Wall clock time and date at job start Tue Mar 31 2020 11:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86791 * 120.00133 * 2 1 4 4 H 1.48508 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47080 * 300.00105 * 3 2 1 6 6 H 1.48493 * 109.47548 * 60.00255 * 3 2 1 7 7 C 1.37878 * 119.99376 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99307 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00387 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47144 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47399 * 180.02562 * 10 9 7 12 12 N 1.46490 * 109.47353 * 180.02562 * 11 10 9 13 13 C 1.34783 * 120.00162 * 180.02562 * 12 11 10 14 14 O 1.21615 * 119.99465 * 359.97438 * 13 12 11 15 15 C 1.47384 * 120.00141 * 180.02562 * 13 12 11 16 16 C 1.39980 * 120.61324 * 0.24937 * 15 13 12 17 17 C 1.38328 * 118.37279 * 180.24131 * 16 15 13 18 18 C 1.38403 * 119.52302 * 359.50648 * 17 16 15 19 19 N 1.31823 * 121.23303 * 0.25184 * 18 17 16 20 20 C 1.32513 * 121.75982 * 0.02562 * 19 18 17 21 21 S 1.76205 * 119.83030 * 180.02562 * 20 19 18 22 22 C 1.81006 * 100.00005 * 359.97438 * 21 20 19 23 23 F 1.39895 * 109.47083 * 300.00615 * 22 21 20 24 24 F 1.39902 * 109.46753 * 60.00297 * 22 21 20 25 25 H 0.96998 * 119.99342 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46794 * 60.00982 * 9 7 2 27 27 H 1.08996 * 109.47435 * 300.00476 * 9 7 2 28 28 H 1.09001 * 109.46979 * 59.99988 * 10 9 7 29 29 H 1.08996 * 109.47171 * 300.00426 * 10 9 7 30 30 H 1.09001 * 109.46940 * 59.99542 * 11 10 9 31 31 H 1.09010 * 109.46643 * 300.00541 * 11 10 9 32 32 H 0.97003 * 120.00457 * 359.97438 * 12 11 10 33 33 H 1.08001 * 120.81102 * 359.97438 * 16 15 13 34 34 H 1.08002 * 120.24083 * 179.78903 * 17 16 15 35 35 H 1.08007 * 119.38689 * 180.23409 * 18 17 16 36 36 H 1.08994 * 109.47204 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9872 -0.0012 12 7 2.4320 -6.1006 -0.0006 13 6 1.9827 -7.3714 -0.0015 14 8 0.7870 -7.5935 -0.0024 15 6 2.9404 -8.4917 -0.0003 16 6 4.3193 -8.2507 0.0070 17 6 5.1764 -9.3364 0.0027 18 6 4.6537 -10.6179 0.0018 19 7 3.3519 -10.8252 -0.0001 20 6 2.4860 -9.8221 -0.0016 21 16 0.7561 -10.1575 -0.0033 22 6 0.7869 -11.9673 -0.0031 23 9 1.4555 -12.4225 -1.1445 24 9 1.4530 -12.4222 1.1400 25 1 -0.4849 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 2.8718 -3.6044 0.8895 29 1 2.8718 -3.6044 -0.8904 30 1 0.8537 -5.0446 -0.8914 31 1 0.8531 -5.0451 0.8886 32 1 3.3857 -5.9235 -0.0002 33 1 4.7046 -7.2417 0.0115 34 1 6.2458 -9.1852 0.0047 35 1 5.3250 -11.4641 0.0022 36 1 -0.2344 -12.3480 -0.0036 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171593796.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:18 Heat of formation + Delta-G solvation = -101.094419 kcal Electronic energy + Delta-G solvation = -22885.865918 eV Core-core repulsion = 18939.138229 eV Total energy + Delta-G solvation = -3946.727689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.10131 -47.20003 -40.80377 -39.11419 -35.63531 -33.71834 -32.94699 -31.90815 -31.04972 -27.14421 -26.98811 -24.88922 -24.20946 -22.96893 -20.99055 -20.40411 -19.12893 -18.08715 -17.65684 -17.44810 -17.12027 -16.76713 -16.34779 -15.63062 -15.48237 -15.14827 -14.64849 -14.55362 -14.34076 -14.04441 -13.69165 -13.57812 -13.52273 -13.40227 -12.81243 -12.34663 -11.98699 -11.91331 -11.84510 -11.09490 -10.96719 -10.79633 -10.66112 -10.60148 -10.12405 -10.11445 -9.94995 -9.74419 -9.41088 -9.15925 -9.02146 -8.41904 -8.16195 -6.06320 -4.09621 0.20605 0.67062 0.77869 1.32827 2.65109 3.07605 3.26907 3.34720 3.37754 3.40868 3.69241 4.04006 4.26464 4.34502 4.38974 4.40049 4.41193 4.57750 4.76925 5.03273 5.29746 5.37453 5.58522 5.60000 5.67495 6.01207 6.06253 6.28210 6.50076 6.69721 6.91098 7.22829 7.44783 7.58199 7.69804 7.91983 8.07002 8.32796 8.97158 9.54955 11.04990 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.028351 B = 0.002406 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.382510 B =11637.087140 C =12434.072058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.713 5.713 13 C 0.551 3.449 14 O -0.513 6.513 15 C -0.167 4.167 16 C -0.026 4.026 17 C -0.180 4.180 18 C 0.142 3.858 19 N -0.479 5.479 20 C 0.148 3.852 21 S 0.062 5.938 22 C 0.227 3.773 23 F -0.183 7.183 24 F -0.183 7.183 25 H 0.261 0.739 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.398 0.602 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.166 0.834 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.463 -24.274 0.008 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.363 5.363 13 C 0.337 3.663 14 O -0.392 6.392 15 C -0.179 4.179 16 C -0.053 4.053 17 C -0.203 4.203 18 C -0.020 4.020 19 N -0.191 5.191 20 C -0.101 4.101 21 S 0.299 5.701 22 C 0.065 3.935 23 F -0.165 7.165 24 F -0.165 7.165 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.233 0.767 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.183 0.817 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.036 -24.523 0.007 25.255 hybrid contribution 2.534 1.033 0.002 2.737 sum 8.570 -23.489 0.009 25.004 Atomic orbital electron populations 1.69975 1.06063 1.26643 1.50507 1.25033 0.94863 0.99344 0.95231 0.86524 0.80019 0.83731 0.77643 1.19768 1.20975 1.20972 1.21222 0.93010 0.90901 1.50995 0.92597 1.19031 0.93819 0.90785 0.97746 1.21908 0.99856 0.93225 1.00956 1.21761 0.91742 0.84678 1.02483 1.46059 1.11050 1.05458 1.73759 1.17883 0.87865 0.82980 0.77598 1.90691 1.15610 1.82706 1.50170 1.20606 0.94967 0.93251 1.09082 1.21760 0.91290 1.00500 0.91759 1.22101 1.01684 0.93137 1.03390 1.22980 0.90881 0.97012 0.91124 1.68232 1.03978 1.32387 1.14455 1.23155 0.99190 0.90852 0.96894 1.88120 0.97146 0.95795 1.88990 1.24774 0.95177 0.99652 0.73889 1.93078 1.83113 1.90413 1.49886 1.93080 1.83233 1.90421 1.49763 0.92931 0.96194 0.96202 0.92634 0.92641 0.91256 0.91263 0.76699 0.83527 0.83529 0.81657 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.24 5.27 -26.73 -0.14 -2.38 16 11 C 0.12 1.90 5.67 -4.05 -0.02 1.88 16 12 N -0.71 -9.52 5.51 -61.40 -0.34 -9.86 16 13 C 0.55 7.98 7.75 -12.54 -0.10 7.88 16 14 O -0.51 -8.90 13.80 5.26 0.07 -8.82 16 15 C -0.17 -2.04 5.91 -104.63 -0.62 -2.65 16 16 C -0.03 -0.22 9.64 -38.90 -0.37 -0.59 16 17 C -0.18 -1.27 10.09 -39.49 -0.40 -1.66 16 18 C 0.14 1.21 11.16 -17.49 -0.20 1.02 16 19 N -0.48 -5.74 7.80 -11.68 -0.09 -5.83 16 20 C 0.15 1.94 6.91 -16.37 -0.11 1.82 16 21 S 0.06 0.79 19.25 -107.50 -2.07 -1.28 16 22 C 0.23 2.37 5.42 101.05 0.55 2.92 16 23 F -0.18 -2.20 16.44 2.25 0.04 -2.16 16 24 F -0.18 -2.20 16.44 2.25 0.04 -2.16 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.21 8.14 -51.92 -0.42 0.78 16 32 H 0.40 4.09 6.57 -40.82 -0.27 3.82 16 33 H 0.15 0.86 6.51 -52.49 -0.34 0.52 16 34 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.14 0.89 8.14 -51.92 -0.42 0.47 16 LS Contribution 332.97 15.07 5.02 5.02 Total: -1.00 -33.65 332.97 -7.54 -41.19 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -3.96 Total: -2.15 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -1.96 Total: -4.40 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.31 Total: -41.33 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.07 Total: -8.82 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.07 Total: -4.32 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.07 Total: -1.28 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.65 -7.54 -41.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171593796.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.904 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds