Wall clock time and date at job start Tue Mar 31 2020 11:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50703 * 109.47219 * 269.99493 * 3 2 1 5 5 C 1.33349 * 125.18629 * 89.72282 * 4 3 2 6 6 C 1.38468 * 114.92892 * 179.79820 * 5 4 3 7 7 C 1.33506 * 114.88327 * 0.49411 * 6 5 4 8 8 Cl 1.73598 * 125.20708 * 179.75779 * 7 6 5 9 9 S 1.75872 * 125.19119 * 270.02762 * 4 3 2 10 10 C 1.34784 * 119.99893 * 179.97438 * 2 1 3 11 11 O 1.21583 * 119.99855 * 179.72907 * 10 2 1 12 12 N 1.34771 * 119.99547 * 359.97438 * 10 2 1 13 13 C 1.46506 * 119.99515 * 179.97438 * 12 10 2 14 14 C 1.53002 * 109.47042 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47346 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47235 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00370 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99790 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99822 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00076 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47136 * 90.00205 * 20 18 16 22 22 H 1.48503 * 109.47010 * 210.00270 * 20 18 16 23 23 H 1.48500 * 109.46954 * 330.00103 * 20 18 16 24 24 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 25 25 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 26 26 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 27 27 H 1.08998 * 109.47416 * 29.99674 * 3 2 1 28 28 H 1.09008 * 109.47058 * 150.00274 * 3 2 1 29 29 H 1.08001 * 122.53293 * 359.97438 * 5 4 3 30 30 H 1.08004 * 122.55683 * 180.23000 * 6 5 4 31 31 H 0.96999 * 120.00409 * 0.02562 * 12 10 2 32 32 H 1.08996 * 109.47564 * 300.00635 * 13 12 10 33 33 H 1.09000 * 109.46872 * 60.00432 * 13 12 10 34 34 H 1.08996 * 109.47407 * 300.00667 * 14 13 12 35 35 H 1.09000 * 109.46986 * 60.00438 * 14 13 12 36 36 H 1.09004 * 109.47108 * 300.00289 * 15 14 13 37 37 H 1.09000 * 109.46870 * 60.00183 * 15 14 13 38 38 H 0.97002 * 119.99998 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 6 1.6307 2.4661 -2.1471 6 6 2.0740 2.7407 -3.4299 7 6 3.2487 2.1916 -3.7478 8 17 4.0482 2.3558 -5.2799 9 16 3.8622 1.2770 -2.3765 10 6 2.1389 -1.1673 0.0005 11 8 3.3547 -1.1673 -0.0045 12 7 1.4649 -2.3344 0.0016 13 6 2.1974 -3.6032 0.0016 14 6 1.2031 -4.7661 0.0022 15 6 1.9680 -6.0911 0.0029 16 6 0.9887 -7.2365 0.0029 17 1 -0.0731 -7.0392 0.0029 18 6 1.4483 -8.5365 0.0039 19 7 0.5936 -9.5360 0.0034 20 14 3.2848 -8.8778 0.0046 21 1 3.7711 -8.9673 1.4049 22 1 3.5501 -10.1609 -0.6945 23 1 3.9932 -7.7767 -0.6960 24 1 -0.3633 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1383 0.5138 29 1 0.6944 2.8433 -1.7629 30 1 1.5104 3.3490 -4.1218 31 1 0.4949 -2.3343 0.0016 32 1 2.8235 -3.6613 -0.8888 33 1 2.8247 -3.6605 0.8911 34 1 0.5767 -4.7081 0.8923 35 1 0.5762 -4.7085 -0.8876 36 1 2.5947 -6.1493 -0.8871 37 1 2.5947 -6.1484 0.8929 38 1 0.9169 -10.4506 0.0045 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264152830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:45 Heat of formation + Delta-G solvation = -24.806901 kcal Electronic energy + Delta-G solvation = -20938.178369 eV Core-core repulsion = 17546.555435 eV Total energy + Delta-G solvation = -3391.622934 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.24638 -39.07653 -37.75105 -37.10120 -36.39270 -35.16179 -33.35999 -31.58149 -28.94316 -28.10711 -26.50085 -24.70761 -23.86618 -22.20902 -21.04456 -20.42198 -19.15461 -18.70357 -18.62181 -17.46049 -16.99601 -16.58737 -16.34518 -15.89983 -15.38507 -15.14854 -14.76314 -14.72186 -14.48766 -14.28289 -13.93808 -13.80485 -13.68612 -13.53740 -13.27001 -12.75684 -12.68536 -12.65222 -12.49326 -12.01668 -11.90267 -11.77569 -11.60396 -11.58453 -11.32634 -11.21735 -10.75771 -10.20752 -9.71012 -9.57356 -9.51260 -8.29175 -6.32730 -0.24256 0.13652 0.92142 1.22867 1.36944 1.38856 1.48201 1.50648 1.87983 2.13719 2.36649 3.04442 3.06740 3.76585 4.07315 4.13327 4.22222 4.28493 4.34169 4.48580 4.51238 4.65944 4.76154 4.89530 4.90851 4.92181 4.99173 5.04642 5.06800 5.36033 5.42471 5.48831 5.54112 5.56555 5.65814 5.88573 6.27928 6.75114 6.95529 7.32113 7.54744 8.87198 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.017431 B = 0.002544 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.980803 B =11004.099819 C =11871.213446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.626 5.626 3 C 0.202 3.798 4 C -0.193 4.193 5 C -0.109 4.109 6 C -0.117 4.117 7 C -0.170 4.170 8 Cl -0.022 7.022 9 S 0.120 5.880 10 C 0.695 3.305 11 O -0.628 6.628 12 N -0.734 5.734 13 C 0.147 3.853 14 C -0.098 4.098 15 C -0.012 4.012 16 C -0.529 4.529 17 H 0.039 0.961 18 C 0.005 3.995 19 N -0.950 5.950 20 Si 0.946 3.054 21 H -0.267 1.267 22 H -0.285 1.285 23 H -0.249 1.249 24 H 0.075 0.925 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.143 0.857 28 H 0.076 0.924 29 H 0.185 0.815 30 H 0.169 0.831 31 H 0.409 0.591 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 31.946 -3.735 32.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.362 5.362 3 C 0.077 3.923 4 C -0.312 4.312 5 C -0.140 4.140 6 C -0.150 4.150 7 C -0.314 4.314 8 Cl 0.006 6.994 9 S 0.383 5.617 10 C 0.396 3.604 11 O -0.509 6.509 12 N -0.391 5.391 13 C 0.022 3.978 14 C -0.136 4.136 15 C -0.050 4.050 16 C -0.567 4.567 17 H 0.057 0.943 18 C -0.192 4.192 19 N -0.591 5.591 20 Si 0.769 3.231 21 H -0.192 1.192 22 H -0.211 1.211 23 H -0.173 1.173 24 H 0.094 0.906 25 H 0.120 0.880 26 H 0.086 0.914 27 H 0.161 0.839 28 H 0.094 0.906 29 H 0.202 0.798 30 H 0.186 0.814 31 H 0.247 0.753 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.267 30.899 -3.608 31.191 hybrid contribution -0.825 -0.153 -0.681 1.080 sum 1.442 30.746 -4.288 31.077 Atomic orbital electron populations 1.22045 0.76990 1.04640 1.03434 1.47140 1.07941 1.03497 1.77655 1.19885 0.98699 0.84768 0.88953 1.25249 0.98216 1.05481 1.02281 1.20303 1.01767 0.99517 0.92381 1.20543 0.94452 1.01644 0.98351 1.25590 1.01522 1.10267 0.94017 1.98361 1.78961 1.96649 1.25402 1.85345 1.23613 1.49333 1.03393 1.16181 0.85081 0.81411 0.77762 1.90886 1.13413 1.86927 1.59651 1.45219 1.10545 1.04176 1.79114 1.21119 0.94406 0.81252 1.00983 1.21461 0.97553 0.92491 1.02105 1.19459 0.95800 0.92960 0.96757 1.21458 0.93919 0.91194 1.50149 0.94292 1.25963 1.02829 0.96104 0.94259 1.70053 1.36665 0.99620 1.52752 0.85721 0.80075 0.78052 0.79216 1.19163 1.21054 1.17280 0.90644 0.87981 0.91377 0.83918 0.90567 0.79825 0.81363 0.75318 0.93143 0.92620 0.91579 0.91887 0.96273 0.96175 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.20 127.77 1.30 1.96 16 2 N -0.63 -11.20 2.86 -869.32 -2.48 -13.68 16 3 C 0.20 3.01 5.89 85.63 0.50 3.52 16 4 C -0.19 -3.21 6.09 24.58 0.15 -3.06 16 5 C -0.11 -1.28 10.05 21.22 0.21 -1.06 16 6 C -0.12 -1.68 10.13 21.25 0.22 -1.46 16 7 C -0.17 -3.29 7.10 66.75 0.47 -2.82 16 8 Cl -0.02 -0.42 29.29 -2.72 -0.08 -0.50 16 9 S 0.12 2.73 23.33 -56.49 -1.32 1.42 16 10 C 0.69 19.17 8.28 179.05 1.48 20.65 16 11 O -0.63 -22.54 15.92 -3.98 -0.06 -22.60 16 12 N -0.73 -19.33 5.42 -478.53 -2.59 -21.92 16 13 C 0.15 4.77 5.67 86.38 0.49 5.26 16 14 C -0.10 -3.55 5.27 30.59 0.16 -3.39 16 15 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 16 C -0.53 -30.04 9.66 25.60 0.25 -29.79 16 17 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 18 C 0.01 0.31 5.47 84.66 0.46 0.77 16 19 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 20 Si 0.95 44.65 27.47 68.60 1.88 46.53 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 23 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 24 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.10 0.41 8.07 -2.39 -0.02 0.39 16 26 H 0.07 0.69 6.36 -2.39 -0.02 0.67 16 27 H 0.14 0.88 8.07 -2.39 -0.02 0.86 16 28 H 0.08 1.51 7.42 -2.38 -0.02 1.49 16 29 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 30 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.41 8.37 6.20 -92.71 -0.58 7.80 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.02 0.88 7.20 -2.38 -0.02 0.86 16 37 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 38 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -74.93 350.88 1.91 -73.01 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 0.44 Total: 6.68 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 5.82 Total: -9.83 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -4.78 Total: -94.71 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.06 Total: -22.60 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.32 Total: 1.42 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.08 Total: -0.50 kcal Total: -74.93 1.91 -73.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264152830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.207 kcal (2) G-P(sol) polarization free energy of solvation -74.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds