Wall clock time and date at job start Tue Mar 31 2020 11:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47276 * 2 1 4 4 C 1.46499 * 120.00136 * 269.99459 * 3 2 1 5 5 C 1.50697 * 109.47293 * 270.00491 * 4 3 2 6 6 C 1.33351 * 125.19336 * 89.71773 * 5 4 3 7 7 C 1.38468 * 114.93036 * 179.79382 * 6 5 4 8 8 C 1.33502 * 114.88393 * 0.50092 * 7 6 5 9 9 Cl 1.73598 * 125.20752 * 179.75934 * 8 7 6 10 10 S 1.75882 * 109.58344 * 359.73062 * 8 7 6 11 11 C 1.34784 * 119.99971 * 89.99654 * 3 2 1 12 12 O 1.21588 * 119.99858 * 179.97438 * 11 3 2 13 13 N 1.34773 * 119.99935 * 359.72710 * 11 3 2 14 14 C 1.46496 * 119.99973 * 180.02562 * 13 11 3 15 15 C 1.53005 * 109.47401 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47134 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00332 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99857 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99888 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99895 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47213 * 90.00589 * 20 18 16 22 22 H 1.48504 * 109.47159 * 210.00248 * 20 18 16 23 23 H 1.48502 * 109.47154 * 330.00339 * 20 18 16 24 24 H 1.08998 * 109.47074 * 300.00425 * 1 2 3 25 25 H 1.09007 * 109.46853 * 59.99785 * 1 2 3 26 26 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47074 * 239.99575 * 2 1 3 28 28 H 1.09008 * 109.46412 * 119.99581 * 2 1 3 29 29 H 1.08997 * 109.46865 * 30.00228 * 4 3 2 30 30 H 1.08998 * 109.47058 * 149.99741 * 4 3 2 31 31 H 1.08002 * 122.53215 * 359.97438 * 6 5 4 32 32 H 1.08000 * 122.55892 * 180.23349 * 7 6 5 33 33 H 0.97004 * 120.00018 * 359.97438 * 13 11 3 34 34 H 1.09007 * 109.47081 * 299.99672 * 14 13 11 35 35 H 1.08997 * 109.47795 * 59.99548 * 14 13 11 36 36 H 1.09002 * 109.46321 * 299.99746 * 15 14 13 37 37 H 1.08993 * 109.47232 * 59.99541 * 15 14 13 38 38 H 0.96995 * 119.99958 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 6 4.0980 0.8213 -2.4660 7 6 5.4551 0.8117 -2.7407 8 6 6.1465 1.8131 -2.1916 9 17 7.8575 2.0562 -2.3558 10 16 5.0582 2.8489 -1.2770 11 6 2.2429 2.0166 1.1673 12 8 2.6487 3.1628 1.1672 13 7 2.0130 1.3831 2.3344 14 6 2.2566 2.0739 3.6031 15 6 1.9181 1.1391 4.7661 16 6 2.1693 1.8495 6.0711 17 1 2.5342 2.8660 6.0712 18 6 1.9331 1.2018 7.2652 19 7 1.4892 -0.0362 7.2652 20 14 2.2452 2.0822 8.8829 21 1 1.0103 2.7890 9.3081 22 1 2.6300 1.0910 9.9197 23 1 3.3433 3.0663 8.7071 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 1.5819 1.6877 -2.0283 30 1 2.0957 3.1410 -1.1384 31 1 3.4236 0.0667 -2.8432 32 1 5.9196 0.0497 -3.3489 33 1 1.6855 0.4701 2.3344 34 1 3.3056 2.3641 3.6633 35 1 1.6297 2.9639 3.6586 36 1 0.8690 0.8493 4.7057 37 1 2.5447 0.2489 4.7109 38 1 1.3234 -0.4919 8.1052 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273037805.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:04 Heat of formation + Delta-G solvation = -7.573333 kcal Electronic energy + Delta-G solvation = -21384.522608 eV Core-core repulsion = 17993.646978 eV Total energy + Delta-G solvation = -3390.875630 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.05616 -38.20076 -36.85429 -35.86016 -34.92096 -32.90675 -31.68653 -30.01743 -29.06405 -26.23681 -24.61960 -23.47212 -23.12337 -21.03530 -19.86889 -19.49211 -17.89196 -17.55559 -16.58864 -16.14791 -15.86923 -15.24900 -14.52825 -14.32234 -14.09169 -13.99083 -13.74829 -13.60071 -13.41112 -13.15499 -12.93942 -12.61930 -12.28330 -12.10318 -11.83690 -11.60993 -11.35429 -11.21661 -11.08259 -11.02821 -10.73550 -10.62474 -10.32001 -9.92492 -9.56171 -9.26695 -8.90517 -8.73380 -8.64194 -8.47306 -8.23760 -6.08872 -4.11345 0.60140 0.99981 1.75880 2.07931 2.33312 2.98338 3.30100 3.36277 3.40939 3.50775 4.23857 4.45005 4.57935 4.79318 4.94528 5.03344 5.10339 5.21181 5.28388 5.30772 5.46765 5.61106 5.69152 5.71272 5.85829 6.08103 6.11558 6.25970 6.40143 6.51021 6.77487 6.99001 7.10244 7.55536 7.63274 7.90226 8.23783 8.35289 8.91070 8.96630 9.53415 11.02828 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.015040 B = 0.002985 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.293079 B = 9377.614147 C =10556.283254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 N -0.631 5.631 4 C 0.204 3.796 5 C -0.189 4.189 6 C -0.127 4.127 7 C -0.124 4.124 8 C -0.163 4.163 9 Cl -0.022 7.022 10 S 0.201 5.799 11 C 0.700 3.300 12 O -0.591 6.591 13 N -0.736 5.736 14 C 0.139 3.861 15 C 0.014 3.986 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.393 0.607 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.233 -1.377 -23.601 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 N -0.368 5.368 4 C 0.078 3.922 5 C -0.309 4.309 6 C -0.159 4.159 7 C -0.156 4.156 8 C -0.307 4.307 9 Cl 0.007 6.993 10 S 0.465 5.535 11 C 0.402 3.598 12 O -0.470 6.470 13 N -0.390 5.390 14 C 0.016 3.984 15 C -0.024 4.024 16 C -0.559 4.559 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.228 0.772 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.834 0.691 -22.562 22.896 hybrid contribution 0.075 -1.546 0.083 1.550 sum 3.909 -0.854 -22.480 22.833 Atomic orbital electron populations 1.22241 0.95703 1.02393 1.02860 1.21491 0.94463 0.82586 1.03181 1.47247 1.70705 1.14476 1.04402 1.19621 0.88204 0.99437 0.84928 1.25239 1.00718 1.00611 1.04365 1.19898 0.94984 0.99478 1.01492 1.20119 0.93715 0.99149 1.02649 1.25528 0.90564 1.04827 1.09789 1.98359 1.07969 1.96326 1.96663 1.85068 0.95351 1.25980 1.47115 1.16032 0.78726 0.84608 0.80465 1.90882 1.53126 1.16706 1.86241 1.45685 1.70375 1.17684 1.05280 1.21605 1.00124 0.96206 0.80434 1.19314 0.97312 0.94652 0.91106 1.21048 1.44604 0.99883 0.90340 0.92220 1.24991 0.95003 0.94894 0.99391 1.69954 1.45418 1.11146 1.26842 0.86516 0.78683 0.79380 0.83002 1.20573 1.21188 1.19697 0.91865 0.92371 0.91395 0.90354 0.90455 0.88557 0.88553 0.83767 0.83782 0.77194 0.92770 0.92745 0.96031 0.96053 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.24 37.16 0.38 -1.11 16 2 C 0.11 1.00 5.89 -4.04 -0.02 0.98 16 3 N -0.63 -7.88 2.46 -180.80 -0.44 -8.33 16 4 C 0.20 2.15 5.90 -5.20 -0.03 2.12 16 5 C -0.19 -2.08 6.09 -36.02 -0.22 -2.29 16 6 C -0.13 -1.17 10.05 -41.20 -0.41 -1.59 16 7 C -0.12 -1.21 10.13 -41.15 -0.42 -1.63 16 8 C -0.16 -1.85 7.10 29.08 0.21 -1.64 16 9 Cl -0.02 -0.23 29.29 -51.86 -1.52 -1.75 16 10 S 0.20 2.55 23.33 -107.50 -2.51 0.04 16 11 C 0.70 12.01 8.28 -86.91 -0.72 11.29 16 12 O -0.59 -12.08 15.92 5.29 0.08 -11.99 16 13 N -0.74 -13.06 5.42 -65.22 -0.35 -13.42 16 14 C 0.14 2.99 5.61 -4.04 -0.02 2.97 16 15 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 16 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 17 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 20 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 28 H 0.08 0.78 6.37 -51.92 -0.33 0.45 16 29 H 0.10 0.70 8.07 -51.93 -0.42 0.28 16 30 H 0.10 1.16 7.42 -51.93 -0.39 0.77 16 31 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.39 6.16 6.21 -40.82 -0.25 5.90 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 LS Contribution 354.80 15.07 5.35 5.35 Total: -1.00 -31.78 354.80 -10.65 -42.43 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.15 Total: 0.52 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.81 Total: -3.90 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.06 Total: -47.08 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.51 Total: 0.04 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.52 Total: -1.75 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.78 -10.65 -42.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273037805.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.852 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds