Wall clock time and date at job start Tue Mar 31 2020 11:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35888 * 117.00239 * 2 1 4 4 C 1.38674 * 119.99719 * 0.02562 * 3 2 1 5 5 C 1.38680 * 120.00103 * 180.02562 * 4 3 2 6 6 O 1.35894 * 120.00444 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99621 * 359.88293 * 6 5 4 8 8 C 1.38678 * 119.99660 * 359.86646 * 5 4 3 9 9 C 1.38675 * 120.00192 * 0.09538 * 8 5 4 10 10 O 1.35893 * 119.99942 * 179.97438 * 9 8 5 11 11 S 1.52197 * 114.00005 * 89.99777 * 10 9 8 12 12 O 1.42101 * 104.27818 * 191.07051 * 11 10 9 13 13 O 1.42102 * 104.27944 * 318.92770 * 11 10 9 14 14 C 1.81401 * 104.44794 * 74.99970 * 11 10 9 15 15 C 1.53002 * 109.46751 * 179.97438 * 14 11 10 16 16 C 1.50706 * 109.46615 * 180.02562 * 15 14 11 17 17 H 1.07996 * 120.00193 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99739 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99935 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99727 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47075 * 90.00310 * 20 18 16 22 22 H 1.48502 * 109.46998 * 210.00097 * 20 18 16 23 23 H 1.48500 * 109.47577 * 330.00329 * 20 18 16 24 24 C 1.38673 * 119.99783 * 359.97438 * 9 8 5 25 25 H 1.09003 * 109.46892 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47363 * 300.00658 * 1 2 3 27 27 H 1.08997 * 109.47137 * 60.00556 * 1 2 3 28 28 H 1.07997 * 120.00286 * 359.97438 * 4 3 2 29 29 H 1.09005 * 109.47350 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.47612 * 300.00770 * 7 6 5 31 31 H 1.09006 * 109.47127 * 60.00846 * 7 6 5 32 32 H 1.08009 * 119.99644 * 180.36251 * 8 5 4 33 33 H 1.08997 * 109.47286 * 300.00034 * 14 11 10 34 34 H 1.09001 * 109.47225 * 60.00151 * 14 11 10 35 35 H 1.09000 * 109.47519 * 299.99642 * 15 14 11 36 36 H 1.08993 * 109.47251 * 60.00346 * 15 14 11 37 37 H 0.96999 * 120.00011 * 179.97438 * 19 18 16 38 38 H 1.08001 * 119.99546 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2906 2.3738 0.0005 5 6 1.9202 3.6094 0.0000 6 8 1.1801 4.7492 0.0000 7 6 -0.2410 4.5998 -0.0020 8 6 3.3051 3.6820 0.0017 9 6 4.0604 2.5189 0.0020 10 8 5.4174 2.5901 0.0032 11 16 6.0345 2.6221 1.3941 12 8 7.3961 2.9583 1.1658 13 8 5.1817 3.4832 2.1361 14 6 5.8918 0.9153 1.9919 15 6 6.4855 0.8165 3.3986 16 6 6.3675 -0.6016 3.8949 17 1 5.9149 -1.3568 3.2695 18 6 6.8375 -0.9348 5.1476 19 7 7.3892 -0.0153 5.9090 20 14 6.6907 -2.6924 5.7631 21 1 7.9049 -3.4551 5.3771 22 1 6.5574 -2.6893 7.2422 23 1 5.4930 -3.3299 5.1595 24 6 3.4308 1.2834 0.0011 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 0.2122 2.3173 0.0005 29 1 -0.7099 5.5838 -0.0023 30 1 -0.5476 4.0514 -0.8928 31 1 -0.5499 4.0501 0.8872 32 1 3.7954 4.6443 0.0072 33 1 4.8412 0.6266 2.0193 34 1 6.4344 0.2489 1.3213 35 1 7.5362 1.1050 3.3707 36 1 5.9433 1.4829 4.0694 37 1 7.7195 -0.2497 6.7904 38 1 4.0190 0.3776 0.0008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264729522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:51 Heat of formation + Delta-G solvation = -179.204341 kcal Electronic energy + Delta-G solvation = -24709.918943 eV Core-core repulsion = 20838.598918 eV Total energy + Delta-G solvation = -3871.320025 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.090 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.43247 -40.98939 -39.92830 -38.40302 -37.32477 -37.03520 -35.92960 -33.23102 -31.60121 -31.04805 -28.83460 -27.81669 -27.46579 -24.59128 -23.97064 -23.37174 -21.56190 -20.06317 -19.36083 -18.77389 -18.37668 -18.05828 -17.77577 -17.31232 -16.97771 -16.93137 -16.54428 -16.45632 -16.29634 -15.70926 -15.24120 -15.18372 -14.48931 -14.26464 -13.81822 -13.76224 -13.56176 -13.44461 -13.41004 -13.28255 -13.22430 -12.93996 -12.82095 -12.51329 -12.37690 -12.28863 -12.24870 -12.15955 -11.76290 -11.58896 -11.11614 -10.63422 -9.88289 -9.30642 -8.24872 -6.38669 -1.12868 -0.07636 0.14523 0.95560 1.42381 1.44297 1.55432 2.12370 2.17200 2.31812 2.38736 2.53655 2.89861 3.08921 3.59132 3.71765 3.78948 3.80105 3.89942 3.96970 4.21565 4.25443 4.29787 4.39891 4.41023 4.42594 4.68706 4.73955 4.77318 4.89036 4.91198 4.96374 5.23988 5.24980 5.32433 5.68955 6.04520 6.05986 6.30975 6.74058 7.31219 8.87582 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.004279 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.034749 B = 6541.469237 C = 7780.934810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.319 6.319 3 C 0.187 3.813 4 C -0.271 4.271 5 C 0.184 3.816 6 O -0.322 6.322 7 C 0.010 3.990 8 C -0.188 4.188 9 C 0.127 3.873 10 O -0.661 6.661 11 S 2.597 3.403 12 O -0.967 6.967 13 O -0.975 6.975 14 C -0.605 4.605 15 C 0.024 3.976 16 C -0.539 4.539 17 H 0.077 0.923 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.974 3.026 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.257 1.257 24 C -0.214 4.214 25 H 0.123 0.877 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.183 0.817 29 H 0.124 0.876 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.011 0.989 36 H 0.013 0.987 37 H 0.268 0.732 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.057 2.758 -15.214 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.232 6.232 3 C 0.140 3.860 4 C -0.291 4.291 5 C 0.137 3.863 6 O -0.235 6.235 7 C -0.084 4.084 8 C -0.209 4.209 9 C 0.085 3.915 10 O -0.620 6.620 11 S 2.698 3.302 12 O -0.965 6.965 13 O -0.974 6.974 14 C -0.736 4.736 15 C -0.015 4.015 16 C -0.578 4.578 17 H 0.095 0.905 18 C -0.200 4.200 19 N -0.573 5.573 20 Si 0.798 3.202 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.181 1.181 24 C -0.235 4.235 25 H 0.141 0.859 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.200 0.800 29 H 0.142 0.858 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.169 0.831 35 H 0.029 0.971 36 H 0.031 0.969 37 H 0.076 0.924 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -20.556 3.546 -15.282 25.858 hybrid contribution 0.314 -1.024 0.770 1.319 sum -20.243 2.521 -14.512 25.034 Atomic orbital electron populations 1.23566 0.75378 1.06424 1.03063 1.86132 1.24355 1.25170 1.87564 1.18204 0.90524 0.85162 0.92151 1.21720 1.02839 0.90282 1.14236 1.18237 0.89629 0.86053 0.92407 1.86120 1.21777 1.27989 1.87651 1.23569 0.75416 1.06334 1.03068 1.20420 0.92528 0.98680 1.09247 1.17332 0.76173 0.93993 1.03978 1.85705 1.26733 1.92350 1.57164 1.05323 0.73568 0.78723 0.72589 1.93539 1.35957 1.83853 1.83200 1.93566 1.66827 1.64765 1.72202 1.30578 1.12191 1.21532 1.09262 1.18820 0.95263 0.99268 0.88112 1.21491 1.40205 0.94570 1.01488 0.90514 1.26095 0.94395 1.02584 0.96972 1.70098 1.40578 1.35793 1.10819 0.85307 0.79217 0.78398 0.77304 1.19677 1.20786 1.18096 1.20555 0.94021 0.97304 1.11628 0.85881 0.91104 0.90329 0.80035 0.85775 0.90364 0.91106 0.83976 0.83570 0.83102 0.97101 0.96910 0.92360 0.82032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -6.34 10.49 -92.29 -0.97 -7.31 16 3 C 0.19 4.28 6.68 22.48 0.15 4.43 16 4 C -0.27 -5.16 8.02 22.48 0.18 -4.98 16 5 C 0.18 4.40 6.68 22.48 0.15 4.55 16 6 O -0.32 -6.60 10.49 -92.36 -0.97 -7.57 16 7 C 0.01 0.09 9.81 113.37 1.11 1.20 16 8 C -0.19 -5.63 8.98 22.48 0.20 -5.43 16 9 C 0.13 4.01 4.79 22.48 0.11 4.12 16 10 O -0.66 -22.82 10.05 -61.44 -0.62 -23.44 16 11 S 2.60 104.37 5.17 -56.49 -0.29 104.08 16 12 O -0.97 -44.72 18.09 -118.57 -2.15 -46.87 16 13 O -0.98 -42.59 16.26 -118.57 -1.93 -44.52 16 14 C -0.61 -24.24 5.40 71.98 0.39 -23.85 16 15 C 0.02 1.28 4.98 29.85 0.15 1.42 16 16 C -0.54 -29.98 9.11 25.60 0.23 -29.75 16 17 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 18 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 19 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 20 Si 0.97 43.26 29.54 68.60 2.03 45.28 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 24 C -0.21 -5.88 8.39 22.48 0.19 -5.69 16 25 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 0.52 7.66 -2.39 -0.02 0.51 16 27 H 0.08 0.41 7.66 -2.39 -0.02 0.39 16 28 H 0.18 1.86 4.52 -2.91 -0.01 1.85 16 29 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.08 0.40 7.66 -2.39 -0.02 0.39 16 31 H 0.07 0.51 7.65 -2.38 -0.02 0.49 16 32 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 33 H 0.15 5.19 6.60 -2.39 -0.02 5.18 16 34 H 0.15 5.26 8.14 -2.39 -0.02 5.24 16 35 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.16 4.00 7.49 -2.91 -0.02 3.98 16 Total: -1.00 -79.46 336.88 0.91 -78.55 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.08 Total: 10.70 kcal Atomic # 6 Polarization: -56.85 SS G_CDS: 4.44 Total: -52.41 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.28 Total: -56.51 kcal Atomic # 8 Polarization: -123.07 SS G_CDS: -6.63 Total: -129.70 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 104.37 SS G_CDS: -0.29 Total: 104.08 kcal Total: -79.46 0.91 -78.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264729522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.653 kcal (2) G-P(sol) polarization free energy of solvation -79.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds