Wall clock time and date at job start Tue Mar 31 2020 11:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38251 * 119.95796 * 2 1 4 4 C 1.38126 * 120.08195 * 180.23586 * 3 2 1 5 5 C 1.38773 * 119.99247 * 359.48991 * 4 3 2 6 6 O 1.35901 * 120.04154 * 180.27990 * 5 4 3 7 7 S 1.52199 * 114.00064 * 90.00171 * 6 5 4 8 8 O 1.42094 * 104.27480 * 191.06921 * 7 6 5 9 9 O 1.42104 * 104.27717 * 318.92903 * 7 6 5 10 10 C 1.81399 * 104.44992 * 74.99964 * 7 6 5 11 11 C 1.52997 * 109.47334 * 180.02562 * 10 7 6 12 12 C 1.53004 * 109.46814 * 299.99831 * 11 10 7 13 13 C 1.53005 * 109.47298 * 59.99438 * 11 10 7 14 14 C 1.50694 * 109.47494 * 179.97438 * 11 10 7 15 15 H 1.08007 * 119.99994 * 359.97438 * 14 11 10 16 16 C 1.37873 * 120.00233 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00174 * 0.02562 * 16 14 11 18 18 Si 1.86807 * 120.00225 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.46634 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47142 * 120.00124 * 18 16 14 21 21 H 1.48503 * 109.46832 * 239.99877 * 18 16 14 22 22 C 1.38668 * 119.91606 * 0.25948 * 5 4 3 23 23 C 1.38390 * 119.91754 * 359.97438 * 22 5 4 24 24 F 1.35100 * 119.99532 * 180.02562 * 23 22 5 25 25 H 1.08994 * 109.47358 * 270.27585 * 1 2 3 26 26 H 1.09000 * 109.47310 * 30.27685 * 1 2 3 27 27 H 1.09002 * 109.47027 * 150.26970 * 1 2 3 28 28 H 1.08009 * 119.95930 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.00734 * 179.77435 * 4 3 2 30 30 H 1.09007 * 109.47167 * 299.99952 * 10 7 6 31 31 H 1.09001 * 109.47303 * 59.99822 * 10 7 6 32 32 H 1.09004 * 109.47172 * 60.00081 * 12 11 10 33 33 H 1.08997 * 109.47039 * 179.97438 * 12 11 10 34 34 H 1.09001 * 109.47079 * 299.99844 * 12 11 10 35 35 H 1.09007 * 109.46691 * 60.00482 * 13 11 10 36 36 H 1.09000 * 109.46973 * 180.02562 * 13 11 10 37 37 H 1.08998 * 109.46977 * 300.00927 * 13 11 10 38 38 H 0.96999 * 120.00411 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.04470 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1978 0.0000 4 6 3.5786 1.2008 -0.0049 5 6 4.2750 0.0004 0.0008 6 8 5.6340 0.0022 0.0017 7 16 6.2521 0.0091 1.3925 8 8 7.6290 0.2744 1.1627 9 8 5.4445 0.9161 2.1305 10 6 6.0227 -1.6853 1.9982 11 6 6.6096 -1.8076 3.4059 12 6 8.1032 -1.4781 3.3660 13 6 5.8966 -0.8302 4.3425 14 6 6.4185 -3.2150 3.9093 15 1 5.9272 -3.9489 3.2876 16 6 6.8709 -3.5660 5.1635 17 7 7.4688 -2.6723 5.9208 18 14 6.6347 -5.3109 5.7874 19 1 5.9388 -6.1166 4.7521 20 1 7.9591 -5.9159 6.0789 21 1 5.8177 -5.2869 7.0273 22 6 3.5823 -1.2009 0.0061 23 6 2.1984 -1.1997 0.0061 24 9 1.5221 -2.3692 0.0117 25 1 -0.3634 0.0049 1.0276 26 1 -0.3634 0.8875 -0.5181 27 1 -0.3633 -0.8924 -0.5096 28 1 1.6560 2.1324 -0.0004 29 1 4.1167 2.1372 -0.0086 30 1 4.9586 -1.9200 2.0270 31 1 6.5304 -2.3816 1.3308 32 1 8.2411 -0.4599 3.0021 33 1 8.5213 -1.5647 4.3689 34 1 8.6112 -2.1744 2.6988 35 1 4.8325 -1.0650 4.3709 36 1 6.3150 -0.9170 5.3452 37 1 6.0344 0.1879 3.9784 38 1 7.7868 -2.9190 6.8034 39 1 4.1222 -2.1363 0.0101 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296269491.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:35 Heat of formation + Delta-G solvation = -146.530779 kcal Electronic energy + Delta-G solvation = -25473.085332 eV Core-core repulsion = 21615.554929 eV Total energy + Delta-G solvation = -3857.530403 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.07310 -42.19683 -39.26458 -38.34644 -38.19463 -37.17238 -33.73342 -33.37866 -31.90862 -28.56899 -27.88241 -27.71917 -27.27969 -24.28239 -23.73483 -21.86693 -21.22953 -19.60113 -19.03590 -18.52708 -17.96594 -17.31222 -17.28934 -16.87239 -16.80200 -16.62063 -16.07964 -15.34113 -15.01039 -14.90180 -14.80283 -14.48040 -14.36963 -14.09976 -14.02413 -13.92504 -13.30073 -13.15475 -13.09063 -12.95385 -12.82372 -12.77695 -12.73506 -12.55430 -12.37644 -12.24379 -12.16012 -12.01131 -11.61280 -11.42761 -10.66605 -10.43902 -10.16422 -9.76267 -8.05407 -6.23704 -1.07347 -0.10239 -0.07940 1.07174 1.41886 1.45221 1.54537 2.22403 2.41681 2.54086 2.88296 3.03674 3.17745 3.51619 3.60598 3.63731 3.80718 3.91270 4.00322 4.13309 4.50567 4.54328 4.71472 4.78170 4.79730 4.80046 4.82413 4.85250 4.93288 5.02843 5.06712 5.19422 5.20086 5.34275 5.48253 5.62894 5.66389 5.95087 6.07783 6.31095 6.80180 7.44626 8.94949 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.015031 B = 0.005009 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.429497 B = 5588.989106 C = 6792.767848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.097 4.097 3 C -0.067 4.067 4 C -0.107 4.107 5 C 0.061 3.939 6 O -0.668 6.668 7 S 2.595 3.405 8 O -0.963 6.963 9 O -0.967 6.967 10 C -0.609 4.609 11 C 0.073 3.927 12 C -0.162 4.162 13 C -0.159 4.159 14 C -0.517 4.517 15 H 0.062 0.938 16 C 0.020 3.980 17 N -0.906 5.906 18 Si 0.954 3.046 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.282 1.282 22 C -0.174 4.174 23 C 0.101 3.899 24 F -0.131 7.131 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.073 0.927 28 H 0.190 0.810 29 H 0.156 0.844 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.262 0.738 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.290 6.324 -13.005 20.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.099 4.099 3 C -0.085 4.085 4 C -0.127 4.127 5 C 0.019 3.981 6 O -0.627 6.627 7 S 2.695 3.305 8 O -0.961 6.961 9 O -0.965 6.965 10 C -0.739 4.739 11 C 0.071 3.929 12 C -0.220 4.220 13 C -0.217 4.217 14 C -0.556 4.556 15 H 0.080 0.920 16 C -0.179 4.179 17 N -0.544 5.544 18 Si 0.780 3.220 19 H -0.192 1.192 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.194 4.194 23 C 0.081 3.919 24 F -0.109 7.109 25 H 0.107 0.893 26 H 0.123 0.877 27 H 0.092 0.908 28 H 0.208 0.792 29 H 0.174 0.826 30 H 0.156 0.844 31 H 0.159 0.841 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.881 7.008 -13.064 20.309 hybrid contribution 0.574 -1.979 0.752 2.194 sum -13.308 5.029 -12.312 18.814 Atomic orbital electron populations 1.20924 0.86914 1.05163 1.04347 1.20598 0.99437 0.90989 0.98848 1.21300 0.91682 0.99265 0.96237 1.21728 0.96104 0.97197 0.97682 1.18027 0.76292 0.95290 1.08486 1.85730 1.27017 1.92566 1.57353 1.05483 0.73925 0.78660 0.72401 1.93545 1.34214 1.85236 1.83134 1.93553 1.69055 1.62219 1.71717 1.30736 1.11576 1.21692 1.09889 1.17910 0.91691 0.96986 0.86315 1.22240 0.98513 0.97974 1.03304 1.22200 0.99548 0.96210 1.03722 1.21276 1.38391 0.95004 1.00951 0.92013 1.25638 0.94694 1.00655 0.96946 1.69932 1.39464 1.34712 1.10341 0.85567 0.77666 0.80528 0.78227 1.19187 1.20901 1.20799 1.21440 0.94358 0.99084 1.04552 1.17240 0.88518 0.82169 1.03928 1.91519 1.79596 1.45969 1.93846 0.89296 0.87678 0.90778 0.79249 0.82608 0.84393 0.84070 0.94910 0.90592 0.94081 0.94030 0.90804 0.94489 0.92821 0.82262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.83 71.24 0.70 -0.57 16 2 C -0.10 -1.71 5.89 -19.81 -0.12 -1.82 16 3 C -0.07 -1.09 9.69 22.25 0.22 -0.88 16 4 C -0.11 -2.47 9.05 22.37 0.20 -2.27 16 5 C 0.06 1.72 4.80 22.50 0.11 1.83 16 6 O -0.67 -21.81 10.05 -61.53 -0.62 -22.43 16 7 S 2.59 99.42 4.20 -56.49 -0.24 99.18 16 8 O -0.96 -42.39 15.71 -118.57 -1.86 -44.25 16 9 O -0.97 -38.52 13.88 -118.57 -1.65 -40.17 16 10 C -0.61 -23.75 4.40 71.98 0.32 -23.43 16 11 C 0.07 3.51 0.52 -52.93 -0.03 3.49 16 12 C -0.16 -8.10 7.78 71.98 0.56 -7.54 16 13 C -0.16 -7.76 7.77 71.98 0.56 -7.20 16 14 C -0.52 -26.89 8.01 25.60 0.21 -26.68 16 15 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 16 C 0.02 1.07 5.15 84.65 0.44 1.51 16 17 N -0.91 -49.68 9.35 21.45 0.20 -49.48 16 18 Si 0.95 42.07 29.54 68.60 2.03 44.09 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 C -0.17 -4.52 8.44 22.41 0.19 -4.33 16 23 C 0.10 2.32 7.24 22.36 0.16 2.49 16 24 F -0.13 -3.08 16.47 44.97 0.74 -2.34 16 25 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.10 0.57 8.09 -2.39 -0.02 0.55 16 27 H 0.07 0.83 7.64 -2.39 -0.02 0.81 16 28 H 0.19 1.42 8.06 -2.91 -0.02 1.40 16 29 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 30 H 0.14 4.82 6.60 -2.39 -0.02 4.81 16 31 H 0.14 4.95 8.14 -2.39 -0.02 4.93 16 32 H 0.03 1.55 5.47 -2.39 -0.01 1.54 16 33 H 0.08 4.10 6.07 -2.39 -0.01 4.08 16 34 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16 37 H 0.04 1.69 5.46 -2.39 -0.01 1.68 16 38 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 39 H 0.16 3.81 7.49 -2.91 -0.02 3.79 16 Total: -1.00 -66.58 326.71 3.19 -63.39 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 1.07 Total: 17.40 kcal Atomic # 6 Polarization: -68.91 SS G_CDS: 3.51 Total: -65.40 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.20 Total: -49.48 kcal Atomic # 8 Polarization: -102.72 SS G_CDS: -4.13 Total: -106.85 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.74 Total: -2.34 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 16 Polarization: 99.42 SS G_CDS: -0.24 Total: 99.18 kcal Total: -66.58 3.19 -63.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296269491.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.139 kcal (2) G-P(sol) polarization free energy of solvation -66.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds