Wall clock time and date at job start Tue Mar 31 2020 11:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00011 * 2 1 4 4 H 1.48498 * 109.47274 * 269.99884 * 3 2 1 5 5 H 1.48497 * 109.47352 * 29.99981 * 3 2 1 6 6 H 1.48506 * 109.47183 * 150.00080 * 3 2 1 7 7 C 1.37878 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00124 * 184.53869 * 7 2 1 9 9 C 1.50706 * 119.99898 * 4.54509 * 7 2 1 10 10 N 1.46504 * 109.46843 * 294.43635 * 9 7 2 11 11 C 1.46498 * 119.99758 * 97.10536 * 10 9 7 12 12 C 1.50703 * 109.46982 * 95.57477 * 11 10 9 13 13 C 1.38679 * 120.41261 * 269.71680 * 12 11 10 14 14 C 1.38627 * 118.41534 * 179.78196 * 13 12 11 15 15 C 1.38227 * 119.16453 * 0.51442 * 14 13 12 16 16 N 1.31859 * 120.75913 * 359.72423 * 15 14 13 17 17 C 1.31878 * 121.72566 * 0.02562 * 16 15 14 18 18 C 1.34780 * 119.99894 * 277.10707 * 10 9 7 19 19 O 1.21279 * 119.99669 * 184.96122 * 18 10 9 20 20 C 1.50700 * 120.00082 * 4.96704 * 18 10 9 21 21 S 1.81396 * 109.47105 * 184.96999 * 20 18 10 22 22 C 1.81396 * 103.00068 * 179.97438 * 21 20 18 23 23 F 1.39900 * 109.47289 * 300.00070 * 22 21 20 24 24 F 1.39899 * 109.47218 * 60.00198 * 22 21 20 25 25 H 0.96995 * 119.99773 * 354.99891 * 1 2 3 26 26 H 1.09002 * 109.46961 * 54.43489 * 9 7 2 27 27 H 1.08997 * 109.47225 * 174.43868 * 9 7 2 28 28 H 1.09001 * 109.47094 * 215.57041 * 11 10 9 29 29 H 1.08994 * 109.47714 * 335.57028 * 11 10 9 30 30 H 1.07993 * 120.79488 * 0.02562 * 13 12 11 31 31 H 1.08007 * 120.41747 * 180.22622 * 14 13 12 32 32 H 1.07995 * 119.62494 * 179.74908 * 15 14 13 33 33 H 1.08004 * 119.61443 * 180.02562 * 17 16 15 34 34 H 1.09007 * 109.46785 * 304.97099 * 20 18 10 35 35 H 1.08997 * 109.47217 * 64.96420 * 20 18 10 36 36 H 1.08998 * 109.47307 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0820 -1.1955 0.0745 9 6 1.2546 -2.4972 -0.1023 10 7 0.4313 -2.6825 1.0952 11 6 -0.9874 -2.3177 1.0723 12 6 -1.8154 -3.5394 0.7674 13 6 -2.1260 -3.8677 -0.5436 14 6 -2.8864 -5.0031 -0.7770 15 6 -3.3156 -5.7590 0.2978 16 7 -3.0052 -5.4137 1.5319 17 6 -2.2798 -4.3432 1.7909 18 6 0.9790 -3.1886 2.2179 19 8 0.2797 -3.4263 3.1799 20 6 2.4603 -3.4591 2.2779 21 16 2.8642 -4.2671 3.8509 22 6 4.6585 -4.5077 3.7372 23 9 4.9522 -5.3102 2.6295 24 9 5.2873 -3.2663 3.5935 25 1 -0.4849 0.8368 0.0732 26 1 0.6144 -2.4793 -0.9843 27 1 1.9650 -3.3197 -0.1856 28 1 -1.2752 -1.9171 2.0443 29 1 -1.1563 -1.5633 0.3040 30 1 -1.7805 -3.2556 -1.3635 31 1 -3.1441 -5.2909 -1.7856 32 1 -3.9118 -6.6427 0.1248 33 1 -2.0452 -4.0924 2.8149 34 1 2.7445 -4.1104 1.4513 35 1 3.0048 -2.5179 2.2025 36 1 5.0180 -4.9946 4.6437 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294836156.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:13 Heat of formation + Delta-G solvation = -88.902464 kcal Electronic energy + Delta-G solvation = -24276.960282 eV Core-core repulsion = 20330.761277 eV Total energy + Delta-G solvation = -3946.199006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.06066 -47.15139 -39.84750 -38.68429 -35.23703 -32.90200 -31.99228 -31.36357 -29.34970 -27.74027 -26.81408 -25.24186 -23.34349 -22.84119 -21.65209 -19.07911 -17.93216 -17.56929 -17.36057 -16.85108 -16.74195 -16.00886 -15.70273 -15.32064 -14.98593 -14.70569 -14.49891 -14.40572 -14.00056 -13.49230 -13.39823 -13.09318 -13.06070 -12.67231 -12.61223 -12.54901 -12.08608 -11.95349 -11.43082 -11.21240 -11.10008 -11.06240 -10.68218 -10.05924 -10.01245 -9.80231 -9.46582 -9.21945 -9.05294 -8.82743 -8.50538 -7.97750 -7.49464 -6.38025 -4.55345 1.02072 1.52198 1.70574 2.16680 3.10173 3.19808 3.22271 3.39469 3.80942 3.99406 4.13927 4.39395 4.44467 4.52105 4.85750 4.89002 5.20293 5.39273 5.41810 5.44554 5.50841 5.60653 5.83058 5.97344 6.17769 6.36810 6.46155 6.50428 6.82685 6.90058 7.09804 7.17688 7.55588 7.66036 7.83063 8.31036 8.38810 8.66466 9.02426 9.20296 10.61153 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.008856 B = 0.006274 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.994554 B = 4461.628220 C = 6932.698561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.080 3.920 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.224 3.776 10 N -0.557 5.557 11 C 0.152 3.848 12 C -0.140 4.140 13 C -0.063 4.063 14 C -0.183 4.183 15 C 0.081 3.919 16 N -0.494 5.494 17 C 0.115 3.885 18 C 0.528 3.472 19 O -0.561 6.561 20 C -0.109 4.109 21 S -0.172 6.172 22 C 0.266 3.734 23 F -0.192 7.192 24 F -0.189 7.189 25 H 0.269 0.731 26 H 0.047 0.953 27 H 0.027 0.973 28 H 0.066 0.934 29 H 0.148 0.852 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.146 0.854 33 H 0.159 0.841 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.927 -7.002 0.766 7.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.125 4.125 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.105 3.895 10 N -0.286 5.286 11 C 0.028 3.972 12 C -0.144 4.144 13 C -0.090 4.090 14 C -0.203 4.203 15 C -0.076 4.076 16 N -0.203 5.203 17 C -0.042 4.042 18 C 0.314 3.686 19 O -0.443 6.443 20 C -0.259 4.259 21 S 0.050 5.950 22 C 0.103 3.897 23 F -0.174 7.174 24 F -0.171 7.171 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.165 0.835 30 H 0.152 0.848 31 H 0.145 0.855 32 H 0.163 0.837 33 H 0.176 0.824 34 H 0.127 0.873 35 H 0.145 0.855 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.509 -7.764 2.632 8.214 hybrid contribution 1.731 1.826 -1.890 3.146 sum 2.240 -5.939 0.742 6.390 Atomic orbital electron populations 1.69447 1.06169 1.27522 1.48173 1.25003 0.94850 0.99719 0.92955 0.86447 0.79973 0.82422 0.78371 1.20285 1.20946 1.19685 1.21516 0.93754 0.90967 1.51963 0.91859 1.19490 0.90551 0.95066 0.84366 1.48622 1.09191 1.58537 1.12237 1.20928 0.78531 0.92226 1.05499 1.21846 0.98745 0.99981 0.93790 1.21596 0.94763 0.95581 0.97028 1.22059 1.00974 0.97048 1.00247 1.22628 0.97879 0.98855 0.88226 1.67690 1.12963 1.16557 1.23089 1.22977 0.91719 0.89177 1.00339 1.19313 0.87250 0.78319 0.83741 1.90603 1.62489 1.54686 1.36510 1.23716 1.00725 1.05360 0.96124 1.88050 0.99907 1.78942 1.28140 1.24460 0.96029 0.78542 0.90636 1.93085 1.94407 1.73301 1.56601 1.93105 1.84043 1.43271 1.96673 0.92045 0.93514 0.95434 0.91558 0.83491 0.84844 0.85501 0.83656 0.82366 0.87332 0.85500 0.83702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -20.83 9.66 55.43 0.54 -20.29 16 2 C 0.08 1.89 5.43 -17.82 -0.10 1.79 16 3 Si 0.90 19.11 29.54 -169.99 -5.02 14.09 16 4 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.54 -12.64 8.62 -34.44 -0.30 -12.94 16 8 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 9 C 0.22 4.76 5.17 -5.19 -0.03 4.73 16 10 N -0.56 -11.79 2.36 -176.43 -0.42 -12.20 16 11 C 0.15 3.12 4.66 -5.19 -0.02 3.10 16 12 C -0.14 -2.62 5.43 -104.48 -0.57 -3.18 16 13 C -0.06 -1.04 9.86 -39.27 -0.39 -1.42 16 14 C -0.18 -2.62 10.11 -39.44 -0.40 -3.02 16 15 C 0.08 1.23 11.18 -17.54 -0.20 1.03 16 16 N -0.49 -8.98 10.36 -13.26 -0.14 -9.11 16 17 C 0.11 2.19 10.37 -17.56 -0.18 2.01 16 18 C 0.53 11.22 7.56 -10.98 -0.08 11.14 16 19 O -0.56 -12.88 14.10 5.56 0.08 -12.80 16 20 C -0.11 -2.00 5.12 36.01 0.18 -1.82 16 21 S -0.17 -2.82 21.12 -107.50 -2.27 -5.09 16 22 C 0.27 3.41 5.91 101.05 0.60 4.00 16 23 F -0.19 -2.68 17.36 2.25 0.04 -2.64 16 24 F -0.19 -2.76 17.36 2.25 0.04 -2.72 16 25 H 0.27 6.23 8.32 -40.82 -0.34 5.89 16 26 H 0.05 1.01 8.02 -51.93 -0.42 0.60 16 27 H 0.03 0.54 6.66 -51.93 -0.35 0.19 16 28 H 0.07 1.45 7.62 -51.93 -0.40 1.05 16 29 H 0.15 3.20 5.19 -51.93 -0.27 2.93 16 30 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 31 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 32 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.16 3.17 7.06 -52.48 -0.37 2.80 16 34 H 0.11 1.87 7.05 -51.92 -0.37 1.50 16 35 H 0.13 2.42 7.63 -51.93 -0.40 2.03 16 36 H 0.15 1.25 8.14 -51.92 -0.42 0.82 16 LS Contribution 330.28 15.07 4.98 4.98 Total: -1.00 -26.74 330.28 -7.45 -34.19 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -3.80 Total: 6.18 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -1.48 Total: 5.42 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: -0.02 Total: -41.61 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.08 Total: -12.80 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.08 Total: -5.36 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -2.27 Total: -5.09 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.74 -7.45 -34.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294836156.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.708 kcal (2) G-P(sol) polarization free energy of solvation -26.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds