Wall clock time and date at job start Tue Mar 31 2020 11:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50703 * 109.47219 * 269.99493 * 3 2 1 5 5 C 1.33349 * 125.18629 * 89.72282 * 4 3 2 6 6 C 1.38468 * 114.92892 * 179.79820 * 5 4 3 7 7 C 1.33506 * 114.88327 * 0.49411 * 6 5 4 8 8 Cl 1.73598 * 125.20708 * 179.75779 * 7 6 5 9 9 S 1.75872 * 125.19119 * 270.02762 * 4 3 2 10 10 C 1.34784 * 119.99893 * 179.97438 * 2 1 3 11 11 O 1.21583 * 119.99855 * 179.72907 * 10 2 1 12 12 N 1.34771 * 119.99547 * 359.97438 * 10 2 1 13 13 C 1.46506 * 119.99515 * 179.97438 * 12 10 2 14 14 C 1.53002 * 109.47042 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47346 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47235 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00370 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99790 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99822 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00076 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47136 * 90.00205 * 20 18 16 22 22 H 1.48503 * 109.47010 * 210.00270 * 20 18 16 23 23 H 1.48500 * 109.46954 * 330.00103 * 20 18 16 24 24 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 25 25 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 26 26 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 27 27 H 1.08998 * 109.47416 * 29.99674 * 3 2 1 28 28 H 1.09008 * 109.47058 * 150.00274 * 3 2 1 29 29 H 1.08001 * 122.53293 * 359.97438 * 5 4 3 30 30 H 1.08004 * 122.55683 * 180.23000 * 6 5 4 31 31 H 0.96999 * 120.00409 * 0.02562 * 12 10 2 32 32 H 1.08996 * 109.47564 * 300.00635 * 13 12 10 33 33 H 1.09000 * 109.46872 * 60.00432 * 13 12 10 34 34 H 1.08996 * 109.47407 * 300.00667 * 14 13 12 35 35 H 1.09000 * 109.46986 * 60.00438 * 14 13 12 36 36 H 1.09004 * 109.47108 * 300.00289 * 15 14 13 37 37 H 1.09000 * 109.46870 * 60.00183 * 15 14 13 38 38 H 0.97002 * 119.99998 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 6 1.6307 2.4661 -2.1471 6 6 2.0740 2.7407 -3.4299 7 6 3.2487 2.1916 -3.7478 8 17 4.0482 2.3558 -5.2799 9 16 3.8622 1.2770 -2.3765 10 6 2.1389 -1.1673 0.0005 11 8 3.3547 -1.1673 -0.0045 12 7 1.4649 -2.3344 0.0016 13 6 2.1974 -3.6032 0.0016 14 6 1.2031 -4.7661 0.0022 15 6 1.9680 -6.0911 0.0029 16 6 0.9887 -7.2365 0.0029 17 1 -0.0731 -7.0392 0.0029 18 6 1.4483 -8.5365 0.0039 19 7 0.5936 -9.5360 0.0034 20 14 3.2848 -8.8778 0.0046 21 1 3.7711 -8.9673 1.4049 22 1 3.5501 -10.1609 -0.6945 23 1 3.9932 -7.7767 -0.6960 24 1 -0.3633 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1383 0.5138 29 1 0.6944 2.8433 -1.7629 30 1 1.5104 3.3490 -4.1218 31 1 0.4949 -2.3343 0.0016 32 1 2.8235 -3.6613 -0.8888 33 1 2.8247 -3.6605 0.8911 34 1 0.5767 -4.7081 0.8923 35 1 0.5762 -4.7085 -0.8876 36 1 2.5947 -6.1493 -0.8871 37 1 2.5947 -6.1484 0.8929 38 1 0.9169 -10.4506 0.0045 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264152830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:46 Heat of formation + Delta-G solvation = -4.023338 kcal Electronic energy + Delta-G solvation = -20937.277126 eV Core-core repulsion = 17546.555435 eV Total energy + Delta-G solvation = -3390.721691 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.24584 -38.35978 -36.97833 -35.91493 -35.31506 -33.36629 -31.70418 -30.63694 -27.49719 -27.32846 -25.55495 -23.63914 -22.56622 -20.63915 -20.07600 -19.54893 -18.04128 -17.86275 -16.81010 -16.41364 -16.12276 -15.65898 -14.77840 -14.53929 -14.25010 -13.99767 -13.78750 -13.75124 -13.39357 -13.25448 -13.10114 -12.74457 -12.67162 -12.08936 -11.95378 -11.89153 -11.77755 -11.32667 -11.05534 -10.89469 -10.86463 -10.29659 -10.02290 -9.83637 -9.69274 -9.23025 -9.13940 -8.91039 -8.77946 -8.65854 -8.55485 -6.06484 -4.05163 0.46159 0.86932 1.62027 1.95938 2.18214 2.72743 3.20251 3.31681 3.39295 3.43935 3.95303 4.42310 4.44649 4.75239 4.78176 4.92219 5.03364 5.20691 5.27792 5.31555 5.37049 5.53556 5.58329 5.68389 5.71995 5.97859 6.02907 6.17443 6.36667 6.46109 6.64921 6.80892 6.85190 7.23112 7.36618 7.75380 7.93699 8.49793 8.59694 8.97274 9.55878 11.06753 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.017431 B = 0.002544 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.980803 B =11004.099819 C =11871.213446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.634 5.634 3 C 0.204 3.796 4 C -0.194 4.194 5 C -0.124 4.124 6 C -0.124 4.124 7 C -0.161 4.161 8 Cl -0.019 7.019 9 S 0.200 5.800 10 C 0.702 3.298 11 O -0.586 6.586 12 N -0.739 5.739 13 C 0.132 3.868 14 C -0.113 4.113 15 C -0.011 4.011 16 C -0.522 4.522 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.395 0.605 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.019 0.981 37 H 0.015 0.985 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.868 29.537 -3.946 29.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.371 5.371 3 C 0.078 3.922 4 C -0.314 4.314 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.305 4.305 8 Cl 0.009 6.991 9 S 0.464 5.536 10 C 0.403 3.597 11 O -0.464 6.464 12 N -0.394 5.394 13 C 0.008 3.992 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.560 4.560 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.188 1.188 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.231 0.769 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.149 28.437 -3.819 28.864 hybrid contribution -0.941 0.508 -0.600 1.226 sum 2.208 28.945 -4.420 29.364 Atomic orbital electron populations 1.21749 0.79554 1.03263 1.01897 1.47076 1.06416 1.04495 1.79155 1.19668 0.98800 0.84582 0.89123 1.25194 0.99236 1.04771 1.02168 1.19912 1.01145 1.01245 0.93277 1.20139 0.95284 1.02647 0.97620 1.25540 1.00868 1.09632 0.94476 1.98367 1.78677 1.96637 1.25401 1.85058 1.20500 1.47211 1.00850 1.15962 0.85440 0.80414 0.77892 1.90910 1.11415 1.86188 1.57909 1.45482 1.09980 1.05035 1.78943 1.21537 0.95163 0.80586 1.01878 1.21703 0.97702 0.94022 1.01642 1.19497 0.96395 0.92266 0.96699 1.21093 0.94365 0.89437 1.51083 0.91032 1.25028 0.97761 0.96235 0.94458 1.69912 1.34252 0.99035 1.51032 0.86777 0.86106 0.77834 0.78601 1.20235 1.21380 1.18846 0.92283 0.90856 0.91184 0.88296 0.88426 0.83703 0.83674 0.76922 0.91925 0.91892 0.92177 0.92183 0.96276 0.96708 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.20 59.85 0.61 1.13 16 2 N -0.63 -6.46 2.86 -188.74 -0.54 -7.00 16 3 C 0.20 1.78 5.89 -5.19 -0.03 1.74 16 4 C -0.19 -1.82 6.09 -36.02 -0.22 -2.04 16 5 C -0.12 -0.97 10.05 -41.20 -0.41 -1.38 16 6 C -0.12 -1.06 10.13 -41.15 -0.42 -1.48 16 7 C -0.16 -1.63 7.10 29.08 0.21 -1.43 16 8 Cl -0.02 -0.19 29.29 -51.86 -1.52 -1.71 16 9 S 0.20 2.25 23.33 -107.50 -2.51 -0.26 16 10 C 0.70 10.06 8.28 -86.92 -0.72 9.34 16 11 O -0.59 -10.45 15.92 5.29 0.08 -10.37 16 12 N -0.74 -10.23 5.42 -65.22 -0.35 -10.59 16 13 C 0.13 2.19 5.67 -4.04 -0.02 2.17 16 14 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 15 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 16 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 17 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 18 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 19 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 20 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 26 H 0.07 0.47 6.36 -51.93 -0.33 0.14 16 27 H 0.10 0.53 8.07 -51.93 -0.42 0.11 16 28 H 0.10 0.99 7.42 -51.92 -0.39 0.61 16 29 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 30 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 31 H 0.40 4.45 6.20 -40.82 -0.25 4.20 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 37 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -33.45 350.88 -10.25 -43.70 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.12 Total: -1.50 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -1.69 Total: -7.69 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.12 Total: -44.56 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.51 Total: -0.26 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.52 Total: -1.71 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.45 -10.25 -43.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264152830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.676 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds