Wall clock time and date at job start Tue Mar 31 2020 11:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36876 * 119.99625 * 2 1 4 4 H 1.08009 * 119.99926 * 154.16132 * 3 2 1 5 5 C 1.39045 * 120.00432 * 334.16066 * 3 2 1 6 6 N 1.31365 * 119.99845 * 349.32518 * 5 3 2 7 7 Si 1.86798 * 120.00017 * 169.31944 * 5 3 2 8 8 H 1.48497 * 109.47535 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.47180 * 120.00668 * 7 5 3 10 10 H 1.48501 * 109.47186 * 240.00294 * 7 5 3 11 11 C 1.34773 * 120.00383 * 180.02562 * 2 1 3 12 12 O 1.21590 * 120.00078 * 186.15026 * 11 2 1 13 13 C 1.47735 * 119.99731 * 6.14865 * 11 2 1 14 14 C 1.39700 * 120.51066 * 212.85694 * 13 11 2 15 15 N 1.31677 * 120.82276 * 180.02562 * 14 13 11 16 16 C 1.31820 * 122.02362 * 359.97438 * 15 14 13 17 17 C 1.39423 * 120.92907 * 0.03091 * 16 15 14 18 18 C 1.48405 * 120.46418 * 179.97438 * 17 16 15 19 19 C 1.39331 * 120.10201 * 179.72238 * 18 17 16 20 20 C 1.37999 * 119.88924 * 179.76656 * 19 18 17 21 21 C 1.38436 * 120.10495 * 0.51076 * 20 19 18 22 22 Cl 1.73606 * 119.89178 * 179.76433 * 21 20 19 23 23 C 1.38438 * 120.21622 * 359.74710 * 21 20 19 24 24 C 1.37995 * 120.10834 * 359.97438 * 23 21 20 25 25 C 1.39495 * 119.06600 * 0.24674 * 17 16 15 26 26 H 1.09005 * 109.46924 * 204.50246 * 1 2 3 27 27 H 1.08999 * 109.47529 * 324.49408 * 1 2 3 28 28 H 1.09001 * 109.47770 * 84.50121 * 1 2 3 29 29 H 0.96996 * 119.99765 * 179.97438 * 6 5 3 30 30 H 1.08002 * 119.58848 * 0.04721 * 14 13 11 31 31 H 1.07999 * 119.53657 * 180.02562 * 16 15 14 32 32 H 1.08004 * 120.05906 * 0.02562 * 19 18 17 33 33 H 1.07998 * 119.94508 * 180.23070 * 20 19 18 34 34 H 1.07997 * 119.94764 * 179.97438 * 23 21 20 35 35 H 1.07999 * 120.05452 * 180.02562 * 24 23 21 36 36 H 1.08001 * 120.90779 * 179.72708 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1484 1.2322 0.4077 5 6 1.5583 2.3294 -0.5248 6 7 0.4389 2.2369 -1.2060 7 14 2.3561 3.9977 -0.2610 8 1 3.6001 3.8317 0.5327 9 1 2.6858 4.6024 -1.5767 10 1 1.4167 4.8856 0.4702 11 6 2.1389 -1.1671 -0.0005 12 8 3.3496 -1.1701 0.1123 13 6 1.4066 -2.4428 -0.1381 14 6 1.8676 -3.5975 0.4989 15 7 1.2200 -4.7379 0.3801 16 6 0.1187 -4.8449 -0.3363 17 6 -0.4110 -3.7423 -1.0054 18 6 -1.6512 -3.8747 -1.8096 19 6 -2.1771 -2.7665 -2.4705 20 6 -3.3280 -2.8956 -3.2209 21 6 -3.9657 -4.1212 -3.3091 22 17 -5.4166 -4.2760 -4.2497 23 6 -3.4499 -5.2239 -2.6498 24 6 -2.2964 -5.1062 -1.9016 25 6 0.2445 -2.5145 -0.9131 26 1 -0.3633 -0.9352 0.4262 27 1 -0.3634 0.8365 0.5968 28 1 -0.3635 0.0985 -1.0229 29 1 0.0265 3.0350 -1.5718 30 1 2.7661 -3.5542 1.0967 31 1 -0.3804 -5.8001 -0.4060 32 1 -1.6826 -1.8090 -2.3990 33 1 -3.7343 -2.0381 -3.7366 34 1 -3.9511 -6.1779 -2.7212 35 1 -1.8946 -5.9671 -1.3880 36 1 -0.1371 -1.6421 -1.4228 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135206536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:13 Heat of formation + Delta-G solvation = 17.047517 kcal Electronic energy + Delta-G solvation = -22851.717136 eV Core-core repulsion = 19326.465195 eV Total energy + Delta-G solvation = -3525.251941 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.79683 -40.32972 -39.53695 -37.45819 -36.83496 -34.55475 -33.92908 -32.90463 -32.01995 -30.01270 -28.40232 -27.11607 -25.23662 -25.13365 -23.30186 -22.69057 -21.04120 -19.17461 -18.65916 -18.19058 -17.61840 -17.39406 -17.04675 -16.29110 -16.00800 -15.95195 -15.61334 -15.11377 -14.99735 -14.76009 -14.63893 -14.39437 -14.14571 -13.77872 -13.29075 -13.18677 -13.16200 -12.82384 -12.71221 -12.66278 -12.52820 -12.41218 -12.13003 -11.75223 -11.13881 -11.01645 -10.94957 -10.51812 -10.29976 -10.05577 -9.77039 -9.13628 -8.42331 -6.08770 -0.63570 -0.12954 0.31472 0.62227 1.14319 1.35874 1.40883 1.54233 1.95869 2.22379 2.53335 2.85370 2.92854 3.04531 3.29338 3.53921 3.62828 3.74472 3.83118 3.90900 3.94671 4.26100 4.28491 4.42028 4.43671 4.54360 4.70039 4.86439 4.88574 4.98449 5.03574 5.17895 5.21866 5.23812 5.38564 5.50731 5.53707 5.75352 6.00439 6.37202 6.81142 7.04664 7.29399 7.86719 8.59553 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.013756 B = 0.003690 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.048879 B = 7585.731612 C = 9500.954060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.443 5.443 3 C -0.349 4.349 4 H 0.075 0.925 5 C 0.006 3.994 6 N -0.887 5.887 7 Si 0.992 3.008 8 H -0.274 1.274 9 H -0.273 1.273 10 H -0.264 1.264 11 C 0.473 3.527 12 O -0.627 6.627 13 C -0.165 4.165 14 C 0.136 3.864 15 N -0.489 5.489 16 C 0.124 3.876 17 C -0.100 4.100 18 C -0.043 4.043 19 C -0.107 4.107 20 C -0.111 4.111 21 C -0.041 4.041 22 Cl -0.070 7.070 23 C -0.104 4.104 24 C -0.090 4.090 25 C -0.048 4.048 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.278 0.722 30 H 0.158 0.842 31 H 0.203 0.797 32 H 0.129 0.871 33 H 0.143 0.857 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.119 -13.506 -3.884 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.159 5.159 3 C -0.477 4.477 4 H 0.092 0.908 5 C -0.197 4.197 6 N -0.525 5.525 7 Si 0.815 3.185 8 H -0.198 1.198 9 H -0.198 1.198 10 H -0.188 1.188 11 C 0.263 3.737 12 O -0.516 6.516 13 C -0.170 4.170 14 C -0.021 4.021 15 N -0.197 5.197 16 C -0.034 4.034 17 C -0.102 4.102 18 C -0.044 4.044 19 C -0.126 4.126 20 C -0.130 4.130 21 C -0.067 4.067 22 Cl -0.041 7.041 23 C -0.123 4.123 24 C -0.107 4.107 25 C -0.074 4.074 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.175 0.825 31 H 0.219 0.781 32 H 0.147 0.853 33 H 0.161 0.839 34 H 0.179 0.821 35 H 0.184 0.816 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.510 -14.066 -3.574 19.828 hybrid contribution 0.179 2.128 -0.487 2.190 sum -13.331 -11.939 -4.060 18.350 Atomic orbital electron populations 1.21802 0.79426 0.99498 1.01912 1.43654 1.06758 1.04503 1.60959 1.19687 1.01383 0.86212 1.40407 0.90751 1.26130 0.96865 1.02896 0.93829 1.69963 1.19100 1.31357 1.32033 0.84904 0.78394 0.76850 0.78395 1.19839 1.19814 1.18834 1.18470 0.86919 0.84260 0.84060 1.90569 1.15614 1.87650 1.57777 1.20934 0.97760 0.95633 1.02709 1.22888 0.97859 0.86503 0.94837 1.67770 1.08607 1.25505 1.17802 1.23640 0.90713 0.99158 0.89883 1.19754 0.96447 0.93772 1.00209 1.18689 0.93379 0.94929 0.97377 1.21342 0.95805 0.98971 0.96449 1.21115 0.95291 0.97119 0.99450 1.21195 0.90860 0.95918 0.98752 1.98376 1.36078 1.98114 1.71512 1.21266 0.96145 0.98605 0.96243 1.21446 0.94296 0.96928 0.98077 1.22292 0.91909 0.98772 0.94378 0.92196 0.93073 0.91537 0.91205 0.82468 0.78100 0.85334 0.83877 0.82091 0.81578 0.83607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.02 7.08 127.77 0.90 5.93 16 2 N -0.44 -22.91 3.00 -662.32 -1.99 -24.90 16 3 C -0.35 -19.64 9.25 84.10 0.78 -18.86 16 4 H 0.07 4.49 7.42 -2.91 -0.02 4.47 16 5 C 0.01 0.32 5.15 84.96 0.44 0.75 16 6 N -0.89 -44.72 10.75 21.68 0.23 -44.48 16 7 Si 0.99 41.22 29.57 68.60 2.03 43.25 16 8 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 9 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 10 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 11 C 0.47 24.10 7.35 86.75 0.64 24.74 16 12 O -0.63 -36.63 16.50 -4.00 -0.07 -36.70 16 13 C -0.16 -6.59 5.22 -20.02 -0.10 -6.69 16 14 C 0.14 4.89 10.77 85.07 0.92 5.80 16 15 N -0.49 -14.78 10.33 -193.84 -2.00 -16.78 16 16 C 0.12 2.95 10.59 84.98 0.90 3.85 16 17 C -0.10 -2.59 5.89 -19.98 -0.12 -2.71 16 18 C -0.04 -0.92 5.88 -20.04 -0.12 -1.03 16 19 C -0.11 -2.43 9.44 22.48 0.21 -2.21 16 20 C -0.11 -2.21 9.81 22.26 0.22 -2.00 16 21 C -0.04 -0.73 6.32 22.36 0.14 -0.59 16 22 Cl -0.07 -1.17 28.95 -2.72 -0.08 -1.25 16 23 C -0.10 -1.52 9.81 22.26 0.22 -1.30 16 24 C -0.09 -1.37 9.44 22.48 0.21 -1.15 16 25 C -0.05 -1.59 7.05 22.97 0.16 -1.42 16 26 H 0.06 2.23 5.65 -2.38 -0.01 2.21 16 27 H 0.05 2.31 7.49 -2.39 -0.02 2.29 16 28 H 0.07 2.87 6.19 -2.39 -0.01 2.85 16 29 H 0.28 12.99 8.31 -92.71 -0.77 12.22 16 30 H 0.16 5.70 7.97 -2.91 -0.02 5.67 16 31 H 0.20 2.82 6.21 -2.91 -0.02 2.80 16 32 H 0.13 3.13 6.27 -2.91 -0.02 3.11 16 33 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.17 1.44 6.22 -2.91 -0.02 1.42 16 36 H 0.15 4.97 3.71 -2.91 -0.01 4.96 16 Total: -1.00 -67.21 321.03 4.67 -62.54 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 1.15 Total: 15.21 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 5.40 Total: 3.11 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -3.76 Total: -86.16 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.07 Total: -36.70 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -67.21 4.67 -62.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135206536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.588 kcal (2) G-P(sol) polarization free energy of solvation -67.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds