Wall clock time and date at job start Tue Mar 31 2020 11:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36876 * 119.99625 * 2 1 4 4 H 1.08009 * 119.99926 * 154.16132 * 3 2 1 5 5 C 1.39045 * 120.00432 * 334.16066 * 3 2 1 6 6 N 1.31365 * 119.99845 * 349.32518 * 5 3 2 7 7 Si 1.86798 * 120.00017 * 169.31944 * 5 3 2 8 8 H 1.48497 * 109.47535 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.47180 * 120.00668 * 7 5 3 10 10 H 1.48501 * 109.47186 * 240.00294 * 7 5 3 11 11 C 1.34773 * 120.00383 * 180.02562 * 2 1 3 12 12 O 1.21590 * 120.00078 * 186.15026 * 11 2 1 13 13 C 1.47735 * 119.99731 * 6.14865 * 11 2 1 14 14 C 1.39700 * 120.51066 * 212.85694 * 13 11 2 15 15 N 1.31677 * 120.82276 * 180.02562 * 14 13 11 16 16 C 1.31820 * 122.02362 * 359.97438 * 15 14 13 17 17 C 1.39423 * 120.92907 * 0.03091 * 16 15 14 18 18 C 1.48405 * 120.46418 * 179.97438 * 17 16 15 19 19 C 1.39331 * 120.10201 * 179.72238 * 18 17 16 20 20 C 1.37999 * 119.88924 * 179.76656 * 19 18 17 21 21 C 1.38436 * 120.10495 * 0.51076 * 20 19 18 22 22 Cl 1.73606 * 119.89178 * 179.76433 * 21 20 19 23 23 C 1.38438 * 120.21622 * 359.74710 * 21 20 19 24 24 C 1.37995 * 120.10834 * 359.97438 * 23 21 20 25 25 C 1.39495 * 119.06600 * 0.24674 * 17 16 15 26 26 H 1.09005 * 109.46924 * 204.50246 * 1 2 3 27 27 H 1.08999 * 109.47529 * 324.49408 * 1 2 3 28 28 H 1.09001 * 109.47770 * 84.50121 * 1 2 3 29 29 H 0.96996 * 119.99765 * 179.97438 * 6 5 3 30 30 H 1.08002 * 119.58848 * 0.04721 * 14 13 11 31 31 H 1.07999 * 119.53657 * 180.02562 * 16 15 14 32 32 H 1.08004 * 120.05906 * 0.02562 * 19 18 17 33 33 H 1.07998 * 119.94508 * 180.23070 * 20 19 18 34 34 H 1.07997 * 119.94764 * 179.97438 * 23 21 20 35 35 H 1.07999 * 120.05452 * 180.02562 * 24 23 21 36 36 H 1.08001 * 120.90779 * 179.72708 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1484 1.2322 0.4077 5 6 1.5583 2.3294 -0.5248 6 7 0.4389 2.2369 -1.2060 7 14 2.3561 3.9977 -0.2610 8 1 3.6001 3.8317 0.5327 9 1 2.6858 4.6024 -1.5767 10 1 1.4167 4.8856 0.4702 11 6 2.1389 -1.1671 -0.0005 12 8 3.3496 -1.1701 0.1123 13 6 1.4066 -2.4428 -0.1381 14 6 1.8676 -3.5975 0.4989 15 7 1.2200 -4.7379 0.3801 16 6 0.1187 -4.8449 -0.3363 17 6 -0.4110 -3.7423 -1.0054 18 6 -1.6512 -3.8747 -1.8096 19 6 -2.1771 -2.7665 -2.4705 20 6 -3.3280 -2.8956 -3.2209 21 6 -3.9657 -4.1212 -3.3091 22 17 -5.4166 -4.2760 -4.2497 23 6 -3.4499 -5.2239 -2.6498 24 6 -2.2964 -5.1062 -1.9016 25 6 0.2445 -2.5145 -0.9131 26 1 -0.3633 -0.9352 0.4262 27 1 -0.3634 0.8365 0.5968 28 1 -0.3635 0.0985 -1.0229 29 1 0.0265 3.0350 -1.5718 30 1 2.7661 -3.5542 1.0967 31 1 -0.3804 -5.8001 -0.4060 32 1 -1.6826 -1.8090 -2.3990 33 1 -3.7343 -2.0381 -3.7366 34 1 -3.9511 -6.1779 -2.7212 35 1 -1.8946 -5.9671 -1.3880 36 1 -0.1371 -1.6421 -1.4228 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135206536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:14 Heat of formation + Delta-G solvation = 33.150956 kcal Electronic energy + Delta-G solvation = -22851.018839 eV Core-core repulsion = 19326.465195 eV Total energy + Delta-G solvation = -3524.553644 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.50014 -39.16155 -38.03089 -36.65167 -34.92113 -33.30590 -32.40552 -31.47852 -30.97396 -28.97626 -26.59654 -25.43159 -24.02087 -23.83290 -22.22672 -21.58546 -19.52265 -17.76917 -17.10374 -16.75620 -16.44052 -16.08717 -15.55419 -14.92933 -14.78754 -14.30407 -14.11702 -14.05515 -13.89736 -13.68896 -13.36495 -12.97827 -12.86076 -12.18801 -11.98623 -11.84458 -11.78907 -11.54148 -11.45003 -11.33376 -11.04026 -10.94009 -10.54470 -10.41850 -9.93842 -9.49733 -9.26231 -9.21366 -9.12121 -8.57609 -8.13690 -7.84079 -6.50682 -4.06332 0.41948 1.10881 1.20443 1.71143 1.93297 3.06144 3.17107 3.23783 3.38232 3.74290 3.98516 4.23364 4.33801 4.51489 4.60969 4.66363 4.74898 4.94787 4.99162 5.06858 5.10199 5.21953 5.42179 5.45385 5.68902 5.73919 5.82910 5.98105 6.05087 6.06879 6.11518 6.38375 6.45406 6.56804 6.63650 6.80523 6.96858 7.39769 7.93619 8.10198 8.29747 8.99210 9.19388 9.76855 10.52348 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.013756 B = 0.003690 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.048879 B = 7585.731612 C = 9500.954060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.428 5.428 3 C -0.306 4.306 4 H 0.103 0.897 5 C 0.034 3.966 6 N -0.876 5.876 7 Si 0.930 3.070 8 H -0.266 1.266 9 H -0.279 1.279 10 H -0.279 1.279 11 C 0.479 3.521 12 O -0.581 6.581 13 C -0.141 4.141 14 C 0.141 3.859 15 N -0.487 5.487 16 C 0.109 3.891 17 C -0.116 4.116 18 C -0.024 4.024 19 C -0.097 4.097 20 C -0.103 4.103 21 C -0.039 4.039 22 Cl -0.076 7.076 23 C -0.108 4.108 24 C -0.102 4.102 25 C -0.045 4.045 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.271 0.729 30 H 0.164 0.836 31 H 0.155 0.845 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.664 -11.499 -3.220 16.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.145 5.145 3 C -0.434 4.434 4 H 0.121 0.879 5 C -0.170 4.170 6 N -0.514 5.514 7 Si 0.756 3.244 8 H -0.190 1.190 9 H -0.205 1.205 10 H -0.205 1.205 11 C 0.268 3.732 12 O -0.467 6.467 13 C -0.146 4.146 14 C -0.017 4.017 15 N -0.195 5.195 16 C -0.049 4.049 17 C -0.118 4.118 18 C -0.025 4.025 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.065 4.065 22 Cl -0.047 7.047 23 C -0.126 4.126 24 C -0.120 4.120 25 C -0.071 4.071 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.181 0.819 31 H 0.172 0.828 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.013 -12.055 -2.904 16.585 hybrid contribution -0.411 1.665 -0.585 1.812 sum -11.424 -10.390 -3.489 15.832 Atomic orbital electron populations 1.21881 0.81343 0.98818 1.02145 1.43465 1.05504 1.04749 1.60771 1.19765 1.01438 0.84329 1.37821 0.87909 1.25433 0.96430 1.00401 0.94765 1.69918 1.18804 1.30199 1.32528 0.85794 0.79363 0.80843 0.78377 1.18991 1.20512 1.20476 1.17751 0.87079 0.82816 0.85592 1.90631 1.13446 1.86580 1.56039 1.21344 0.96137 0.97515 0.99653 1.22996 0.97654 0.86381 0.94654 1.67671 1.07748 1.26867 1.17176 1.22866 0.92061 0.97630 0.92341 1.19602 0.96261 0.94991 1.00963 1.18740 0.93626 0.93685 0.96420 1.21344 0.95245 0.99118 0.95787 1.21025 0.95454 0.96298 0.99350 1.20999 0.90801 0.95752 0.98979 1.98367 1.36503 1.98160 1.71687 1.20939 0.96462 0.97885 0.97330 1.21147 0.94831 0.97189 0.98876 1.22339 0.92583 0.97403 0.94759 0.94755 0.91663 0.91355 0.91918 0.81861 0.82819 0.84222 0.84552 0.84800 0.84661 0.83097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.13 7.08 59.85 0.42 2.55 16 2 N -0.43 -10.55 3.00 -123.31 -0.37 -10.92 16 3 C -0.31 -8.16 9.25 -15.00 -0.14 -8.30 16 4 H 0.10 2.88 7.42 -52.48 -0.39 2.49 16 5 C 0.03 0.86 5.15 -17.45 -0.09 0.77 16 6 N -0.88 -21.83 10.75 55.50 0.60 -21.23 16 7 Si 0.93 19.80 29.57 -169.99 -5.03 14.77 16 8 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 9 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 10 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 11 C 0.48 11.56 7.35 -12.38 -0.09 11.47 16 12 O -0.58 -15.91 16.50 5.29 0.09 -15.82 16 13 C -0.14 -2.74 5.22 -104.86 -0.55 -3.29 16 14 C 0.14 2.51 10.77 -17.07 -0.18 2.33 16 15 N -0.49 -7.84 10.33 -12.62 -0.13 -7.97 16 16 C 0.11 1.49 10.59 -17.12 -0.18 1.31 16 17 C -0.12 -1.64 5.89 -104.80 -0.62 -2.26 16 18 C -0.02 -0.29 5.88 -104.90 -0.62 -0.90 16 19 C -0.10 -1.16 9.44 -39.26 -0.37 -1.53 16 20 C -0.10 -1.12 9.81 -39.60 -0.39 -1.51 16 21 C -0.04 -0.40 6.32 -39.43 -0.25 -0.65 16 22 Cl -0.08 -0.74 28.95 -51.86 -1.50 -2.24 16 23 C -0.11 -1.02 9.81 -39.60 -0.39 -1.41 16 24 C -0.10 -1.02 9.44 -39.26 -0.37 -1.39 16 25 C -0.04 -0.75 7.05 -38.51 -0.27 -1.02 16 26 H 0.03 0.62 5.65 -51.93 -0.29 0.33 16 27 H 0.06 1.43 7.49 -51.93 -0.39 1.04 16 28 H 0.07 1.43 6.19 -51.93 -0.32 1.11 16 29 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 30 H 0.16 2.83 7.97 -52.49 -0.42 2.41 16 31 H 0.15 1.55 6.21 -52.49 -0.33 1.23 16 32 H 0.14 1.69 6.27 -52.48 -0.33 1.36 16 33 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.14 1.03 6.22 -52.49 -0.33 0.70 16 36 H 0.15 2.52 3.71 -52.49 -0.19 2.33 16 LS Contribution 321.03 15.07 4.84 4.84 Total: -1.00 -29.62 321.03 -8.56 -38.18 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -2.97 Total: 4.24 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -4.08 Total: -3.84 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.10 Total: -40.13 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.09 Total: -15.82 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.62 -8.56 -38.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135206536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.328 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds