Wall clock time and date at job start Tue Mar 31 2020 11:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00097 * 2 1 4 4 H 1.48497 * 109.47332 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47261 * 300.00270 * 3 2 1 6 6 H 1.48499 * 109.46950 * 59.99742 * 3 2 1 7 7 C 1.37878 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99897 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99739 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46962 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47066 * 180.02562 * 10 9 7 12 12 C 1.34772 * 119.99881 * 180.02562 * 11 10 9 13 13 O 1.21586 * 120.00064 * 359.97438 * 12 11 10 14 14 N 1.34783 * 120.00091 * 180.02562 * 12 11 10 15 15 C 1.39940 * 120.00046 * 185.31483 * 14 12 11 16 16 C 1.38958 * 120.03117 * 213.29108 * 15 14 12 17 17 C 1.38159 * 120.09139 * 180.02562 * 16 15 14 18 18 C 1.38149 * 120.14910 * 359.68370 * 17 16 15 19 19 C 1.39004 * 120.05674 * 0.59387 * 18 17 16 20 20 S 1.76205 * 120.04188 * 179.69876 * 19 18 17 21 21 C 1.81394 * 103.00024 * 359.72747 * 20 19 18 22 22 F 1.39902 * 109.47274 * 60.00196 * 21 20 19 23 23 F 1.39903 * 109.47267 * 299.99904 * 21 20 19 24 24 C 1.38695 * 120.02945 * 33.31189 * 15 14 12 25 25 H 0.97005 * 119.99963 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47071 * 60.00069 * 9 7 2 27 27 H 1.08994 * 109.47150 * 300.00031 * 9 7 2 28 28 H 1.08997 * 109.46657 * 59.99911 * 10 9 7 29 29 H 1.09003 * 109.46836 * 300.00400 * 10 9 7 30 30 H 0.96994 * 120.00131 * 0.02562 * 11 10 9 31 31 H 0.96996 * 119.99892 * 5.31340 * 14 12 11 32 32 H 1.08003 * 119.95609 * 0.02906 * 16 15 14 33 33 H 1.08004 * 119.92162 * 180.02562 * 17 16 15 34 34 H 1.07999 * 119.96880 * 180.29788 * 18 17 16 35 35 H 1.09000 * 109.47025 * 180.02562 * 21 20 19 36 36 H 1.07989 * 120.07390 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 7 1.5127 -4.9308 -0.0024 12 6 2.1866 -6.0979 -0.0031 13 8 3.4025 -6.0979 -0.0036 14 7 1.5127 -7.2652 -0.0042 15 6 2.2079 -8.4746 0.1074 16 6 1.7375 -9.6096 -0.5418 17 6 2.4225 -10.8043 -0.4321 18 6 3.5807 -10.8737 0.3178 19 6 4.0536 -9.7436 0.9746 20 16 5.5265 -9.8346 1.9375 21 6 6.0229 -11.5703 1.7611 22 9 6.2453 -11.8568 0.4099 23 9 5.0075 -12.3980 2.2522 24 6 3.3667 -8.5416 0.8666 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5566 -0.8903 27 1 0.6247 -2.5570 0.8896 28 1 2.8726 -3.6047 0.8877 29 1 2.8713 -3.6039 -0.8923 30 1 0.5428 -4.9308 -0.0024 31 1 0.5459 -7.2669 -0.0823 32 1 0.8352 -9.5576 -1.1332 33 1 2.0548 -11.6847 -0.9382 34 1 4.1165 -11.8081 0.3977 35 1 6.9387 -11.7455 2.3255 36 1 3.7337 -7.6611 1.3727 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273267787.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:04 Heat of formation + Delta-G solvation = -96.787611 kcal Electronic energy + Delta-G solvation = -22679.001251 eV Core-core repulsion = 18732.460319 eV Total energy + Delta-G solvation = -3946.540932 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.70107 -47.69101 -40.54818 -38.66845 -35.24209 -34.57970 -32.90697 -31.24340 -30.35331 -28.93676 -27.37248 -24.90950 -23.42177 -22.80218 -21.07474 -20.67926 -19.24438 -18.34600 -18.17123 -17.89111 -17.63896 -16.42382 -16.27131 -15.65517 -15.45115 -14.87146 -14.59873 -14.55345 -14.44059 -14.01976 -13.96035 -13.75549 -13.67141 -13.36058 -13.04202 -12.84097 -12.32108 -11.94667 -11.42340 -11.23818 -11.10679 -10.84846 -10.69592 -10.64806 -10.38413 -10.03924 -9.91966 -9.63131 -9.29684 -8.69439 -8.45636 -8.24539 -7.94337 -6.12734 -4.15530 0.40340 0.93279 1.19140 1.53549 2.74847 3.20163 3.26827 3.28969 3.34668 3.39962 3.64350 3.88693 3.96486 4.32096 4.46950 4.66746 4.86381 4.94473 5.24746 5.26645 5.28303 5.58781 5.94394 6.08525 6.14439 6.23122 6.27087 6.30904 6.68439 6.81632 6.83759 7.02397 7.49949 7.56940 7.85925 8.11884 8.26472 8.72046 8.90806 9.49638 10.98932 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.027184 B = 0.002272 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.775748 B =12323.384679 C =13074.634134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.013 3.987 10 C 0.138 3.862 11 N -0.730 5.730 12 C 0.695 3.305 13 O -0.577 6.577 14 N -0.692 5.692 15 C 0.195 3.805 16 C -0.147 4.147 17 C -0.080 4.080 18 C -0.146 4.146 19 C -0.076 4.076 20 S -0.085 6.085 21 C 0.268 3.732 22 F -0.181 7.181 23 F -0.182 7.182 24 C -0.093 4.093 25 H 0.262 0.738 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.396 0.604 31 H 0.408 0.592 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.156 0.844 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.334 -26.194 2.624 26.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.025 4.025 10 C 0.016 3.984 11 N -0.383 5.383 12 C 0.396 3.604 13 O -0.454 6.454 14 N -0.339 5.339 15 C 0.097 3.903 16 C -0.170 4.170 17 C -0.100 4.100 18 C -0.170 4.170 19 C -0.189 4.189 20 S 0.152 5.848 21 C 0.105 3.895 22 F -0.163 7.163 23 F -0.164 7.164 24 C -0.118 4.118 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.229 0.771 31 H 0.244 0.756 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.173 0.827 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.942 -25.165 3.289 26.312 hybrid contribution -1.310 -0.023 -0.880 1.578 sum 5.632 -25.189 2.409 25.923 Atomic orbital electron populations 1.69964 1.06104 1.26819 1.50422 1.24999 0.94903 0.99465 0.94947 0.86447 0.80190 0.83257 0.77629 1.19536 1.20920 1.20919 1.21072 0.93323 0.90263 1.51302 0.92114 1.19339 0.94231 0.91025 0.97903 1.21694 0.95753 0.80008 1.00976 1.45589 1.10116 1.05151 1.77419 1.16085 0.85759 0.80346 0.78240 1.90931 1.11390 1.86122 1.56951 1.42762 1.10235 1.03515 1.77429 1.17294 0.93208 0.84997 0.94812 1.20965 1.02464 0.92412 1.01153 1.20763 0.94135 0.97344 0.97760 1.21256 0.98540 0.97045 1.00206 1.21242 0.98145 0.97050 1.02441 1.86517 1.27969 1.07526 1.62760 1.24372 0.93083 0.91450 0.80604 1.93117 1.94954 1.94229 1.33955 1.93111 1.62103 1.73950 1.87219 1.20752 0.95427 0.96579 0.99086 0.92872 0.95903 0.95878 0.92438 0.92460 0.77065 0.75616 0.85140 0.85091 0.85683 0.82710 0.83591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.14 2.87 5.61 -4.04 -0.02 2.84 16 11 N -0.73 -12.24 5.56 -65.22 -0.36 -12.61 16 12 C 0.70 11.72 8.30 -86.92 -0.72 11.00 16 13 O -0.58 -11.89 14.03 5.29 0.07 -11.82 16 14 N -0.69 -8.75 5.35 -14.24 -0.08 -8.83 16 15 C 0.20 2.54 6.28 -83.72 -0.53 2.01 16 16 C -0.15 -1.52 9.96 -39.34 -0.39 -1.91 16 17 C -0.08 -0.78 10.03 -39.64 -0.40 -1.18 16 18 C -0.15 -1.65 8.68 -39.33 -0.34 -1.99 16 19 C -0.08 -0.97 6.10 -39.06 -0.24 -1.21 16 20 S -0.09 -0.91 22.16 -107.50 -2.38 -3.30 16 21 C 0.27 2.04 5.37 101.05 0.54 2.59 16 22 F -0.18 -1.68 15.62 2.25 0.04 -1.64 16 23 F -0.18 -1.60 15.66 2.25 0.04 -1.56 16 24 C -0.09 -1.35 8.40 -39.18 -0.33 -1.68 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.40 5.56 8.49 -40.82 -0.35 5.21 16 31 H 0.41 3.68 8.83 -40.82 -0.36 3.32 16 32 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 33 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.13 1.29 4.54 -52.49 -0.24 1.05 16 35 H 0.16 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.15 2.43 6.41 -52.49 -0.34 2.09 16 LS Contribution 332.08 15.07 5.00 5.00 Total: -1.00 -32.86 332.08 -8.72 -41.58 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -3.78 Total: 4.47 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -2.98 Total: -2.40 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.30 Total: -46.52 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.07 Total: -11.82 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.07 Total: -3.21 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.38 Total: -3.30 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.86 -8.72 -41.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273267787.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.206 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds