Wall clock time and date at job start Tue Mar 31 2020 11:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35888 * 117.00239 * 2 1 4 4 C 1.38674 * 119.99719 * 0.02562 * 3 2 1 5 5 C 1.38680 * 120.00103 * 180.02562 * 4 3 2 6 6 O 1.35894 * 120.00444 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99621 * 359.88293 * 6 5 4 8 8 C 1.38678 * 119.99660 * 359.86646 * 5 4 3 9 9 C 1.38675 * 120.00192 * 0.09538 * 8 5 4 10 10 O 1.35893 * 119.99942 * 179.97438 * 9 8 5 11 11 S 1.52197 * 114.00005 * 89.99777 * 10 9 8 12 12 O 1.42101 * 104.27818 * 191.07051 * 11 10 9 13 13 O 1.42102 * 104.27944 * 318.92770 * 11 10 9 14 14 C 1.81401 * 104.44794 * 74.99970 * 11 10 9 15 15 C 1.53002 * 109.46751 * 179.97438 * 14 11 10 16 16 C 1.50706 * 109.46615 * 180.02562 * 15 14 11 17 17 H 1.07996 * 120.00193 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99739 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99935 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99727 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47075 * 90.00310 * 20 18 16 22 22 H 1.48502 * 109.46998 * 210.00097 * 20 18 16 23 23 H 1.48500 * 109.47577 * 330.00329 * 20 18 16 24 24 C 1.38673 * 119.99783 * 359.97438 * 9 8 5 25 25 H 1.09003 * 109.46892 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47363 * 300.00658 * 1 2 3 27 27 H 1.08997 * 109.47137 * 60.00556 * 1 2 3 28 28 H 1.07997 * 120.00286 * 359.97438 * 4 3 2 29 29 H 1.09005 * 109.47350 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.47612 * 300.00770 * 7 6 5 31 31 H 1.09006 * 109.47127 * 60.00846 * 7 6 5 32 32 H 1.08009 * 119.99644 * 180.36251 * 8 5 4 33 33 H 1.08997 * 109.47286 * 300.00034 * 14 11 10 34 34 H 1.09001 * 109.47225 * 60.00151 * 14 11 10 35 35 H 1.09000 * 109.47519 * 299.99642 * 15 14 11 36 36 H 1.08993 * 109.47251 * 60.00346 * 15 14 11 37 37 H 0.96999 * 120.00011 * 179.97438 * 19 18 16 38 38 H 1.08001 * 119.99546 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2906 2.3738 0.0005 5 6 1.9202 3.6094 0.0000 6 8 1.1801 4.7492 0.0000 7 6 -0.2410 4.5998 -0.0020 8 6 3.3051 3.6820 0.0017 9 6 4.0604 2.5189 0.0020 10 8 5.4174 2.5901 0.0032 11 16 6.0345 2.6221 1.3941 12 8 7.3961 2.9583 1.1658 13 8 5.1817 3.4832 2.1361 14 6 5.8918 0.9153 1.9919 15 6 6.4855 0.8165 3.3986 16 6 6.3675 -0.6016 3.8949 17 1 5.9149 -1.3568 3.2695 18 6 6.8375 -0.9348 5.1476 19 7 7.3892 -0.0153 5.9090 20 14 6.6907 -2.6924 5.7631 21 1 7.9049 -3.4551 5.3771 22 1 6.5574 -2.6893 7.2422 23 1 5.4930 -3.3299 5.1595 24 6 3.4308 1.2834 0.0011 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 0.2122 2.3173 0.0005 29 1 -0.7099 5.5838 -0.0023 30 1 -0.5476 4.0514 -0.8928 31 1 -0.5499 4.0501 0.8872 32 1 3.7954 4.6443 0.0072 33 1 4.8412 0.6266 2.0193 34 1 6.4344 0.2489 1.3213 35 1 7.5362 1.1050 3.3707 36 1 5.9433 1.4829 4.0694 37 1 7.7195 -0.2497 6.7904 38 1 4.0190 0.3776 0.0008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264729522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:51 Heat of formation + Delta-G solvation = -152.649812 kcal Electronic energy + Delta-G solvation = -24708.767452 eV Core-core repulsion = 20838.598918 eV Total energy + Delta-G solvation = -3870.168534 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.090 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32326 -39.93056 -39.13697 -36.75742 -36.10347 -35.61724 -33.92046 -31.29118 -30.65927 -30.04952 -28.23654 -26.99099 -25.66672 -23.36153 -22.90473 -21.66354 -20.38886 -18.88414 -17.77725 -17.62287 -16.90290 -16.86807 -16.42682 -16.30190 -16.20630 -15.79373 -15.56982 -15.02535 -14.77380 -14.55197 -14.10999 -13.47652 -13.13843 -12.88690 -12.78399 -12.55594 -12.27858 -12.23467 -11.92713 -11.80860 -11.73752 -11.68733 -11.61325 -11.44847 -11.07784 -10.97520 -10.72865 -10.42120 -10.36960 -9.72686 -9.21616 -8.89454 -8.49237 -8.34011 -6.11313 -4.16633 0.30505 1.08794 1.14324 2.27876 2.91831 3.02748 3.27386 3.31460 3.33460 3.36361 4.07843 4.35139 4.38281 4.50335 4.57152 4.66417 4.79432 4.82134 4.83155 4.84919 4.88690 5.10874 5.16229 5.23580 5.25216 5.27502 5.63765 5.69739 5.84556 5.86450 6.01014 6.39096 6.46387 6.80733 7.12139 7.29867 7.35821 7.81896 8.18069 8.86506 9.47934 10.99794 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.004279 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.034749 B = 6541.469237 C = 7780.934810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.186 3.814 4 C -0.288 4.288 5 C 0.183 3.817 6 O -0.306 6.306 7 C 0.025 3.975 8 C -0.163 4.163 9 C 0.160 3.840 10 O -0.671 6.671 11 S 2.571 3.429 12 O -0.933 6.933 13 O -0.955 6.955 14 C -0.611 4.611 15 C 0.031 3.969 16 C -0.520 4.520 17 H 0.062 0.938 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.200 4.200 25 H 0.105 0.895 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.143 0.857 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.150 0.850 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.035 0.965 36 H 0.036 0.964 37 H 0.265 0.735 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.978 4.420 -14.289 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.217 6.217 3 C 0.140 3.860 4 C -0.308 4.308 5 C 0.137 3.863 6 O -0.219 6.219 7 C -0.070 4.070 8 C -0.184 4.184 9 C 0.117 3.883 10 O -0.629 6.629 11 S 2.672 3.328 12 O -0.931 6.931 13 O -0.953 6.953 14 C -0.742 4.742 15 C -0.008 4.008 16 C -0.559 4.559 17 H 0.081 0.919 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.221 4.221 25 H 0.123 0.877 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.161 0.839 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.168 0.832 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -17.463 5.210 -14.349 23.195 hybrid contribution -0.411 -1.597 0.572 1.746 sum -17.874 3.612 -13.777 22.855 Atomic orbital electron populations 1.23148 0.77907 1.04500 1.01451 1.86136 1.21728 1.25878 1.87966 1.18128 0.90906 0.84069 0.92902 1.21378 1.00999 0.91704 1.16740 1.18197 0.90195 0.84816 0.93089 1.86122 1.19299 1.28396 1.88053 1.23142 0.78089 1.04285 1.01501 1.20270 0.90994 0.99103 1.07994 1.17023 0.77128 0.92796 1.01312 1.85759 1.25332 1.92427 1.59344 1.06199 0.74570 0.79403 0.72649 1.93592 1.33811 1.83395 1.82303 1.93610 1.66529 1.64122 1.71051 1.30722 1.10967 1.20232 1.12281 1.18959 0.96582 1.00187 0.85069 1.21003 1.40409 0.93531 1.00955 0.91933 1.25060 0.94933 0.97775 0.96671 1.69953 1.39390 1.33219 1.10287 0.86464 0.78576 0.84235 0.77984 1.20449 1.21035 1.19744 1.20389 0.92736 0.97758 1.11223 0.87708 0.92256 0.92525 0.83909 0.87788 0.92511 0.92267 0.83244 0.85669 0.85440 0.94638 0.94616 0.92529 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.30 -3.46 10.49 -19.39 -0.20 -3.67 16 3 C 0.19 2.34 6.68 -39.26 -0.26 2.08 16 4 C -0.29 -3.16 8.02 -39.26 -0.31 -3.47 16 5 C 0.18 2.33 6.68 -39.26 -0.26 2.07 16 6 O -0.31 -3.41 10.49 -19.41 -0.20 -3.62 16 7 C 0.02 0.16 9.81 101.05 0.99 1.15 16 8 C -0.16 -2.42 8.98 -39.26 -0.35 -2.78 16 9 C 0.16 2.51 4.79 -39.26 -0.19 2.32 16 10 O -0.67 -11.34 10.05 -51.73 -0.52 -11.86 16 11 S 2.57 50.16 5.17 -107.50 -0.56 49.60 16 12 O -0.93 -20.78 18.09 -67.04 -1.21 -22.00 16 13 O -0.95 -20.14 16.26 -67.04 -1.09 -21.23 16 14 C -0.61 -12.15 5.40 37.16 0.20 -11.95 16 15 C 0.03 0.79 4.98 -27.88 -0.14 0.65 16 16 C -0.52 -14.42 9.11 -34.43 -0.31 -14.73 16 17 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 20 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 C -0.20 -2.84 8.39 -39.26 -0.33 -3.17 16 25 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 27 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 28 H 0.14 1.06 4.52 -52.49 -0.24 0.83 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 31 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 32 H 0.15 2.14 8.06 -52.48 -0.42 1.71 16 33 H 0.13 2.26 6.60 -51.93 -0.34 1.91 16 34 H 0.13 2.26 8.14 -51.92 -0.42 1.83 16 35 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.15 1.99 7.49 -52.49 -0.39 1.59 16 LS Contribution 336.88 15.07 5.08 5.08 Total: -1.00 -35.85 336.88 -7.71 -43.56 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -4.64 Total: -1.21 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: -0.08 Total: -25.12 kcal Atomic # 7 Polarization: -26.50 SS G_CDS: 0.74 Total: -25.77 kcal Atomic # 8 Polarization: -59.15 SS G_CDS: -3.23 Total: -62.37 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 50.16 SS G_CDS: -0.56 Total: 49.60 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.85 -7.71 -43.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264729522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.091 kcal (2) G-P(sol) polarization free energy of solvation -35.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds