Wall clock time and date at job start Tue Mar 31 2020 11:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35314 * 126.12529 * 2 1 4 4 C 1.39874 * 107.92161 * 179.90353 * 3 2 1 5 5 C 1.50700 * 125.90295 * 180.14016 * 4 3 2 6 6 F 1.39902 * 109.47348 * 185.23472 * 5 4 3 7 7 F 1.39893 * 109.46995 * 305.23935 * 5 4 3 8 8 F 1.39906 * 109.46736 * 65.23794 * 5 4 3 9 9 N 1.30843 * 108.20117 * 0.36552 * 4 3 2 10 10 N 1.34952 * 126.12806 * 180.31191 * 2 1 3 11 11 C 1.46495 * 126.03633 * 359.94003 * 10 2 1 12 12 C 1.50698 * 109.47177 * 89.99998 * 11 10 2 13 13 O 1.21296 * 119.99701 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00197 * 179.97438 * 12 11 10 15 15 C 1.37097 * 119.99974 * 180.02562 * 14 12 11 16 16 H 1.07998 * 120.00633 * 20.22237 * 15 14 12 17 17 C 1.38951 * 119.99945 * 200.22292 * 15 14 12 18 18 N 1.31411 * 120.00216 * 21.42337 * 17 15 14 19 19 Si 1.86798 * 119.99993 * 201.42854 * 17 15 14 20 20 H 1.48501 * 109.47555 * 89.99820 * 19 17 15 21 21 H 1.48501 * 109.47244 * 210.00026 * 19 17 15 22 22 H 1.48502 * 109.47110 * 329.99778 * 19 17 15 23 23 C 1.46505 * 119.99919 * 0.02562 * 14 12 11 24 24 C 1.47202 * 109.46957 * 83.94844 * 23 14 12 25 25 N 5.58005 * 58.15145 * 176.91548 * 2 1 3 26 26 H 1.09001 * 109.46921 * 269.69179 * 1 2 3 27 27 H 1.08996 * 109.46674 * 149.68612 * 1 2 3 28 28 H 1.09001 * 109.46449 * 29.68918 * 1 2 3 29 29 H 1.08003 * 126.04499 * 0.03206 * 3 2 1 30 30 H 1.08995 * 109.47104 * 210.00097 * 11 10 2 31 31 H 1.09008 * 109.47334 * 330.00464 * 11 10 2 32 32 H 0.96997 * 120.00375 * 180.02562 * 18 17 15 33 33 H 1.08998 * 109.46854 * 203.94377 * 23 14 12 34 34 H 1.08998 * 109.46929 * 323.94580 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6560 0.0022 5 6 4.8543 1.5395 0.0060 6 9 6.0025 0.7491 -0.1129 7 9 4.7882 2.4308 -1.0702 8 9 4.9056 2.2589 1.2049 9 7 3.6335 -0.6524 -0.0044 10 7 2.3027 -1.0900 -0.0059 11 6 1.8540 -2.4845 -0.0123 12 6 1.6989 -2.9559 -1.4352 13 8 1.9400 -2.2012 -2.3537 14 7 1.2934 -4.2162 -1.6873 15 6 1.1528 -4.6451 -2.9818 16 1 1.6582 -4.1238 -3.7814 17 6 0.3601 -5.7505 -3.2653 18 7 -0.5683 -6.1286 -2.4155 19 14 0.6141 -6.6992 -4.8542 20 1 1.6079 -7.7801 -4.6320 21 1 -0.6758 -7.2942 -5.2871 22 1 1.1121 -5.7777 -5.9068 23 6 1.0027 -5.1278 -0.5779 24 6 -0.3745 -4.9054 -0.1080 25 7 -1.4374 -4.7331 0.2551 26 1 -0.3633 -0.0055 1.0277 27 1 -0.3632 -0.8871 -0.5187 28 1 -0.3632 0.8928 -0.5090 29 1 1.9741 2.1211 0.0005 30 1 2.5903 -3.1054 0.4979 31 1 0.8958 -2.5603 0.5020 32 1 -1.1214 -6.9004 -2.6132 33 1 1.1090 -6.1582 -0.9170 34 1 1.7000 -4.9403 0.2386 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291546317.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:22 Heat of formation + Delta-G solvation = -81.214578 kcal Electronic energy + Delta-G solvation = -26263.483251 eV Core-core repulsion = 21783.697192 eV Total energy + Delta-G solvation = -4479.786059 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.089 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.21404 -48.73151 -48.71469 -42.64287 -40.61063 -37.67923 -36.25011 -34.97322 -33.85562 -33.15520 -30.07970 -29.16471 -28.19792 -27.34315 -25.89324 -22.32162 -22.04157 -20.74045 -19.83438 -19.60484 -19.32586 -18.57379 -18.51174 -18.13626 -17.36807 -16.76362 -16.02585 -16.00210 -15.72903 -15.54316 -15.50326 -15.14008 -14.93643 -14.85859 -14.83797 -14.79329 -14.44420 -14.39899 -13.95524 -13.74755 -13.58835 -13.49671 -13.29011 -13.11842 -13.02419 -12.90566 -12.39111 -12.21620 -12.13413 -12.00898 -11.18512 -11.13163 -10.37978 -10.00378 -9.73683 -8.47897 -6.05300 0.41765 0.87361 1.26853 1.34045 1.47672 1.55823 1.67759 1.73419 1.96748 2.20953 2.31882 2.58055 2.87885 2.92569 2.96321 3.32594 3.46943 3.54380 3.64828 3.79672 3.99535 4.13141 4.32448 4.45432 4.53441 4.63785 4.83292 4.88951 4.98315 5.14905 5.43126 5.71026 5.95814 6.25575 6.30276 6.97281 7.02712 7.21679 7.75474 8.55279 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.020004 B = 0.003666 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.407447 B = 7635.391988 C = 8348.680849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.100 3.900 3 C -0.241 4.241 4 C -0.034 4.034 5 C 0.566 3.434 6 F -0.174 7.174 7 F -0.166 7.166 8 F -0.161 7.161 9 N -0.264 5.264 10 N -0.334 5.334 11 C 0.116 3.884 12 C 0.432 3.568 13 O -0.606 6.606 14 N -0.442 5.442 15 C -0.341 4.341 16 H 0.078 0.922 17 C 0.016 3.984 18 N -0.883 5.883 19 Si 0.983 3.017 20 H -0.259 1.259 21 H -0.284 1.284 22 H -0.281 1.281 23 C 0.214 3.786 24 C 0.252 3.748 25 N -0.495 5.495 26 H 0.113 0.887 27 H 0.053 0.947 28 H 0.109 0.891 29 H 0.186 0.814 30 H 0.153 0.847 31 H 0.138 0.862 32 H 0.277 0.723 33 H 0.126 0.874 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.316 7.927 9.350 13.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.027 4.027 3 C -0.270 4.270 4 C -0.200 4.200 5 C 0.509 3.491 6 F -0.156 7.156 7 F -0.148 7.148 8 F -0.143 7.143 9 N -0.088 5.088 10 N -0.117 5.117 11 C -0.008 4.008 12 C 0.220 3.780 13 O -0.490 6.490 14 N -0.162 5.162 15 C -0.468 4.468 16 H 0.096 0.904 17 C -0.188 4.188 18 N -0.521 5.521 19 Si 0.808 3.192 20 H -0.183 1.183 21 H -0.210 1.210 22 H -0.207 1.207 23 C 0.088 3.912 24 C -0.066 4.066 25 N -0.175 5.175 26 H 0.131 0.869 27 H 0.072 0.928 28 H 0.128 0.872 29 H 0.203 0.797 30 H 0.171 0.829 31 H 0.156 0.844 32 H 0.087 0.913 33 H 0.144 0.856 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.425 7.211 9.436 12.673 hybrid contribution -0.049 -0.003 -1.424 1.425 sum 4.376 7.208 8.011 11.631 Atomic orbital electron populations 1.20628 0.84575 1.04616 1.05169 1.21716 0.96520 0.86043 0.98424 1.21172 0.88804 1.01049 1.15938 1.22169 0.95378 0.93096 1.09343 1.16695 0.80551 0.77687 0.74128 1.93213 1.52433 1.74224 1.95697 1.93228 1.96333 1.69255 1.55936 1.93234 1.96495 1.78762 1.45773 1.77234 0.98759 1.11058 1.21759 1.48191 1.02746 1.06365 1.54388 1.21843 1.04516 0.78672 0.95784 1.20906 0.83901 0.82018 0.91151 1.90604 1.55964 1.54718 1.47716 1.43717 1.57587 1.08679 1.06179 1.19515 1.29713 1.13024 0.84585 0.90450 1.25813 0.92903 0.98200 1.01908 1.69883 1.16961 1.26457 1.38773 0.85076 0.77748 0.78444 0.77971 1.18316 1.21010 1.20658 1.19175 0.84331 0.98177 0.89563 1.29597 0.95532 0.91496 0.89926 1.80960 1.12302 1.10441 1.13802 0.86913 0.92785 0.87246 0.79677 0.82943 0.84418 0.91279 0.85593 0.83698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.06 9.90 71.24 0.71 -1.36 16 2 C 0.10 2.90 6.93 41.41 0.29 3.18 16 3 C -0.24 -6.59 10.64 21.99 0.23 -6.36 16 4 C -0.03 -1.06 6.51 43.10 0.28 -0.78 16 5 C 0.57 15.53 3.51 71.24 0.25 15.78 16 6 F -0.17 -5.15 17.14 44.97 0.77 -4.38 16 7 F -0.17 -4.46 17.30 44.97 0.78 -3.68 16 8 F -0.16 -3.91 17.30 44.97 0.78 -3.14 16 9 N -0.26 -9.37 12.35 -47.38 -0.59 -9.95 16 10 N -0.33 -11.02 3.10 -338.41 -1.05 -12.07 16 11 C 0.12 3.48 5.15 85.63 0.44 3.92 16 12 C 0.43 18.00 7.63 87.66 0.67 18.67 16 13 O -0.61 -31.50 16.10 -3.08 -0.05 -31.55 16 14 N -0.44 -18.54 2.60 -645.41 -1.68 -20.21 16 15 C -0.34 -16.69 9.27 84.04 0.78 -15.91 16 16 H 0.08 4.22 7.43 -2.91 -0.02 4.20 16 17 C 0.02 0.71 4.84 84.93 0.41 1.12 16 18 N -0.88 -40.82 9.58 21.66 0.21 -40.61 16 19 Si 0.98 38.18 29.60 68.60 2.03 40.21 16 20 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 21 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 23 C 0.21 6.95 4.91 84.57 0.42 7.36 16 24 C 0.25 9.33 12.82 89.44 1.15 10.47 16 25 N -0.49 -20.21 18.54 20.01 0.37 -19.84 16 26 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.05 1.49 7.72 -2.39 -0.02 1.48 16 28 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.19 3.75 8.06 -2.91 -0.02 3.72 16 30 H 0.15 3.48 7.42 -2.39 -0.02 3.46 16 31 H 0.14 3.45 7.01 -2.38 -0.02 3.44 16 32 H 0.28 12.43 8.31 -92.71 -0.77 11.66 16 33 H 0.13 4.27 6.63 -2.39 -0.02 4.25 16 34 H 0.15 2.96 6.69 -2.39 -0.02 2.94 16 Total: -1.00 -68.29 322.60 8.38 -59.91 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 1.18 Total: 9.20 kcal Atomic # 6 Polarization: 30.49 SS G_CDS: 5.62 Total: 36.11 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -2.73 Total: -102.69 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.05 Total: -31.55 kcal Atomic # 9 Polarization: -13.53 SS G_CDS: 2.33 Total: -11.20 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -68.29 8.38 -59.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291546317.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.301 kcal (2) G-P(sol) polarization free energy of solvation -68.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds