767 16 8 2.9323 -1.9001 3.5224 17 7 2.7735 -0.0497 4.7375 18 6 3.3243 -0.6838 5.8551 19 6 3.0786 -2.0321 6.0808 20 6 3.6286 -2.6594 7.1840 21 9 3.3941 -3.9721 7.4010 22 6 4.4161 -1.9405 8.0701 23 9 4.9484 -2.5532 9.1501 24 6 4.6574 -0.5932 7.8492 25 9 5.4245 0.1059 8.7140 26 6 4.1131 0.0353 6.7439 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.7093 1.1617 -3.4844 31 1 2.2491 -1.6316 1.1526 32 1 2.4805 0.8729 4.7987 33 1 2.4622 -2.5915 5.3926 34 1 4.3009 1.0849 6.5722 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123029252.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:25 Heat of formation + Delta-G solvation = -189.244604 kcal Electronic energy + Delta-G solvation = -25204.627726 eV Core-core repulsion = 20687.864382 eV Total energy + Delta-G solvation = -4516.763344 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.88618 -50.32151 -49.57627 -42.25672 -40.46009 -39.16612 -37.05300 -35.93103 -34.33598 -31.80736 -31.20784 -30.68241 -27.37035 -26.53060 -24.76066 -24.00332 -22.56361 -21.39627 -20.48515 -19.69005 -19.02012 -18.89597 -18.14244 -17.89994 -17.76932 -17.21857 -17.08285 -16.85799 -16.60335 -16.58758 -16.10379 -16.05182 -15.85779 -15.49751 -15.22374 -14.95023 -14.43199 -14.27409 -13.93636 -13.75543 -13.39406 -13.06946 -12.99436 -12.90253 -12.79758 -12.59422 -12.29060 -12.12095 -11.53652 -11.13408 -10.77871 -10.62002 -10.15113 -9.98386 -9.59132 -8.19986 -6.36712 -0.66083 -0.42679 0.29612 1.06913 1.45159 1.48038 1.58866 1.84909 2.14651 2.19900 2.39104 2.60221 2.97365 3.00977 3.11524 3.26379 3.42317 3.67776 3.77052 4.28184 4.45970 4.54448 4.72007 4.76783 4.85885 4.90692 5.03337 5.31458 5.39434 5.44462 5.59756 5.73189 5.86503 6.05469 6.40377 6.65029 6.71726 7.06092 7.35779 8.86125 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.027001 B = 0.002577 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.747033 B =10862.986639 C =11281.295903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.269 3.731 3 H 0.018 0.982 4 C -0.552 4.552 5 H 0.071 0.929 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.969 3.031 9 H -0.264 1.264 10 H -0.279 1.279 11 H -0.282 1.282 12 N -0.669 5.669 13 C 0.498 3.502 14 O -0.552 6.552 15 C 0.525 3.475 16 O -0.508 6.508 17 N -0.630 5.630 18 C 0.196 3.804 19 C -0.142 4.142 20 C 0.115 3.885 21 F -0.123 7.123 22 C 0.011 3.989 23 F -0.126 7.126 24 C 0.123 3.877 25 F -0.116 7.116 26 C -0.134 4.134 27 H 0.023 0.977 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.267 0.733 31 H 0.411 0.589 32 H 0.442 0.558 33 H 0.162 0.838 34 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.943 -2.639 19.569 20.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.166 3.834 3 H 0.036 0.964 4 C -0.590 4.590 5 H 0.089 0.911 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.794 3.206 9 H -0.188 1.188 10 H -0.204 1.204 11 H -0.208 1.208 12 N -0.319 5.319 13 C 0.277 3.723 14 O -0.431 6.431 15 C 0.308 3.692 16 O -0.382 6.382 17 N -0.278 5.278 18 C 0.100 3.900 19 C -0.164 4.164 20 C 0.094 3.906 21 F -0.101 7.101 22 C -0.011 4.011 23 F -0.105 7.105 24 C 0.102 3.898 25 F -0.094 7.094 26 C -0.154 4.154 27 H 0.042 0.958 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.247 0.753 32 H 0.284 0.716 33 H 0.179 0.821 34 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 4.875 -2.550 19.398 20.164 hybrid contribution 0.285 -0.561 -0.501 0.804 sum 5.160 -3.111 18.897 19.835 Atomic orbital electron populations 1.21939 0.97397 0.99868 1.00442 1.18619 0.91699 0.92461 0.80584 0.96403 1.21536 1.32923 1.13755 0.90771 0.91110 1.25681 0.94765 0.95526 1.01992 1.70008 1.36636 1.23593 1.24757 0.85344 0.78128 0.78543 0.78625 1.18794 1.20426 1.20810 1.46268 1.61675 1.14909 1.09031 1.19954 0.80398 0.87016 0.84894 1.90743 1.51217 1.16096 1.85066 1.20263 0.77927 0.86644 0.84394 1.90774 1.47040 1.15451 1.84920 1.42974 1.59593 1.18141 1.07091 1.17011 0.94305 0.91230 0.87452 1.21232 1.02698 0.95395 0.97031 1.17010 0.99281 0.78960 0.95332 1.91564 1.92730 1.31387 1.94412 1.17676 1.03500 0.91173 0.88747 1.91533 1.84476 1.82762 1.51711 1.16832 0.95275 0.87054 0.90608 1.91589 1.72314 1.77824 1.67679 1.21018 0.97586 1.03861 0.92970 0.95762 0.90947 0.94132 0.92342 0.75294 0.71641 0.82058 0.78992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.38 9.26 71.98 0.67 -5.72 16 2 C 0.27 12.83 2.56 44.24 0.11 12.95 16 3 H 0.02 0.99 7.58 -2.38 -0.02 0.97 16 4 C -0.55 -27.82 8.73 25.60 0.22 -27.60 16 5 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 6 C 0.02 1.09 5.30 84.66 0.45 1.54 16 7 N -0.91 -49.33 11.32 21.45 0.24 -49.09 16 8 Si 0.97 40.51 29.54 68.60 2.03 42.54 16 9 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 10 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 12 N -0.67 -25.99 5.06 -447.54 -2.27 -28.25 16 13 C 0.50 17.25 7.85 87.24 0.68 17.93 16 14 O -0.55 -21.49 16.14 -3.29 -0.05 -21.54 16 15 C 0.53 14.10 7.73 87.24 0.67 14.77 16 16 O -0.51 -14.93 13.93 -3.35 -0.05 -14.97 16 17 N -0.63 -11.99 5.32 -304.83 -1.62 -13.62 16 18 C 0.20 3.36 6.29 38.19 0.24 3.60 16 19 C -0.14 -2.84 8.67 22.45 0.19 -2.64 16 20 C 0.12 2.34 7.30 22.38 0.16 2.50 16 21 F -0.12 -2.78 17.18 44.97 0.77 -2.00 16 22 C 0.01 0.21 7.31 22.46 0.16 0.37 16 23 F -0.13 -2.77 17.09 44.97 0.77 -2.00 16 24 C 0.12 1.99 7.30 22.39 0.16 2.15 16 25 F -0.12 -1.97 17.18 44.97 0.77 -1.20 16 26 C -0.13 -1.72 9.94 22.45 0.22 -1.50 16 27 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 29 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 31 H 0.41 14.63 8.01 -92.71 -0.74 13.89 16 32 H 0.44 6.68 8.30 -92.71 -0.77 5.91 16 33 H 0.16 3.58 6.24 -2.91 -0.02 3.56 16 34 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -59.38 318.91 4.26 -55.12 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -0.30 Total: 16.65 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 3.96 Total: 18.37 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -3.64 Total: -90.95 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -0.10 Total: -36.52 kcal Atomic # 9 Polarization: -7.52 SS G_CDS: 2.31 Total: -5.20 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -59.38 4.26 -55.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123029252.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.126 kcal (2) G-P(sol) polarization free energy of solvation -59.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds