Wall clock time and date at job start Tue Mar 31 2020 11:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21610 * 119.99823 * 0.02562 * 14 13 3 16 16 C 1.47386 * 120.00220 * 180.02562 * 14 13 3 17 17 C 1.39979 * 120.60837 * 359.72300 * 16 14 13 18 18 C 1.38339 * 118.36883 * 179.73679 * 17 16 14 19 19 C 1.38407 * 119.52306 * 0.54109 * 18 17 16 20 20 N 1.31807 * 121.23011 * 359.71851 * 19 18 17 21 21 C 1.32512 * 121.76862 * 0.02562 * 20 19 18 22 22 S 1.76206 * 119.83457 * 180.02562 * 21 20 19 23 23 C 1.80994 * 99.99896 * 359.97438 * 22 21 20 24 24 F 1.39902 * 109.47142 * 299.99581 * 23 22 21 25 25 F 1.39895 * 109.47373 * 59.99941 * 23 22 21 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 32 32 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 33 33 H 1.07993 * 120.81889 * 359.97438 * 17 16 14 34 34 H 1.08002 * 120.23852 * 180.26596 * 18 17 16 35 35 H 1.08003 * 119.38375 * 179.74540 * 19 18 17 36 36 H 1.08998 * 109.46891 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3417 2.6318 0.4320 16 6 0.0454 3.3237 2.6262 17 6 0.9273 3.3636 3.7125 18 6 0.5159 3.9994 4.8702 19 6 -0.7470 4.5629 4.9269 20 7 -1.5656 4.5106 3.8952 21 6 -1.2213 3.9188 2.7607 22 16 -2.3558 3.8792 1.4131 23 6 -3.7507 4.7661 2.1505 24 9 -4.1926 4.0786 3.2860 25 9 -3.3446 6.0545 2.5140 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8292 -0.0609 -2.9500 32 1 2.2719 2.1231 1.9979 33 1 1.9064 2.9125 3.6472 34 1 1.1737 4.0517 5.7252 35 1 -1.0674 5.0551 5.8333 36 1 -4.5631 4.8314 1.4268 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183949571.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:13 Heat of formation + Delta-G solvation = -110.934929 kcal Electronic energy + Delta-G solvation = -24223.290641 eV Core-core repulsion = 20276.136235 eV Total energy + Delta-G solvation = -3947.154405 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.94776 -48.05466 -41.59926 -40.08677 -36.99836 -34.65404 -33.78701 -32.79175 -32.14090 -28.98913 -27.86908 -25.90594 -24.98277 -24.60525 -22.32763 -21.27043 -20.02010 -19.28357 -18.60802 -18.29763 -18.16214 -17.66081 -17.40545 -16.92339 -16.44014 -16.17400 -15.74949 -15.42030 -15.18256 -14.81763 -14.57898 -14.46599 -14.39276 -14.15626 -13.79041 -13.53596 -13.44421 -13.16023 -12.93051 -12.74066 -12.64329 -12.20137 -12.09072 -11.78504 -11.53493 -11.29971 -11.07654 -10.86789 -10.82749 -10.53717 -10.34183 -9.74541 -8.98062 -8.14890 -6.32293 -0.49798 0.01143 0.02175 0.56415 1.46939 1.48171 1.55821 1.90103 2.28942 2.51508 2.69704 2.96699 3.15089 3.40382 3.59133 3.64830 3.66883 3.76088 3.93608 4.22184 4.44457 4.51116 4.58258 4.76858 4.82851 5.01035 5.07736 5.27403 5.43690 5.46795 5.52587 5.59780 5.79077 5.89847 6.16416 6.55060 6.73559 6.86213 7.29883 7.45683 8.90150 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.021638 B = 0.003785 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.681797 B = 7395.147366 C = 8068.458797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.280 3.720 4 H 0.003 0.997 5 C -0.549 4.549 6 H 0.073 0.927 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.968 3.032 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.691 5.691 14 C 0.539 3.461 15 O -0.548 6.548 16 C -0.182 4.182 17 C -0.029 4.029 18 C -0.158 4.158 19 C 0.133 3.867 20 N -0.500 5.500 21 C 0.129 3.871 22 S 0.012 5.988 23 C 0.234 3.766 24 F -0.192 7.192 25 F -0.193 7.193 26 H 0.040 0.960 27 H 0.043 0.957 28 H 0.029 0.971 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.265 0.735 32 H 0.403 0.597 33 H 0.168 0.832 34 H 0.192 0.808 35 H 0.201 0.799 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 7.385 15.294 18.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.021 0.979 5 C -0.588 4.588 6 H 0.091 0.909 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.340 5.340 14 C 0.325 3.675 15 O -0.430 6.430 16 C -0.195 4.195 17 C -0.056 4.056 18 C -0.180 4.180 19 C -0.028 4.028 20 N -0.213 5.213 21 C -0.120 4.120 22 S 0.248 5.752 23 C 0.072 3.928 24 F -0.174 7.174 25 F -0.174 7.174 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.239 0.761 33 H 0.185 0.815 34 H 0.209 0.791 35 H 0.218 0.782 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -9.142 7.200 13.336 17.699 hybrid contribution 1.771 0.037 0.892 1.984 sum -7.371 7.237 14.228 17.583 Atomic orbital electron populations 1.21670 0.96956 0.99122 1.00277 1.21788 0.93710 0.99036 1.01397 1.18430 0.93792 0.89163 0.80870 0.97874 1.21519 0.91242 1.39166 1.06829 0.90882 1.25721 1.03115 0.94345 0.95007 1.70031 1.37105 1.38173 1.09816 0.85457 0.79299 0.78390 0.77540 1.18840 1.21400 1.19757 1.46100 1.14648 1.55304 1.17956 1.18290 0.82799 0.79124 0.87251 1.90647 1.51120 1.60654 1.40627 1.20664 0.96030 1.05811 0.96969 1.22132 0.98954 0.93590 0.90955 1.22551 0.97983 0.98042 0.99452 1.23677 0.89987 0.93000 0.96171 1.68202 1.36273 1.17322 0.99471 1.23054 0.94996 0.96847 0.97062 1.88232 1.06584 1.67234 1.13102 1.25022 1.01254 0.78322 0.88163 1.93045 1.90331 1.79115 1.54908 1.93043 1.91804 1.39328 1.93265 0.94080 0.93749 0.95169 0.94054 0.90836 0.92598 0.76083 0.81506 0.79113 0.78220 0.80400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.51 71.98 0.61 -4.82 16 2 C -0.12 -5.76 5.45 30.59 0.17 -5.59 16 3 C 0.28 13.85 2.24 44.24 0.10 13.94 16 4 H 0.00 0.20 7.58 -2.39 -0.02 0.18 16 5 C -0.55 -27.91 8.73 25.60 0.22 -27.69 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.97 5.29 84.66 0.45 1.42 16 8 N -0.91 -50.95 11.29 21.45 0.24 -50.71 16 9 Si 0.97 40.79 29.54 68.60 2.03 42.81 16 10 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 11 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 13 N -0.69 -27.39 4.97 -449.42 -2.24 -29.62 16 14 C 0.54 21.22 6.32 86.65 0.55 21.77 16 15 O -0.55 -24.95 10.93 -4.06 -0.04 -25.00 16 16 C -0.18 -5.77 5.91 -19.87 -0.12 -5.89 16 17 C -0.03 -0.64 9.64 22.72 0.22 -0.42 16 18 C -0.16 -2.45 10.09 22.33 0.23 -2.22 16 19 C 0.13 2.50 11.16 84.74 0.95 3.45 16 20 N -0.50 -13.88 7.80 -190.86 -1.49 -15.37 16 21 C 0.13 4.14 6.91 85.17 0.59 4.73 16 22 S 0.01 0.37 19.25 -56.49 -1.09 -0.72 16 23 C 0.23 5.84 5.42 113.37 0.61 6.45 16 24 F -0.19 -5.29 16.44 44.97 0.74 -4.55 16 25 F -0.19 -5.34 16.44 44.97 0.74 -4.60 16 26 H 0.04 1.77 5.64 -2.39 -0.01 1.75 16 27 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.03 1.43 7.84 -2.38 -0.02 1.41 16 29 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 3.95 5.95 -2.39 -0.01 3.94 16 31 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 32 H 0.40 13.11 6.64 -92.71 -0.62 12.50 16 33 H 0.17 2.84 6.51 -2.91 -0.02 2.82 16 34 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 35 H 0.20 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.18 2.86 8.14 -2.40 -0.02 2.84 16 Total: -1.00 -69.47 320.40 3.99 -65.48 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.52 Total: 17.16 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 4.57 Total: 5.13 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -3.48 Total: -95.71 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.04 Total: -25.00 kcal Atomic # 9 Polarization: -10.63 SS G_CDS: 1.48 Total: -9.16 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -1.09 Total: -0.72 kcal Total: -69.47 3.99 -65.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183949571.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.455 kcal (2) G-P(sol) polarization free energy of solvation -69.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds