Wall clock time and date at job start Tue Mar 31 2020 11:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86794 * 120.00034 * 2 1 4 4 H 1.48496 * 109.47134 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46952 * 299.99928 * 3 2 1 6 6 H 1.48500 * 109.47443 * 59.99947 * 3 2 1 7 7 C 1.38994 * 119.99522 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99187 * 180.02562 * 7 2 1 9 9 N 1.36885 * 120.00495 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99752 * 179.97438 * 9 7 2 11 11 O 1.21710 * 120.00385 * 0.02562 * 10 9 7 12 12 C 1.46895 * 119.99554 * 180.02562 * 10 9 7 13 13 N 1.35947 * 126.63967 * 354.47681 * 12 10 9 14 14 C 1.29902 * 108.75587 * 180.27266 * 13 12 10 15 15 O 1.34082 * 109.83918 * 359.74664 * 14 13 12 16 16 C 1.34804 * 108.24864 * 0.02562 * 15 14 13 17 17 C 1.47411 * 126.78752 * 179.97438 * 16 15 14 18 18 C 1.39783 * 120.11218 * 307.60229 * 17 16 15 19 19 C 1.37770 * 119.95159 * 180.02562 * 18 17 16 20 20 C 1.38967 * 120.28410 * 359.97438 * 19 18 17 21 21 C 1.39233 * 120.06871 * 359.89637 * 20 19 18 22 22 C 1.38327 * 119.97289 * 0.17984 * 21 20 19 23 23 O 1.36145 * 120.75801 * 180.41926 * 21 20 19 24 24 C 1.43163 * 116.72170 * 342.76333 * 23 21 20 25 25 C 1.53468 * 108.24587 * 46.17266 * 24 23 21 26 26 O 1.36058 * 119.22297 * 179.82879 * 20 19 18 27 27 H 0.97000 * 120.00280 * 359.97438 * 1 2 3 28 28 H 0.96992 * 119.99865 * 0.02562 * 9 7 2 29 29 H 1.08000 * 125.08049 * 179.73191 * 14 13 12 30 30 H 1.08004 * 120.02819 * 359.76128 * 18 17 16 31 31 H 1.07996 * 119.85897 * 179.97438 * 19 18 17 32 32 H 1.07999 * 120.02415 * 179.88917 * 22 21 20 33 33 H 1.08999 * 109.70103 * 286.48842 * 24 23 21 34 34 H 1.08996 * 109.74517 * 165.88294 * 24 23 21 35 35 H 1.09001 * 109.71292 * 180.51394 * 25 24 23 36 36 H 1.09004 * 109.74688 * 59.90865 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7080 1.3463 0.0006 5 1 1.8893 2.3963 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2038 0.0005 8 1 3.0890 -1.2037 0.0010 9 7 1.3245 -2.3892 0.0016 10 6 1.9985 -3.5565 0.0016 11 8 3.2156 -3.5565 0.0011 12 6 1.2639 -4.8286 0.0022 13 7 -0.0820 -4.9882 0.1077 14 6 -0.3558 -6.2577 0.0755 15 8 0.7762 -6.9642 -0.0553 16 6 1.8095 -6.1000 -0.1073 17 6 3.2374 -6.4387 -0.2471 18 6 3.8282 -7.3595 0.6230 19 6 5.1631 -7.6732 0.4897 20 6 5.9265 -7.0783 -0.5075 21 6 5.3439 -6.1624 -1.3794 22 6 4.0046 -5.8413 -1.2506 23 8 6.0766 -5.5776 -2.3666 24 6 7.5008 -5.6415 -2.2352 25 6 7.8844 -7.0783 -1.8563 26 8 7.2437 -7.4013 -0.6174 27 1 -0.4850 0.8400 0.0004 28 1 0.3546 -2.3892 0.0016 29 1 -1.3471 -6.6807 0.1442 30 1 3.2397 -7.8215 1.4020 31 1 5.6181 -8.3845 1.1630 32 1 3.5522 -5.1296 -1.9253 33 1 7.8289 -4.9554 -1.4544 34 1 7.9703 -5.3731 -3.1815 35 1 8.9658 -7.1519 -1.7409 36 1 7.5501 -7.7659 -2.6333 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173373419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:40 Heat of formation + Delta-G solvation = -52.774582 kcal Electronic energy + Delta-G solvation = -25723.184498 eV Core-core repulsion = 21754.195678 eV Total energy + Delta-G solvation = -3968.988819 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.78812 -41.11626 -38.02445 -37.55348 -37.18550 -34.30112 -34.02857 -31.93397 -31.24045 -30.83661 -29.41944 -27.84268 -25.56783 -24.70157 -23.32512 -22.52435 -22.06720 -20.50672 -19.55835 -18.63497 -18.06729 -17.50694 -17.18721 -16.84996 -16.18012 -15.68946 -15.33001 -15.06805 -14.82131 -14.50027 -14.36166 -14.13802 -13.88715 -13.76449 -13.52545 -13.24702 -12.92835 -12.64992 -12.24544 -11.80954 -11.60926 -11.22466 -11.19694 -11.09448 -10.83708 -10.48345 -10.38635 -10.36476 -10.20596 -9.59736 -8.92082 -8.56872 -8.23004 -8.03677 -7.73219 -6.52824 -3.85550 0.95525 1.49915 1.80558 2.64168 2.86996 3.02991 3.17923 3.22988 3.30098 3.30998 3.85713 4.09119 4.17705 4.31728 4.42056 4.67934 4.72052 4.80951 4.90915 4.99869 5.11649 5.29321 5.31233 5.38339 5.44530 5.54508 5.79686 5.88974 6.04365 6.08601 6.26425 6.30520 6.58958 6.68481 6.72258 6.93586 7.45024 7.48356 7.85812 8.03074 8.55606 9.07373 9.48062 10.01962 10.63353 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.012095 B = 0.004474 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.523768 B = 6256.998901 C = 8193.117476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.294 4.294 8 H 0.110 0.890 9 N -0.525 5.525 10 C 0.494 3.506 11 O -0.585 6.585 12 C -0.003 4.003 13 N -0.464 5.464 14 C 0.163 3.837 15 O -0.200 6.200 16 C 0.026 3.974 17 C 0.002 3.998 18 C -0.089 4.089 19 C -0.122 4.122 20 C 0.058 3.942 21 C 0.049 3.951 22 C -0.034 4.034 23 O -0.303 6.303 24 C 0.020 3.980 25 C 0.021 3.979 26 O -0.308 6.308 27 H 0.275 0.725 28 H 0.402 0.598 29 H 0.250 0.750 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.075 -15.501 -2.819 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.180 4.180 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.424 4.424 8 H 0.127 0.873 9 N -0.158 5.158 10 C 0.281 3.719 11 O -0.471 6.471 12 C -0.125 4.125 13 N -0.193 5.193 14 C -0.064 4.064 15 O -0.087 6.087 16 C -0.030 4.030 17 C 0.001 3.999 18 C -0.107 4.107 19 C -0.141 4.141 20 C 0.013 3.987 21 C 0.004 3.996 22 C -0.052 4.052 23 O -0.218 6.218 24 C -0.055 4.055 25 C -0.055 4.055 26 O -0.223 6.223 27 H 0.085 0.915 28 H 0.237 0.763 29 H 0.265 0.735 30 H 0.151 0.849 31 H 0.154 0.846 32 H 0.158 0.842 33 H 0.096 0.904 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.329 -14.836 -2.793 17.242 hybrid contribution 0.101 0.409 -0.057 0.425 sum 8.430 -14.427 -2.850 16.950 Atomic orbital electron populations 1.69661 1.06142 1.28611 1.47631 1.25429 0.95679 1.00148 0.96704 0.85722 0.79773 0.80536 0.77890 1.18957 1.20491 1.20498 1.19904 0.93758 0.82023 1.46698 0.87270 1.41826 1.10092 1.04239 1.59633 1.16213 0.86593 0.81437 0.87696 1.90692 1.11970 1.86052 1.58433 1.22673 0.88395 0.95372 1.06089 1.70783 1.14362 1.17670 1.16530 1.27909 0.90969 0.85957 1.01542 1.84386 1.15729 1.38889 1.69701 1.21320 0.87439 0.87021 1.07210 1.16904 0.86624 0.99273 0.97143 1.20920 0.94007 0.97108 0.98664 1.20146 0.92664 1.02048 0.99237 1.19014 0.84131 0.96913 0.98609 1.18531 0.92251 0.95959 0.92830 1.20270 0.90559 0.97233 0.97178 1.86345 1.17802 1.74481 1.43130 1.23599 0.80337 0.96910 1.04698 1.23613 0.99234 0.96499 0.86126 1.86262 1.20460 1.79207 1.36348 0.91460 0.76291 0.73457 0.84921 0.84610 0.84183 0.90353 0.86220 0.86284 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.21 13.05 55.50 0.72 -23.48 16 2 C 0.02 0.66 5.50 -17.45 -0.10 0.56 16 3 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.29 -8.30 9.68 -15.02 -0.15 -8.45 16 8 H 0.11 3.18 7.15 -52.48 -0.38 2.80 16 9 N -0.52 -14.27 5.28 -12.11 -0.06 -14.33 16 10 C 0.49 12.79 7.70 -12.75 -0.10 12.69 16 11 O -0.59 -16.13 13.62 5.18 0.07 -16.06 16 12 C 0.00 -0.07 7.04 -82.34 -0.58 -0.65 16 13 N -0.46 -9.05 11.04 -11.03 -0.12 -9.17 16 14 C 0.16 2.36 13.15 51.95 0.68 3.04 16 15 O -0.20 -3.18 10.75 4.91 0.05 -3.12 16 16 C 0.03 0.49 6.83 -35.64 -0.24 0.25 16 17 C 0.00 0.03 5.21 -105.03 -0.55 -0.52 16 18 C -0.09 -1.34 9.78 -39.18 -0.38 -1.73 16 19 C -0.12 -1.73 9.94 -39.48 -0.39 -2.13 16 20 C 0.06 0.90 6.50 -38.94 -0.25 0.65 16 21 C 0.05 0.84 6.49 -39.18 -0.25 0.59 16 22 C -0.03 -0.64 7.73 -38.99 -0.30 -0.94 16 23 O -0.30 -4.83 10.41 -32.95 -0.34 -5.18 16 24 C 0.02 0.22 7.26 37.40 0.27 0.49 16 25 C 0.02 0.20 7.26 37.40 0.27 0.47 16 26 O -0.31 -4.11 10.41 -32.68 -0.34 -4.45 16 27 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.40 10.89 7.63 -40.82 -0.31 10.58 16 29 H 0.25 2.03 8.06 -52.49 -0.42 1.60 16 30 H 0.13 1.70 8.06 -52.48 -0.42 1.27 16 31 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.14 2.87 7.76 -52.49 -0.41 2.46 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.12 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 323.11 15.07 4.87 4.87 Total: -1.00 -34.27 323.11 -5.43 -39.70 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -3.19 Total: 11.10 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -2.07 Total: 4.33 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.54 Total: -46.99 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.56 Total: -28.82 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.27 -5.43 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173373419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.072 kcal (2) G-P(sol) polarization free energy of solvation -34.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds