Wall clock time and date at job start Tue Mar 31 2020 11:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00097 * 2 1 4 4 H 1.48497 * 109.47332 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47261 * 300.00270 * 3 2 1 6 6 H 1.48499 * 109.46950 * 59.99742 * 3 2 1 7 7 C 1.37878 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99897 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99739 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46962 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47066 * 180.02562 * 10 9 7 12 12 C 1.34772 * 119.99881 * 180.02562 * 11 10 9 13 13 O 1.21586 * 120.00064 * 359.97438 * 12 11 10 14 14 N 1.34783 * 120.00091 * 180.02562 * 12 11 10 15 15 C 1.39940 * 120.00046 * 185.31483 * 14 12 11 16 16 C 1.38958 * 120.03117 * 213.29108 * 15 14 12 17 17 C 1.38159 * 120.09139 * 180.02562 * 16 15 14 18 18 C 1.38149 * 120.14910 * 359.68370 * 17 16 15 19 19 C 1.39004 * 120.05674 * 0.59387 * 18 17 16 20 20 S 1.76205 * 120.04188 * 179.69876 * 19 18 17 21 21 C 1.81394 * 103.00024 * 359.72747 * 20 19 18 22 22 F 1.39902 * 109.47274 * 60.00196 * 21 20 19 23 23 F 1.39903 * 109.47267 * 299.99904 * 21 20 19 24 24 C 1.38695 * 120.02945 * 33.31189 * 15 14 12 25 25 H 0.97005 * 119.99963 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47071 * 60.00069 * 9 7 2 27 27 H 1.08994 * 109.47150 * 300.00031 * 9 7 2 28 28 H 1.08997 * 109.46657 * 59.99911 * 10 9 7 29 29 H 1.09003 * 109.46836 * 300.00400 * 10 9 7 30 30 H 0.96994 * 120.00131 * 0.02562 * 11 10 9 31 31 H 0.96996 * 119.99892 * 5.31340 * 14 12 11 32 32 H 1.08003 * 119.95609 * 0.02906 * 16 15 14 33 33 H 1.08004 * 119.92162 * 180.02562 * 17 16 15 34 34 H 1.07999 * 119.96880 * 180.29788 * 18 17 16 35 35 H 1.09000 * 109.47025 * 180.02562 * 21 20 19 36 36 H 1.07989 * 120.07390 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 7 1.5127 -4.9308 -0.0024 12 6 2.1866 -6.0979 -0.0031 13 8 3.4025 -6.0979 -0.0036 14 7 1.5127 -7.2652 -0.0042 15 6 2.2079 -8.4746 0.1074 16 6 1.7375 -9.6096 -0.5418 17 6 2.4225 -10.8043 -0.4321 18 6 3.5807 -10.8737 0.3178 19 6 4.0536 -9.7436 0.9746 20 16 5.5265 -9.8346 1.9375 21 6 6.0229 -11.5703 1.7611 22 9 6.2453 -11.8568 0.4099 23 9 5.0075 -12.3980 2.2522 24 6 3.3667 -8.5416 0.8666 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5566 -0.8903 27 1 0.6247 -2.5570 0.8896 28 1 2.8726 -3.6047 0.8877 29 1 2.8713 -3.6039 -0.8923 30 1 0.5428 -4.9308 -0.0024 31 1 0.5459 -7.2669 -0.0823 32 1 0.8352 -9.5576 -1.1332 33 1 2.0548 -11.6847 -0.9382 34 1 4.1165 -11.8081 0.3977 35 1 6.9387 -11.7455 2.3255 36 1 3.7337 -7.6611 1.3727 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273267787.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:03 Heat of formation + Delta-G solvation = -118.118644 kcal Electronic energy + Delta-G solvation = -22679.926234 eV Core-core repulsion = 18732.460319 eV Total energy + Delta-G solvation = -3947.465915 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.37479 -48.36897 -41.74294 -39.75823 -36.78048 -35.86781 -34.85119 -32.12543 -31.89517 -30.27763 -28.01732 -26.76485 -24.42951 -23.90577 -22.80405 -21.96681 -20.13687 -19.41474 -19.03227 -18.62010 -18.55762 -18.38242 -17.21686 -16.86962 -16.57373 -16.48288 -16.06722 -15.63338 -15.32684 -15.24447 -15.06413 -14.70256 -14.62774 -14.46879 -14.28310 -14.16539 -13.56316 -13.22478 -12.97892 -12.88449 -12.52409 -12.33324 -12.19395 -11.81469 -11.69168 -11.54524 -11.42927 -11.19375 -10.81648 -10.61503 -10.13028 -9.31042 -8.82456 -8.24903 -6.34776 -0.29452 0.03482 0.25052 0.70110 1.40931 1.41768 1.51736 1.57100 1.95284 2.40651 2.65767 2.72511 3.10347 3.18082 3.33039 3.39863 3.82610 3.97068 4.13248 4.33183 4.41462 4.45234 4.49423 4.69159 4.84729 5.03789 5.17412 5.23236 5.27640 5.36846 5.47748 5.58162 5.77216 5.87344 5.92330 6.15813 6.78433 6.94338 7.34551 7.40702 8.87151 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.027184 B = 0.002272 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.775748 B =12323.384679 C =13074.634134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.159 3.841 11 N -0.723 5.723 12 C 0.697 3.303 13 O -0.617 6.617 14 N -0.672 5.672 15 C 0.173 3.827 16 C -0.135 4.135 17 C -0.073 4.073 18 C -0.150 4.150 19 C -0.088 4.088 20 S -0.122 6.122 21 C 0.280 3.720 22 F -0.188 7.188 23 F -0.186 7.186 24 C -0.121 4.121 25 H 0.266 0.734 26 H 0.011 0.989 27 H 0.010 0.990 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.411 0.589 31 H 0.427 0.573 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.135 0.865 35 H 0.205 0.795 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.185 -27.990 2.060 28.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.035 3.965 11 N -0.377 5.377 12 C 0.397 3.603 13 O -0.497 6.497 14 N -0.321 5.321 15 C 0.076 3.924 16 C -0.157 4.157 17 C -0.093 4.093 18 C -0.174 4.174 19 C -0.201 4.201 20 S 0.115 5.885 21 C 0.117 3.883 22 F -0.170 7.170 23 F -0.168 7.168 24 C -0.147 4.147 25 H 0.075 0.925 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.247 0.753 31 H 0.266 0.734 32 H 0.182 0.818 33 H 0.186 0.814 34 H 0.153 0.847 35 H 0.221 0.779 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.742 -27.008 2.726 27.970 hybrid contribution -1.265 0.393 -0.700 1.498 sum 5.477 -26.615 2.026 27.248 Atomic orbital electron populations 1.70058 1.07477 1.27937 1.51092 1.25850 0.95797 1.03037 0.94449 0.85409 0.78978 0.78849 0.77892 1.19022 1.20212 1.20247 1.21483 0.93601 0.91887 1.51397 0.92333 1.19135 0.94213 0.91494 0.96545 1.21145 0.94698 0.80722 0.99897 1.45215 1.10671 1.04132 1.77732 1.16138 0.85261 0.81105 0.77788 1.90912 1.13377 1.86814 1.58599 1.42433 1.11041 1.02236 1.76393 1.17558 0.93376 0.85658 0.95839 1.21308 1.03151 0.91217 1.00068 1.21244 0.93062 0.98387 0.96603 1.21520 0.99186 0.96753 0.99949 1.21399 0.98676 0.97045 1.02995 1.86546 1.27688 1.11575 1.62698 1.24730 0.94169 0.88759 0.80613 1.93098 1.94946 1.94008 1.34914 1.93098 1.62745 1.73711 1.87219 1.20633 0.96993 0.96345 1.00683 0.92535 0.97068 0.97140 0.93584 0.93536 0.75325 0.73358 0.81784 0.81375 0.84696 0.77894 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.78 13.29 21.45 0.28 -53.50 16 2 C 0.01 0.41 5.46 84.65 0.46 0.88 16 3 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.55 -30.24 9.11 25.60 0.23 -30.00 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 9 C 0.02 1.17 5.09 29.85 0.15 1.32 16 10 C 0.16 6.79 5.61 86.38 0.48 7.28 16 11 N -0.72 -24.49 5.56 -478.54 -2.66 -27.16 16 12 C 0.70 23.80 8.30 179.05 1.49 25.29 16 13 O -0.62 -26.44 14.03 -3.99 -0.06 -26.49 16 14 N -0.67 -16.55 5.35 -317.24 -1.70 -18.25 16 15 C 0.17 4.38 6.28 38.13 0.24 4.62 16 16 C -0.14 -2.41 9.96 22.42 0.22 -2.19 16 17 C -0.07 -1.21 10.03 22.23 0.22 -0.98 16 18 C -0.15 -3.13 8.68 22.43 0.19 -2.94 16 19 C -0.09 -2.27 6.10 22.60 0.14 -2.13 16 20 S -0.12 -2.65 22.16 -56.49 -1.25 -3.91 16 21 C 0.28 3.76 5.37 113.37 0.61 4.37 16 22 F -0.19 -3.14 15.62 44.97 0.70 -2.44 16 23 F -0.19 -2.91 15.66 44.97 0.70 -2.21 16 24 C -0.12 -3.63 8.40 22.53 0.19 -3.44 16 25 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 26 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.41 11.39 8.49 -92.71 -0.79 10.61 16 31 H 0.43 6.96 8.83 -92.71 -0.82 6.14 16 32 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.14 2.50 4.54 -2.91 -0.01 2.49 16 35 H 0.20 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.11 4.11 6.41 -2.92 -0.02 4.09 16 Total: -1.00 -73.00 332.08 2.23 -70.77 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -0.45 Total: 15.60 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 4.63 Total: 2.08 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -4.07 Total: -98.90 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.06 Total: -26.49 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 1.41 Total: -4.65 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -2.65 SS G_CDS: -1.25 Total: -3.91 kcal Total: -73.00 2.23 -70.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273267787.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.351 kcal (2) G-P(sol) polarization free energy of solvation -73.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds