Wall clock time and date at job start Tue Mar 31 2020 11:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38251 * 119.95796 * 2 1 4 4 C 1.38126 * 120.08195 * 180.23586 * 3 2 1 5 5 C 1.38773 * 119.99247 * 359.48991 * 4 3 2 6 6 O 1.35901 * 120.04154 * 180.27990 * 5 4 3 7 7 S 1.52199 * 114.00064 * 90.00171 * 6 5 4 8 8 O 1.42094 * 104.27480 * 191.06921 * 7 6 5 9 9 O 1.42104 * 104.27717 * 318.92903 * 7 6 5 10 10 C 1.81399 * 104.44992 * 74.99964 * 7 6 5 11 11 C 1.52997 * 109.47334 * 180.02562 * 10 7 6 12 12 C 1.53004 * 109.46814 * 299.99831 * 11 10 7 13 13 C 1.53005 * 109.47298 * 59.99438 * 11 10 7 14 14 C 1.50694 * 109.47494 * 179.97438 * 11 10 7 15 15 H 1.08007 * 119.99994 * 359.97438 * 14 11 10 16 16 C 1.37873 * 120.00233 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00174 * 0.02562 * 16 14 11 18 18 Si 1.86807 * 120.00225 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.46634 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47142 * 120.00124 * 18 16 14 21 21 H 1.48503 * 109.46832 * 239.99877 * 18 16 14 22 22 C 1.38668 * 119.91606 * 0.25948 * 5 4 3 23 23 C 1.38390 * 119.91754 * 359.97438 * 22 5 4 24 24 F 1.35100 * 119.99532 * 180.02562 * 23 22 5 25 25 H 1.08994 * 109.47358 * 270.27585 * 1 2 3 26 26 H 1.09000 * 109.47310 * 30.27685 * 1 2 3 27 27 H 1.09002 * 109.47027 * 150.26970 * 1 2 3 28 28 H 1.08009 * 119.95930 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.00734 * 179.77435 * 4 3 2 30 30 H 1.09007 * 109.47167 * 299.99952 * 10 7 6 31 31 H 1.09001 * 109.47303 * 59.99822 * 10 7 6 32 32 H 1.09004 * 109.47172 * 60.00081 * 12 11 10 33 33 H 1.08997 * 109.47039 * 179.97438 * 12 11 10 34 34 H 1.09001 * 109.47079 * 299.99844 * 12 11 10 35 35 H 1.09007 * 109.46691 * 60.00482 * 13 11 10 36 36 H 1.09000 * 109.46973 * 180.02562 * 13 11 10 37 37 H 1.08998 * 109.46977 * 300.00927 * 13 11 10 38 38 H 0.96999 * 120.00411 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.04470 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1978 0.0000 4 6 3.5786 1.2008 -0.0049 5 6 4.2750 0.0004 0.0008 6 8 5.6340 0.0022 0.0017 7 16 6.2521 0.0091 1.3925 8 8 7.6290 0.2744 1.1627 9 8 5.4445 0.9161 2.1305 10 6 6.0227 -1.6853 1.9982 11 6 6.6096 -1.8076 3.4059 12 6 8.1032 -1.4781 3.3660 13 6 5.8966 -0.8302 4.3425 14 6 6.4185 -3.2150 3.9093 15 1 5.9272 -3.9489 3.2876 16 6 6.8709 -3.5660 5.1635 17 7 7.4688 -2.6723 5.9208 18 14 6.6347 -5.3109 5.7874 19 1 5.9388 -6.1166 4.7521 20 1 7.9591 -5.9159 6.0789 21 1 5.8177 -5.2869 7.0273 22 6 3.5823 -1.2009 0.0061 23 6 2.1984 -1.1997 0.0061 24 9 1.5221 -2.3692 0.0117 25 1 -0.3634 0.0049 1.0276 26 1 -0.3634 0.8875 -0.5181 27 1 -0.3633 -0.8924 -0.5096 28 1 1.6560 2.1324 -0.0004 29 1 4.1167 2.1372 -0.0086 30 1 4.9586 -1.9200 2.0270 31 1 6.5304 -2.3816 1.3308 32 1 8.2411 -0.4599 3.0021 33 1 8.5213 -1.5647 4.3689 34 1 8.6112 -2.1744 2.6988 35 1 4.8325 -1.0650 4.3709 36 1 6.3150 -0.9170 5.3452 37 1 6.0344 0.1879 3.9784 38 1 7.7868 -2.9190 6.8034 39 1 4.1222 -2.1363 0.0101 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296269491.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:36 Heat of formation + Delta-G solvation = -128.582214 kcal Electronic energy + Delta-G solvation = -25472.307024 eV Core-core repulsion = 21615.554929 eV Total energy + Delta-G solvation = -3856.752095 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.098 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.13222 -41.03387 -38.26407 -36.76761 -36.36427 -35.56180 -32.59331 -31.73200 -30.98545 -27.06795 -26.87921 -25.76647 -25.27500 -23.34831 -22.70913 -20.61945 -19.50284 -18.28901 -17.62413 -17.34717 -16.28047 -16.17777 -15.92153 -15.85984 -15.62794 -14.84370 -14.71065 -14.18953 -13.95671 -13.66983 -13.32583 -13.14821 -13.12546 -12.66993 -12.57867 -12.32244 -12.21944 -11.93684 -11.85541 -11.60239 -11.51134 -11.18938 -11.12320 -10.99720 -10.78274 -10.40905 -10.34571 -10.14402 -9.71073 -9.59840 -9.26729 -8.86726 -8.70966 -8.43792 -6.07022 -4.18978 0.25447 0.83416 1.01321 2.40999 3.13331 3.23361 3.31953 3.34695 3.89786 4.06924 4.31738 4.34305 4.39322 4.44190 4.61828 4.79244 4.95025 5.18590 5.24454 5.31316 5.46412 5.55872 5.58779 5.65782 5.70502 5.85951 5.96542 6.03132 6.27662 6.55225 6.64312 6.73925 6.84495 6.98389 7.26491 7.45346 7.64583 7.93706 8.04799 8.28269 8.79471 9.46762 10.94506 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.015031 B = 0.005009 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.429497 B = 5588.989106 C = 6792.767848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.109 4.109 3 C -0.076 4.076 4 C -0.099 4.099 5 C 0.103 3.897 6 O -0.676 6.676 7 S 2.573 3.427 8 O -0.931 6.931 9 O -0.955 6.955 10 C -0.604 4.604 11 C 0.085 3.915 12 C -0.165 4.165 13 C -0.164 4.164 14 C -0.502 4.502 15 H 0.060 0.940 16 C 0.065 3.935 17 N -0.883 5.883 18 Si 0.896 3.104 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.163 4.163 23 C 0.117 3.883 24 F -0.127 7.127 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.027 0.973 33 H 0.097 0.903 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.096 0.904 37 H 0.028 0.972 38 H 0.262 0.738 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.964 6.036 -12.025 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.111 4.111 3 C -0.095 4.095 4 C -0.119 4.119 5 C 0.062 3.938 6 O -0.634 6.634 7 S 2.674 3.326 8 O -0.929 6.929 9 O -0.953 6.953 10 C -0.736 4.736 11 C 0.083 3.917 12 C -0.223 4.223 13 C -0.222 4.222 14 C -0.541 4.541 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.521 5.521 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.184 4.184 23 C 0.098 3.902 24 F -0.106 7.106 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.165 0.835 29 H 0.164 0.836 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.045 0.955 33 H 0.116 0.884 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.115 0.885 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.563 6.731 -12.088 18.031 hybrid contribution -0.003 -1.940 0.530 2.011 sum -11.566 4.791 -11.558 17.038 Atomic orbital electron populations 1.20781 0.89392 1.03627 1.03425 1.20132 0.97662 0.91730 1.01548 1.20814 0.92743 0.97706 0.98194 1.21369 0.94713 0.97546 0.98255 1.17607 0.77300 0.93833 1.05104 1.85771 1.25437 1.92664 1.59522 1.06230 0.74733 0.79378 0.72273 1.93594 1.32078 1.84944 1.82269 1.93593 1.68997 1.61993 1.70737 1.30809 1.10519 1.20185 1.12049 1.17926 0.91970 0.97853 0.83972 1.22296 0.97807 0.97525 1.04650 1.22283 0.99533 0.95513 1.04824 1.20959 1.38517 0.93938 1.00694 0.92202 1.24930 0.94762 0.97402 0.96583 1.69803 1.38884 1.33244 1.10183 0.86470 0.77907 0.84418 0.78807 1.19826 1.20902 1.20920 1.21320 0.93569 0.99140 1.04384 1.17019 0.88724 0.81436 1.03031 1.91529 1.79698 1.45614 1.93720 0.90127 0.90552 0.90861 0.83452 0.83561 0.86102 0.85670 0.95467 0.88415 0.94284 0.94415 0.88498 0.95288 0.92743 0.82627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.83 36.01 0.35 -0.50 16 2 C -0.11 -1.13 5.89 -104.53 -0.62 -1.75 16 3 C -0.08 -0.76 9.69 -39.62 -0.38 -1.14 16 4 C -0.10 -1.24 9.05 -39.42 -0.36 -1.60 16 5 C 0.10 1.53 4.80 -39.23 -0.19 1.34 16 6 O -0.68 -11.21 10.05 -51.75 -0.52 -11.73 16 7 S 2.57 49.72 4.20 -107.50 -0.45 49.27 16 8 O -0.93 -20.39 15.71 -67.04 -1.05 -21.45 16 9 O -0.95 -19.31 13.88 -67.04 -0.93 -20.24 16 10 C -0.60 -11.93 4.40 37.16 0.16 -11.77 16 11 C 0.08 2.04 0.52 -155.66 -0.08 1.96 16 12 C -0.17 -4.05 7.78 37.16 0.29 -3.76 16 13 C -0.16 -3.97 7.77 37.16 0.29 -3.68 16 14 C -0.50 -13.08 8.01 -34.44 -0.28 -13.35 16 15 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 16 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 17 N -0.88 -23.87 9.35 55.43 0.52 -23.35 16 18 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 C -0.16 -2.21 8.44 -39.37 -0.33 -2.54 16 23 C 0.12 1.45 7.24 -39.44 -0.29 1.17 16 24 F -0.13 -1.59 16.47 2.25 0.04 -1.55 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 27 H 0.07 0.53 7.64 -51.93 -0.40 0.13 16 28 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 29 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.12 2.16 6.60 -51.92 -0.34 1.81 16 31 H 0.12 2.23 8.14 -51.92 -0.42 1.81 16 32 H 0.03 0.63 5.47 -51.93 -0.28 0.35 16 33 H 0.10 2.57 6.07 -51.93 -0.32 2.25 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.10 2.53 6.07 -51.93 -0.32 2.22 16 37 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 38 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 39 H 0.16 1.89 7.49 -52.49 -0.39 1.50 16 LS Contribution 326.71 15.07 4.92 4.92 Total: -1.00 -30.95 326.71 -8.84 -39.79 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -4.83 Total: 2.79 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: -1.51 Total: -33.99 kcal Atomic # 7 Polarization: -23.87 SS G_CDS: 0.52 Total: -23.35 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -2.50 Total: -53.41 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 49.72 SS G_CDS: -0.45 Total: 49.27 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.95 -8.84 -39.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296269491.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.788 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds