Wall clock time and date at job start Tue Mar 31 2020 11:26:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86800 * 120.00097 * 2 1
4 4 H 1.48497 * 109.47332 * 179.97438 * 3 2 1
5 5 H 1.48504 * 109.47261 * 300.00270 * 3 2 1
6 6 H 1.48499 * 109.46950 * 59.99742 * 3 2 1
7 7 C 1.37878 * 120.00007 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99897 * 179.97438 * 7 2 1
9 9 C 1.50700 * 119.99739 * 359.97438 * 7 2 1
10 10 C 1.53005 * 109.46962 * 179.97438 * 9 7 2
11 11 N 1.46496 * 109.47066 * 180.02562 * 10 9 7
12 12 C 1.34772 * 119.99881 * 180.02562 * 11 10 9
13 13 O 1.21586 * 120.00064 * 359.97438 * 12 11 10
14 14 N 1.34783 * 120.00091 * 180.02562 * 12 11 10
15 15 C 1.39940 * 120.00046 * 185.31483 * 14 12 11
16 16 C 1.38958 * 120.03117 * 213.29108 * 15 14 12
17 17 C 1.38159 * 120.09139 * 180.02562 * 16 15 14
18 18 C 1.38149 * 120.14910 * 359.68370 * 17 16 15
19 19 C 1.39004 * 120.05674 * 0.59387 * 18 17 16
20 20 S 1.76205 * 120.04188 * 179.69876 * 19 18 17
21 21 C 1.81394 * 103.00024 * 359.72747 * 20 19 18
22 22 F 1.39902 * 109.47274 * 60.00196 * 21 20 19
23 23 F 1.39903 * 109.47267 * 299.99904 * 21 20 19
24 24 C 1.38695 * 120.02945 * 33.31189 * 15 14 12
25 25 H 0.97005 * 119.99963 * 0.02562 * 1 2 3
26 26 H 1.08999 * 109.47071 * 60.00069 * 9 7 2
27 27 H 1.08994 * 109.47150 * 300.00031 * 9 7 2
28 28 H 1.08997 * 109.46657 * 59.99911 * 10 9 7
29 29 H 1.09003 * 109.46836 * 300.00400 * 10 9 7
30 30 H 0.96994 * 120.00131 * 0.02562 * 11 10 9
31 31 H 0.96996 * 119.99892 * 5.31340 * 14 12 11
32 32 H 1.08003 * 119.95609 * 0.02906 * 16 15 14
33 33 H 1.08004 * 119.92162 * 180.02562 * 17 16 15
34 34 H 1.07999 * 119.96880 * 180.29788 * 18 17 16
35 35 H 1.09000 * 109.47025 * 180.02562 * 21 20 19
36 36 H 1.07989 * 120.07390 * 0.02562 * 24 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3464 0.0006
5 1 1.8904 2.3965 -1.2125
6 1 1.8904 2.3964 1.2125
7 6 2.0046 -1.1941 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 6 2.2453 -3.6621 -0.0018
11 7 1.5127 -4.9308 -0.0024
12 6 2.1866 -6.0979 -0.0031
13 8 3.4025 -6.0979 -0.0036
14 7 1.5127 -7.2652 -0.0042
15 6 2.2079 -8.4746 0.1074
16 6 1.7375 -9.6096 -0.5418
17 6 2.4225 -10.8043 -0.4321
18 6 3.5807 -10.8737 0.3178
19 6 4.0536 -9.7436 0.9746
20 16 5.5265 -9.8346 1.9375
21 6 6.0229 -11.5703 1.7611
22 9 6.2453 -11.8568 0.4099
23 9 5.0075 -12.3980 2.2522
24 6 3.3667 -8.5416 0.8666
25 1 -0.4850 0.8401 -0.0004
26 1 0.6240 -2.5566 -0.8903
27 1 0.6247 -2.5570 0.8896
28 1 2.8726 -3.6047 0.8877
29 1 2.8713 -3.6039 -0.8923
30 1 0.5428 -4.9308 -0.0024
31 1 0.5459 -7.2669 -0.0823
32 1 0.8352 -9.5576 -1.1332
33 1 2.0548 -11.6847 -0.9382
34 1 4.1165 -11.8081 0.3977
35 1 6.9387 -11.7455 2.3255
36 1 3.7337 -7.6611 1.3727
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000273267787.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:26:03
Heat of formation + Delta-G solvation = -118.118644 kcal
Electronic energy + Delta-G solvation = -22679.926234 eV
Core-core repulsion = 18732.460319 eV
Total energy + Delta-G solvation = -3947.465915 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 316.080 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-50.37479 -48.36897 -41.74294 -39.75823 -36.78048 -35.86781 -34.85119 -32.12543
-31.89517 -30.27763 -28.01732 -26.76485 -24.42951 -23.90577 -22.80405 -21.96681
-20.13687 -19.41474 -19.03227 -18.62010 -18.55762 -18.38242 -17.21686 -16.86962
-16.57373 -16.48288 -16.06722 -15.63338 -15.32684 -15.24447 -15.06413 -14.70256
-14.62774 -14.46879 -14.28310 -14.16539 -13.56316 -13.22478 -12.97892 -12.88449
-12.52409 -12.33324 -12.19395 -11.81469 -11.69168 -11.54524 -11.42927 -11.19375
-10.81648 -10.61503 -10.13028 -9.31042 -8.82456 -8.24903 -6.34776 -0.29452
0.03482 0.25052 0.70110 1.40931 1.41768 1.51736 1.57100 1.95284
2.40651 2.65767 2.72511 3.10347 3.18082 3.33039 3.39863 3.82610
3.97068 4.13248 4.33183 4.41462 4.45234 4.49423 4.69159 4.84729
5.03789 5.17412 5.23236 5.27640 5.36846 5.47748 5.58162 5.77216
5.87344 5.92330 6.15813 6.78433 6.94338 7.34551 7.40702 8.87151
Molecular weight = 316.08amu
Principal moments of inertia in cm(-1)
A = 0.027184 B = 0.002272 C = 0.002141
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1029.775748 B =12323.384679 C =13074.634134
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.926 5.926
2 C 0.007 3.993
3 Si 0.964 3.036
4 H -0.266 1.266
5 H -0.277 1.277
6 H -0.277 1.277
7 C -0.545 4.545
8 H 0.058 0.942
9 C 0.024 3.976
10 C 0.159 3.841
11 N -0.723 5.723
12 C 0.697 3.303
13 O -0.617 6.617
14 N -0.672 5.672
15 C 0.173 3.827
16 C -0.135 4.135
17 C -0.073 4.073
18 C -0.150 4.150
19 C -0.088 4.088
20 S -0.122 6.122
21 C 0.280 3.720
22 F -0.188 7.188
23 F -0.186 7.186
24 C -0.121 4.121
25 H 0.266 0.734
26 H 0.011 0.989
27 H 0.010 0.990
28 H 0.046 0.954
29 H 0.046 0.954
30 H 0.411 0.589
31 H 0.427 0.573
32 H 0.165 0.835
33 H 0.169 0.831
34 H 0.135 0.865
35 H 0.205 0.795
36 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.185 -27.990 2.060 28.541
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.566 5.566
2 C -0.191 4.191
3 Si 0.789 3.211
4 H -0.190 1.190
5 H -0.202 1.202
6 H -0.202 1.202
7 C -0.584 4.584
8 H 0.077 0.923
9 C -0.014 4.014
10 C 0.035 3.965
11 N -0.377 5.377
12 C 0.397 3.603
13 O -0.497 6.497
14 N -0.321 5.321
15 C 0.076 3.924
16 C -0.157 4.157
17 C -0.093 4.093
18 C -0.174 4.174
19 C -0.201 4.201
20 S 0.115 5.885
21 C 0.117 3.883
22 F -0.170 7.170
23 F -0.168 7.168
24 C -0.147 4.147
25 H 0.075 0.925
26 H 0.029 0.971
27 H 0.029 0.971
28 H 0.064 0.936
29 H 0.065 0.935
30 H 0.247 0.753
31 H 0.266 0.734
32 H 0.182 0.818
33 H 0.186 0.814
34 H 0.153 0.847
35 H 0.221 0.779
36 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges 6.742 -27.008 2.726 27.970
hybrid contribution -1.265 0.393 -0.700 1.498
sum 5.477 -26.615 2.026 27.248
Atomic orbital electron populations
1.70058 1.07477 1.27937 1.51092 1.25850 0.95797 1.03037 0.94449
0.85409 0.78978 0.78849 0.77892 1.19022 1.20212 1.20247 1.21483
0.93601 0.91887 1.51397 0.92333 1.19135 0.94213 0.91494 0.96545
1.21145 0.94698 0.80722 0.99897 1.45215 1.10671 1.04132 1.77732
1.16138 0.85261 0.81105 0.77788 1.90912 1.13377 1.86814 1.58599
1.42433 1.11041 1.02236 1.76393 1.17558 0.93376 0.85658 0.95839
1.21308 1.03151 0.91217 1.00068 1.21244 0.93062 0.98387 0.96603
1.21520 0.99186 0.96753 0.99949 1.21399 0.98676 0.97045 1.02995
1.86546 1.27688 1.11575 1.62698 1.24730 0.94169 0.88759 0.80613
1.93098 1.94946 1.94008 1.34914 1.93098 1.62745 1.73711 1.87219
1.20633 0.96993 0.96345 1.00683 0.92535 0.97068 0.97140 0.93584
0.93536 0.75325 0.73358 0.81784 0.81375 0.84696 0.77894 0.86836
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -53.78 13.29 21.45 0.28 -53.50 16
2 C 0.01 0.41 5.46 84.65 0.46 0.88 16
3 Si 0.96 43.47 29.54 68.60 2.03 45.50 16
4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16
5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16
6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16
7 C -0.55 -30.24 9.11 25.60 0.23 -30.00 16
8 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16
9 C 0.02 1.17 5.09 29.85 0.15 1.32 16
10 C 0.16 6.79 5.61 86.38 0.48 7.28 16
11 N -0.72 -24.49 5.56 -478.54 -2.66 -27.16 16
12 C 0.70 23.80 8.30 179.05 1.49 25.29 16
13 O -0.62 -26.44 14.03 -3.99 -0.06 -26.49 16
14 N -0.67 -16.55 5.35 -317.24 -1.70 -18.25 16
15 C 0.17 4.38 6.28 38.13 0.24 4.62 16
16 C -0.14 -2.41 9.96 22.42 0.22 -2.19 16
17 C -0.07 -1.21 10.03 22.23 0.22 -0.98 16
18 C -0.15 -3.13 8.68 22.43 0.19 -2.94 16
19 C -0.09 -2.27 6.10 22.60 0.14 -2.13 16
20 S -0.12 -2.65 22.16 -56.49 -1.25 -3.91 16
21 C 0.28 3.76 5.37 113.37 0.61 4.37 16
22 F -0.19 -3.14 15.62 44.97 0.70 -2.44 16
23 F -0.19 -2.91 15.66 44.97 0.70 -2.21 16
24 C -0.12 -3.63 8.40 22.53 0.19 -3.44 16
25 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16
26 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16
27 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16
28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16
29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16
30 H 0.41 11.39 8.49 -92.71 -0.79 10.61 16
31 H 0.43 6.96 8.83 -92.71 -0.82 6.14 16
32 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16
33 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16
34 H 0.14 2.50 4.54 -2.91 -0.01 2.49 16
35 H 0.20 0.81 8.14 -2.39 -0.02 0.79 16
36 H 0.11 4.11 6.41 -2.92 -0.02 4.09 16
Total: -1.00 -73.00 332.08 2.23 -70.77
By element:
Atomic # 1 Polarization: 16.06 SS G_CDS: -0.45 Total: 15.60 kcal
Atomic # 6 Polarization: -2.56 SS G_CDS: 4.63 Total: 2.08 kcal
Atomic # 7 Polarization: -94.83 SS G_CDS: -4.07 Total: -98.90 kcal
Atomic # 8 Polarization: -26.44 SS G_CDS: -0.06 Total: -26.49 kcal
Atomic # 9 Polarization: -6.05 SS G_CDS: 1.41 Total: -4.65 kcal
Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal
Atomic # 16 Polarization: -2.65 SS G_CDS: -1.25 Total: -3.91 kcal
Total: -73.00 2.23 -70.77 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000273267787.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.351 kcal
(2) G-P(sol) polarization free energy of solvation -73.000 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.352 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.767 kcal
(6) G-S(sol) free energy of system = (1) + (5) -118.119 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds