Wall clock time and date at job start Tue Mar 31 2020 11:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21610 * 119.99823 * 0.02562 * 14 13 3 16 16 C 1.47386 * 120.00220 * 180.02562 * 14 13 3 17 17 C 1.39979 * 120.60837 * 359.72300 * 16 14 13 18 18 C 1.38339 * 118.36883 * 179.73679 * 17 16 14 19 19 C 1.38407 * 119.52306 * 0.54109 * 18 17 16 20 20 N 1.31807 * 121.23011 * 359.71851 * 19 18 17 21 21 C 1.32512 * 121.76862 * 0.02562 * 20 19 18 22 22 S 1.76206 * 119.83457 * 180.02562 * 21 20 19 23 23 C 1.80994 * 99.99896 * 359.97438 * 22 21 20 24 24 F 1.39902 * 109.47142 * 299.99581 * 23 22 21 25 25 F 1.39895 * 109.47373 * 59.99941 * 23 22 21 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 32 32 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 33 33 H 1.07993 * 120.81889 * 359.97438 * 17 16 14 34 34 H 1.08002 * 120.23852 * 180.26596 * 18 17 16 35 35 H 1.08003 * 119.38375 * 179.74540 * 19 18 17 36 36 H 1.08998 * 109.46891 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3417 2.6318 0.4320 16 6 0.0454 3.3237 2.6262 17 6 0.9273 3.3636 3.7125 18 6 0.5159 3.9994 4.8702 19 6 -0.7470 4.5629 4.9269 20 7 -1.5656 4.5106 3.8952 21 6 -1.2213 3.9188 2.7607 22 16 -2.3558 3.8792 1.4131 23 6 -3.7507 4.7661 2.1505 24 9 -4.1926 4.0786 3.2860 25 9 -3.3446 6.0545 2.5140 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8292 -0.0609 -2.9500 32 1 2.2719 2.1231 1.9979 33 1 1.9064 2.9125 3.6472 34 1 1.1737 4.0517 5.7252 35 1 -1.0674 5.0551 5.8333 36 1 -4.5631 4.8314 1.4268 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183949571.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:14 Heat of formation + Delta-G solvation = -91.922833 kcal Electronic energy + Delta-G solvation = -24222.466214 eV Core-core repulsion = 20276.136235 eV Total energy + Delta-G solvation = -3946.329979 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.86123 -46.96227 -40.42161 -38.70976 -35.24362 -33.24148 -32.19929 -31.58268 -30.64525 -27.14600 -26.83016 -24.60401 -23.88065 -22.95856 -20.77906 -19.56139 -18.86328 -17.94044 -17.47606 -17.21304 -16.93070 -16.45947 -15.87494 -15.32634 -14.97463 -14.78746 -14.57259 -14.07137 -13.83868 -13.68512 -13.29218 -13.26548 -13.08063 -12.73378 -12.50673 -12.14387 -11.69247 -11.59224 -11.31355 -11.09312 -10.88738 -10.65466 -10.38338 -10.31712 -10.24362 -9.81264 -9.77788 -9.64000 -9.14943 -8.98342 -8.57523 -8.11789 -7.75177 -6.18792 -4.29047 0.57288 0.98784 1.08326 1.65064 3.13383 3.21347 3.27386 3.27757 3.78226 3.86569 3.91384 4.28337 4.37278 4.60257 4.62984 4.63657 4.79608 4.96803 5.11698 5.13423 5.46577 5.74353 5.91273 6.32236 6.34494 6.40600 6.59774 6.97690 7.11797 7.22940 7.31528 7.50638 7.54891 7.62845 7.80713 8.09354 8.46708 8.64419 8.89569 9.37979 10.86409 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.021638 B = 0.003785 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.681797 B = 7395.147366 C = 8068.458797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.053 0.947 5 C -0.538 4.538 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.693 5.693 14 C 0.541 3.459 15 O -0.516 6.516 16 C -0.158 4.158 17 C -0.029 4.029 18 C -0.182 4.182 19 C 0.133 3.867 20 N -0.480 5.480 21 C 0.143 3.857 22 S 0.071 5.929 23 C 0.221 3.779 24 F -0.186 7.186 25 F -0.186 7.186 26 H 0.037 0.963 27 H 0.024 0.976 28 H 0.051 0.949 29 H 0.031 0.969 30 H 0.101 0.899 31 H 0.266 0.734 32 H 0.388 0.612 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.163 0.837 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.651 6.640 12.189 16.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.071 0.929 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.340 5.340 14 C 0.326 3.674 15 O -0.397 6.397 16 C -0.170 4.170 17 C -0.057 4.057 18 C -0.205 4.205 19 C -0.029 4.029 20 N -0.192 5.192 21 C -0.106 4.106 22 S 0.307 5.693 23 C 0.058 3.942 24 F -0.167 7.167 25 F -0.167 7.167 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.222 0.778 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.180 0.820 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.048 6.442 10.190 15.694 hybrid contribution 2.118 0.177 1.718 2.733 sum -7.930 6.619 11.908 15.764 Atomic orbital electron populations 1.21846 0.98184 0.98262 1.01258 1.21945 0.92729 0.99543 1.02436 1.18892 0.94431 0.89290 0.80463 0.92881 1.21148 0.90486 1.39525 1.06491 0.92135 1.24864 0.98650 0.94664 0.95298 1.69871 1.35307 1.37248 1.09293 0.86509 0.84734 0.78351 0.77520 1.20145 1.21073 1.20160 1.46421 1.13790 1.54920 1.18854 1.17804 0.83592 0.79739 0.86252 1.90650 1.50240 1.59794 1.38991 1.20920 0.94768 1.03956 0.97329 1.21789 0.98783 0.93754 0.91374 1.22060 0.98179 1.00958 0.99267 1.22875 0.89855 0.94022 0.96107 1.68176 1.35006 1.16848 0.99152 1.23141 0.95102 0.95776 0.96616 1.88200 1.04172 1.66015 1.10889 1.24879 1.01793 0.79537 0.87944 1.93066 1.90487 1.78894 1.54296 1.93065 1.91625 1.38882 1.93148 0.94378 0.95705 0.92942 0.94990 0.88097 0.92392 0.77833 0.83580 0.83896 0.82026 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.51 37.16 0.32 -2.65 16 2 C -0.13 -2.97 5.45 -26.73 -0.15 -3.12 16 3 C 0.27 6.46 2.24 -69.08 -0.15 6.31 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.54 -13.57 8.73 -34.44 -0.30 -13.87 16 6 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -23.83 11.29 55.43 0.63 -23.20 16 9 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.69 -13.58 4.97 -56.02 -0.28 -13.86 16 14 C 0.54 10.41 6.32 -12.54 -0.08 10.33 16 15 O -0.52 -11.14 10.93 5.27 0.06 -11.08 16 16 C -0.16 -2.53 5.91 -104.63 -0.62 -3.15 16 17 C -0.03 -0.36 9.64 -38.89 -0.37 -0.74 16 18 C -0.18 -1.83 10.09 -39.48 -0.40 -2.22 16 19 C 0.13 1.51 11.16 -17.50 -0.20 1.31 16 20 N -0.48 -7.10 7.80 -11.68 -0.09 -7.19 16 21 C 0.14 2.32 6.91 -16.37 -0.11 2.20 16 22 S 0.07 1.11 19.25 -107.50 -2.07 -0.96 16 23 C 0.22 2.84 5.42 101.05 0.55 3.38 16 24 F -0.19 -2.65 16.44 2.25 0.04 -2.62 16 25 F -0.19 -2.66 16.44 2.25 0.04 -2.62 16 26 H 0.04 0.80 5.64 -51.93 -0.29 0.50 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 31 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.39 6.49 6.64 -40.82 -0.27 6.22 16 33 H 0.15 1.49 6.51 -52.49 -0.34 1.15 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.14 1.19 8.14 -51.92 -0.42 0.77 16 LS Contribution 320.40 15.07 4.83 4.83 Total: -1.00 -30.28 320.40 -7.15 -37.43 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -3.67 Total: 4.88 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.61 Total: -0.52 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.26 Total: -44.25 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.06 Total: -11.08 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.07 Total: -5.24 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.07 Total: -0.96 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.28 -7.15 -37.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183949571.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.493 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds