Wall clock time and date at job start Tue Mar 31 2020 11:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86791 * 120.00133 * 2 1 4 4 H 1.48508 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47080 * 300.00105 * 3 2 1 6 6 H 1.48493 * 109.47548 * 60.00255 * 3 2 1 7 7 C 1.37878 * 119.99376 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99307 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00387 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47144 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47399 * 180.02562 * 10 9 7 12 12 N 1.46490 * 109.47353 * 180.02562 * 11 10 9 13 13 C 1.34783 * 120.00162 * 180.02562 * 12 11 10 14 14 O 1.21615 * 119.99465 * 359.97438 * 13 12 11 15 15 C 1.47384 * 120.00141 * 180.02562 * 13 12 11 16 16 C 1.39980 * 120.61324 * 0.24937 * 15 13 12 17 17 C 1.38328 * 118.37279 * 180.24131 * 16 15 13 18 18 C 1.38403 * 119.52302 * 359.50648 * 17 16 15 19 19 N 1.31823 * 121.23303 * 0.25184 * 18 17 16 20 20 C 1.32513 * 121.75982 * 0.02562 * 19 18 17 21 21 S 1.76205 * 119.83030 * 180.02562 * 20 19 18 22 22 C 1.81006 * 100.00005 * 359.97438 * 21 20 19 23 23 F 1.39895 * 109.47083 * 300.00615 * 22 21 20 24 24 F 1.39902 * 109.46753 * 60.00297 * 22 21 20 25 25 H 0.96998 * 119.99342 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46794 * 60.00982 * 9 7 2 27 27 H 1.08996 * 109.47435 * 300.00476 * 9 7 2 28 28 H 1.09001 * 109.46979 * 59.99988 * 10 9 7 29 29 H 1.08996 * 109.47171 * 300.00426 * 10 9 7 30 30 H 1.09001 * 109.46940 * 59.99542 * 11 10 9 31 31 H 1.09010 * 109.46643 * 300.00541 * 11 10 9 32 32 H 0.97003 * 120.00457 * 359.97438 * 12 11 10 33 33 H 1.08001 * 120.81102 * 359.97438 * 16 15 13 34 34 H 1.08002 * 120.24083 * 179.78903 * 17 16 15 35 35 H 1.08007 * 119.38689 * 180.23409 * 18 17 16 36 36 H 1.08994 * 109.47204 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9872 -0.0012 12 7 2.4320 -6.1006 -0.0006 13 6 1.9827 -7.3714 -0.0015 14 8 0.7870 -7.5935 -0.0024 15 6 2.9404 -8.4917 -0.0003 16 6 4.3193 -8.2507 0.0070 17 6 5.1764 -9.3364 0.0027 18 6 4.6537 -10.6179 0.0018 19 7 3.3519 -10.8252 -0.0001 20 6 2.4860 -9.8221 -0.0016 21 16 0.7561 -10.1575 -0.0033 22 6 0.7869 -11.9673 -0.0031 23 9 1.4555 -12.4225 -1.1445 24 9 1.4530 -12.4222 1.1400 25 1 -0.4849 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 2.8718 -3.6044 0.8895 29 1 2.8718 -3.6044 -0.8904 30 1 0.8537 -5.0446 -0.8914 31 1 0.8531 -5.0451 0.8886 32 1 3.3857 -5.9235 -0.0002 33 1 4.7046 -7.2417 0.0115 34 1 6.2458 -9.1852 0.0047 35 1 5.3250 -11.4641 0.0022 36 1 -0.2344 -12.3480 -0.0036 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171593796.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:17 Heat of formation + Delta-G solvation = -123.184700 kcal Electronic energy + Delta-G solvation = -22886.823824 eV Core-core repulsion = 18939.138229 eV Total energy + Delta-G solvation = -3947.685595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.98724 -48.09442 -41.68150 -40.12022 -37.05910 -35.32644 -34.08816 -32.90729 -32.41966 -28.73085 -27.91099 -26.04592 -25.01660 -24.43885 -22.37519 -21.75086 -19.97814 -19.03311 -18.58085 -18.46673 -18.33331 -17.86746 -17.59007 -16.83973 -16.66043 -16.36810 -15.85439 -15.78294 -15.47414 -15.07028 -14.75792 -14.52201 -14.42862 -14.32741 -14.05334 -13.74977 -13.57789 -13.52994 -12.82022 -12.78274 -12.55201 -12.35786 -12.03568 -11.68361 -11.47912 -11.35616 -11.18711 -10.95404 -10.90610 -10.55416 -10.53906 -10.23118 -9.06597 -8.19050 -6.30203 -0.59323 -0.05485 -0.01840 0.48870 1.42487 1.42850 1.55626 1.68872 1.97696 2.42822 2.60565 2.94417 3.15253 3.31712 3.52080 3.54844 3.59433 3.67069 3.88099 4.09948 4.19330 4.21525 4.41092 4.54618 4.76454 4.93222 4.94437 4.98487 5.17537 5.32738 5.43559 5.53061 5.71749 5.85349 6.22504 6.37948 6.52375 6.87950 7.02202 7.39599 8.93280 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.028351 B = 0.002406 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.382510 B =11637.087140 C =12434.072058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.102 4.102 11 C 0.130 3.870 12 N -0.701 5.701 13 C 0.548 3.452 14 O -0.550 6.550 15 C -0.186 4.186 16 C -0.023 4.023 17 C -0.159 4.159 18 C 0.136 3.864 19 N -0.503 5.503 20 C 0.130 3.870 21 S 0.008 5.992 22 C 0.237 3.763 23 F -0.192 7.192 24 F -0.192 7.192 25 H 0.263 0.737 26 H -0.008 1.008 27 H -0.008 1.008 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.416 0.584 33 H 0.177 0.823 34 H 0.192 0.808 35 H 0.199 0.801 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.019 -24.716 0.013 27.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.181 1.181 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.140 4.140 11 C 0.007 3.993 12 N -0.353 5.353 13 C 0.336 3.664 14 O -0.431 6.431 15 C -0.199 4.199 16 C -0.050 4.050 17 C -0.181 4.181 18 C -0.025 4.025 19 N -0.215 5.215 20 C -0.119 4.119 21 S 0.245 5.755 22 C 0.075 3.925 23 F -0.174 7.174 24 F -0.174 7.174 25 H 0.071 0.929 26 H 0.011 0.989 27 H 0.011 0.989 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.254 0.746 33 H 0.194 0.806 34 H 0.209 0.791 35 H 0.215 0.785 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 9.643 -24.976 0.012 26.773 hybrid contribution 1.514 1.070 0.001 1.854 sum 11.157 -23.906 0.012 26.382 Atomic orbital electron populations 1.70121 1.07954 1.27695 1.51836 1.26021 0.95725 1.03558 0.94875 0.85380 0.79284 0.78719 0.77538 1.18058 1.20714 1.20704 1.21715 0.93798 0.91955 1.50185 0.91399 1.18946 0.94473 0.92956 0.95117 1.21605 0.98472 0.91533 1.02363 1.21318 0.91809 0.85039 1.01161 1.45748 1.11431 1.04406 1.73686 1.18289 0.87917 0.83561 0.76668 1.90684 1.17420 1.83459 1.51580 1.20476 0.96076 0.91919 1.11380 1.22175 0.89688 1.02664 0.90445 1.22578 1.03580 0.91681 1.00288 1.23699 0.90070 0.99160 0.89599 1.68225 1.05449 1.32391 1.15454 1.23103 0.98849 0.91511 0.98433 1.88142 0.99199 0.98615 1.89511 1.24977 0.96656 0.97793 0.73055 1.93051 1.83570 1.90284 1.50455 1.93053 1.83688 1.90292 1.50334 0.92861 0.98935 0.98940 0.91103 0.91115 0.92755 0.92760 0.74619 0.80591 0.79094 0.78456 0.80326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.50 13.29 21.45 0.28 -56.22 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 3 Si 0.97 43.03 29.54 68.60 2.03 45.05 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.54 -29.28 9.11 25.60 0.23 -29.04 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.15 4.97 29.85 0.15 1.30 16 10 C -0.10 -3.68 5.27 30.59 0.16 -3.52 16 11 C 0.13 4.33 5.67 86.38 0.49 4.82 16 12 N -0.70 -18.07 5.51 -466.41 -2.57 -20.64 16 13 C 0.55 15.94 7.75 86.65 0.67 16.61 16 14 O -0.55 -19.98 13.80 -4.08 -0.06 -20.04 16 15 C -0.19 -4.37 5.91 -19.87 -0.12 -4.49 16 16 C -0.02 -0.32 9.64 22.71 0.22 -0.10 16 17 C -0.16 -1.53 10.09 22.33 0.23 -1.31 16 18 C 0.14 1.89 11.16 84.73 0.95 2.84 16 19 N -0.50 -11.41 7.80 -190.86 -1.49 -12.90 16 20 C 0.13 3.36 6.91 85.17 0.59 3.95 16 21 S 0.01 0.21 19.25 -56.49 -1.09 -0.87 16 22 C 0.24 4.88 5.42 113.37 0.61 5.50 16 23 F -0.19 -4.54 16.44 44.97 0.74 -3.80 16 24 F -0.19 -4.54 16.44 44.97 0.74 -3.80 16 25 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 26 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 28 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 30 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.42 7.48 6.57 -92.71 -0.61 6.87 16 33 H 0.18 1.29 6.51 -2.91 -0.02 1.27 16 34 H 0.19 0.17 8.06 -2.91 -0.02 0.15 16 35 H 0.20 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.18 2.14 8.14 -2.40 -0.02 2.12 16 Total: -1.00 -76.46 332.97 3.75 -72.71 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 0.52 Total: 3.72 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 4.64 Total: -3.21 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -3.77 Total: -89.76 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.06 Total: -20.04 kcal Atomic # 9 Polarization: -9.08 SS G_CDS: 1.48 Total: -7.60 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -1.09 Total: -0.87 kcal Total: -76.46 3.75 -72.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171593796.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.473 kcal (2) G-P(sol) polarization free energy of solvation -76.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds