Wall clock time and date at job start Tue Mar 31 2020 11:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 119.99899 * 2 1 4 4 C 1.50700 * 109.47067 * 270.00050 * 3 2 1 5 5 H 1.07999 * 119.99825 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99901 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00041 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 120.00073 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.46943 * 90.00818 * 8 6 4 10 10 H 1.48499 * 109.47011 * 210.00574 * 8 6 4 11 11 H 1.48502 * 109.47296 * 330.00356 * 8 6 4 12 12 C 1.34779 * 120.00293 * 179.97438 * 2 1 3 13 13 O 1.21358 * 120.00072 * 174.60623 * 12 2 1 14 14 C 1.49324 * 119.99701 * 354.60692 * 12 2 1 15 15 O 1.21401 * 119.99959 * 354.37689 * 14 12 2 16 16 N 1.34773 * 119.99986 * 174.38129 * 14 12 2 17 17 C 1.40011 * 119.99947 * 177.04617 * 16 14 12 18 18 C 1.39047 * 120.06737 * 325.92282 * 17 16 14 19 19 F 1.35102 * 120.03247 * 359.97438 * 18 17 16 20 20 C 1.38318 * 119.92920 * 179.70190 * 18 17 16 21 21 C 1.38479 * 120.06759 * 0.57188 * 20 18 17 22 22 F 1.35100 * 119.93136 * 179.74025 * 21 20 18 23 23 C 1.38477 * 120.13892 * 359.72460 * 21 20 18 24 24 C 1.38316 * 120.06595 * 359.97438 * 23 21 20 25 25 F 1.35098 * 120.03432 * 180.02562 * 24 23 21 26 26 H 1.08997 * 109.46935 * 265.04436 * 1 2 3 27 27 H 1.09001 * 109.46939 * 25.04066 * 1 2 3 28 28 H 1.09005 * 109.47233 * 145.04045 * 1 2 3 29 29 H 1.08996 * 109.47207 * 30.00006 * 3 2 1 30 30 H 1.08998 * 109.47048 * 150.00183 * 3 2 1 31 31 H 0.97005 * 120.00434 * 179.97438 * 7 6 4 32 32 H 0.97001 * 120.00376 * 356.76557 * 16 14 12 33 33 H 1.07998 * 119.96655 * 180.29537 * 20 18 17 34 34 H 1.07993 * 119.97204 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.3456 3.2574 -2.9126 8 14 3.7338 3.9288 -0.2529 9 1 5.1069 3.5070 0.1236 10 1 3.7496 5.3554 -0.6648 11 1 2.8273 3.7597 0.9111 12 6 2.1389 -1.1672 0.0005 13 8 3.3485 -1.1695 -0.0983 14 6 1.3973 -2.4574 0.1226 15 8 0.2000 -2.4527 0.3238 16 7 2.0570 -3.6272 0.0097 17 6 1.3733 -4.8363 0.1856 18 6 0.3300 -4.9199 1.1010 19 9 -0.0251 -3.8343 1.8225 20 6 -0.3475 -6.1142 1.2680 21 6 0.0200 -7.2290 0.5333 22 9 -0.6402 -8.3955 0.7024 23 6 1.0626 -7.1506 -0.3747 24 6 1.7399 -5.9575 -0.5507 25 9 2.7567 -5.8816 -1.4371 26 1 -0.3633 -0.0888 1.0238 27 1 -0.3633 0.9311 -0.4350 28 1 -0.3634 -0.8423 -0.5889 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1385 0.5138 31 1 3.8224 4.0834 -3.0900 32 1 3.0046 -3.6316 -0.1975 33 1 -1.1610 -6.1785 1.9753 34 1 1.3472 -8.0217 -0.9459 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283249060.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:03 Heat of formation + Delta-G solvation = -168.119462 kcal Electronic energy + Delta-G solvation = -26113.438874 eV Core-core repulsion = 21597.591585 eV Total energy + Delta-G solvation = -4515.847289 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.28289 -50.13371 -50.10627 -42.12986 -40.28142 -39.22263 -37.28526 -35.92546 -34.66573 -31.76852 -30.95651 -30.50317 -27.85154 -26.39755 -24.77404 -24.34425 -22.96613 -21.30230 -19.79348 -19.43806 -19.20581 -19.01200 -18.47261 -17.63512 -17.48069 -17.24375 -17.04157 -16.96288 -16.70963 -16.49377 -16.26926 -16.13489 -16.02043 -15.43445 -15.24048 -15.00803 -14.47921 -14.00128 -13.80610 -13.76379 -13.69124 -13.39460 -13.13556 -13.02880 -12.92823 -12.53208 -12.36674 -12.06217 -11.77228 -11.68647 -10.84409 -10.58700 -10.10297 -9.70057 -9.46631 -8.35174 -6.42621 -0.58807 -0.36676 0.30323 1.03473 1.36247 1.39011 1.47863 1.87018 2.08194 2.26704 2.31031 2.40057 2.93222 2.98467 3.03724 3.16156 3.37506 3.65348 4.09060 4.33833 4.38607 4.47044 4.56414 4.59248 4.67717 4.74817 4.80973 4.82132 5.02435 5.30175 5.38278 5.46416 5.62779 6.10846 6.22788 6.46798 6.58837 6.84314 7.21426 8.81599 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.028834 B = 0.003198 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.833405 B = 8753.708929 C = 9292.457195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.567 5.567 3 C 0.221 3.779 4 C -0.543 4.543 5 H 0.029 0.971 6 C 0.014 3.986 7 N -0.943 5.943 8 Si 0.949 3.051 9 H -0.272 1.272 10 H -0.276 1.276 11 H -0.235 1.235 12 C 0.494 3.506 13 O -0.551 6.551 14 C 0.510 3.490 15 O -0.484 6.484 16 N -0.637 5.637 17 C 0.052 3.948 18 C 0.140 3.860 19 F -0.113 7.113 20 C -0.168 4.168 21 C 0.155 3.845 22 F -0.117 7.117 23 C -0.162 4.162 24 C 0.136 3.864 25 F -0.120 7.120 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.033 0.967 31 H 0.270 0.730 32 H 0.432 0.568 33 H 0.182 0.818 34 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.963 -22.347 10.465 25.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.298 5.298 3 C 0.100 3.900 4 C -0.581 4.581 5 H 0.047 0.953 6 C -0.185 4.185 7 N -0.582 5.582 8 Si 0.771 3.229 9 H -0.197 1.197 10 H -0.201 1.201 11 H -0.158 1.158 12 C 0.276 3.724 13 O -0.430 6.430 14 C 0.293 3.707 15 O -0.357 6.357 16 N -0.285 5.285 17 C -0.045 4.045 18 C 0.118 3.882 19 F -0.091 7.091 20 C -0.188 4.188 21 C 0.135 3.865 22 F -0.095 7.095 23 C -0.182 4.182 24 C 0.114 3.886 25 F -0.099 7.099 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.272 0.728 33 H 0.199 0.801 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -8.128 -22.082 10.461 25.751 hybrid contribution 1.014 0.883 -0.278 1.373 sum -7.115 -21.200 10.183 24.571 Atomic orbital electron populations 1.22178 0.76690 1.03715 1.03321 1.47850 1.09129 1.05485 1.67338 1.19647 0.93138 0.81081 0.96155 1.21449 1.37503 1.07209 0.91965 0.95294 1.25854 0.95053 0.98759 0.98786 1.70043 1.42304 1.24464 1.21435 0.85698 0.79811 0.77681 0.79696 1.19684 1.20147 1.15785 1.19946 0.87348 0.85313 0.79785 1.90730 1.14763 1.87197 1.50287 1.20145 0.87362 0.85009 0.78207 1.90788 1.13829 1.86992 1.44123 1.42947 1.14454 1.02403 1.68730 1.17933 0.99516 0.86670 1.00373 1.16930 0.95347 0.84408 0.91516 1.91637 1.90650 1.52026 1.74773 1.21153 1.03739 0.89614 1.04292 1.16692 0.92047 0.81655 0.96117 1.91595 1.78984 1.44830 1.94128 1.21136 0.96773 0.98450 1.01852 1.16677 0.89225 0.92819 0.89869 1.91583 1.56332 1.96742 1.65222 0.90342 0.90664 0.89937 0.91919 0.94856 0.92086 0.72805 0.80072 0.79312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.79 9.24 127.77 1.18 3.97 16 2 N -0.57 -23.85 2.86 -852.87 -2.44 -26.29 16 3 C 0.22 10.49 4.17 85.63 0.36 10.85 16 4 C -0.54 -31.44 9.94 25.60 0.25 -31.19 16 5 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 6 C 0.01 0.81 5.47 84.65 0.46 1.28 16 7 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 8 Si 0.95 42.87 27.47 68.60 1.88 44.75 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.23 -9.40 6.54 99.48 0.65 -8.75 16 12 C 0.49 20.38 7.72 87.23 0.67 21.06 16 13 O -0.55 -25.73 16.13 -3.27 -0.05 -25.79 16 14 C 0.51 17.12 7.16 87.23 0.62 17.75 16 15 O -0.48 -16.11 9.77 -3.41 -0.03 -16.14 16 16 N -0.64 -17.68 5.23 -304.44 -1.59 -19.27 16 17 C 0.05 1.18 6.29 38.22 0.24 1.42 16 18 C 0.14 3.01 6.69 22.48 0.15 3.16 16 19 F -0.11 -3.01 13.40 44.97 0.60 -2.41 16 20 C -0.17 -2.46 10.00 22.35 0.22 -2.23 16 21 C 0.16 1.98 7.30 22.38 0.16 2.15 16 22 F -0.12 -1.46 17.26 44.97 0.78 -0.68 16 23 C -0.16 -2.01 10.00 22.35 0.22 -1.79 16 24 C 0.14 2.45 7.31 22.48 0.16 2.62 16 25 F -0.12 -2.40 16.94 44.97 0.76 -1.64 16 26 H 0.08 2.28 8.11 -2.39 -0.02 2.26 16 27 H 0.07 2.50 8.03 -2.39 -0.02 2.48 16 28 H 0.08 2.75 5.92 -2.38 -0.01 2.74 16 29 H 0.06 2.69 7.13 -2.39 -0.02 2.68 16 30 H 0.03 1.63 6.93 -2.39 -0.02 1.62 16 31 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 32 H 0.43 11.40 8.13 -92.71 -0.75 10.64 16 33 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.19 1.28 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -71.68 311.77 5.31 -66.37 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.38 Total: 10.55 kcal Atomic # 6 Polarization: 24.31 SS G_CDS: 4.72 Total: 29.03 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -3.73 Total: -104.04 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -0.09 Total: -41.93 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 2.14 Total: -4.73 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.88 Total: 44.75 kcal Total: -71.68 5.31 -66.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283249060.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.754 kcal (2) G-P(sol) polarization free energy of solvation -71.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds