Wall clock time and date at job start Tue Mar 31 2020 10:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38260 * 119.44625 * 2 1 4 4 C 1.38555 * 119.28797 * 179.97438 * 3 2 1 5 5 Cl 1.73603 * 120.87348 * 180.02562 * 4 3 2 6 6 C 1.40206 * 118.25011 * 359.72698 * 4 3 2 7 7 C 1.47741 * 120.57141 * 180.28374 * 6 4 3 8 8 O 1.21574 * 120.00178 * 0.25355 * 7 6 4 9 9 N 1.34779 * 119.99603 * 180.24450 * 7 6 4 10 10 C 1.39861 * 119.99931 * 174.88906 * 9 7 6 11 11 C 1.39315 * 119.94675 * 325.55116 * 10 9 7 12 12 C 1.38488 * 120.42206 * 179.71877 * 11 10 9 13 13 C 1.37682 * 120.32689 * 0.55237 * 12 11 10 14 14 C 1.40748 * 119.88752 * 359.72511 * 13 12 11 15 15 C 1.41412 * 120.21015 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99848 * 25.13338 * 15 14 13 17 17 C 1.39925 * 120.00146 * 205.12974 * 15 14 13 18 18 N 1.30838 * 119.99944 * 16.80270 * 17 15 14 19 19 Si 1.86794 * 120.00198 * 196.79835 * 17 15 14 20 20 H 1.48500 * 109.47052 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.47241 * 120.00178 * 19 17 15 22 22 H 1.48505 * 109.47520 * 239.99923 * 19 17 15 23 23 C 1.38252 * 119.95185 * 145.82123 * 10 9 7 24 24 C 1.39527 * 118.85029 * 0.53025 * 6 4 3 25 25 N 1.31677 * 120.57755 * 359.45975 * 24 6 4 26 26 H 1.08997 * 109.47348 * 270.02636 * 1 2 3 27 27 H 1.09002 * 109.46834 * 30.02554 * 1 2 3 28 28 H 1.08998 * 109.47173 * 150.02457 * 1 2 3 29 29 H 1.07994 * 120.35678 * 359.95188 * 3 2 1 30 30 H 0.96997 * 120.00242 * 354.90051 * 9 7 6 31 31 H 1.07994 * 119.78678 * 359.97438 * 11 10 9 32 32 H 1.07996 * 119.83436 * 180.25733 * 12 11 10 33 33 H 1.07997 * 120.05986 * 179.74267 * 13 12 11 34 34 H 0.96998 * 119.99701 * 179.97438 * 18 17 15 35 35 H 1.08007 * 120.16111 * 359.97438 * 23 10 9 36 36 H 1.08004 * 119.70864 * 179.73245 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1866 1.2040 0.0000 4 6 3.5722 1.2002 0.0005 5 17 4.4671 2.6877 0.0012 6 6 4.2324 -0.0367 0.0070 7 6 5.7084 -0.1006 0.0141 8 8 6.3612 0.9250 0.0192 9 7 6.3311 -1.2959 0.0153 10 6 7.7246 -1.3585 -0.0859 11 6 8.4085 -0.4230 -0.8591 12 6 9.7887 -0.4723 -0.9615 13 6 10.4996 -1.4542 -0.3086 14 6 9.8218 -2.4096 0.4716 15 6 10.5452 -3.4207 1.1454 16 1 11.5790 -3.2583 1.4124 17 6 9.9217 -4.6315 1.4663 18 7 8.8042 -4.9687 0.8752 19 14 10.6846 -5.7666 2.7386 20 1 11.9371 -5.1594 3.2560 21 1 9.7313 -5.9653 3.8599 22 1 10.9915 -7.0775 2.1119 23 6 8.4209 -2.3520 0.5771 24 6 3.4713 -1.2061 0.0012 25 7 2.1558 -1.1492 0.0006 26 1 -0.3634 0.0005 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 1.6434 2.1374 -0.0008 30 1 5.8128 -2.1127 0.0861 31 1 7.8592 0.3480 -1.3787 32 1 10.3096 0.2602 -1.5602 33 1 11.5755 -1.4910 -0.3948 34 1 8.3722 -5.8082 1.0974 35 1 7.8913 -3.0802 1.1737 36 1 3.9656 -2.1664 0.0016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313445163.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:21 Heat of formation + Delta-G solvation = 1.915403 kcal Electronic energy + Delta-G solvation = -22593.516443 eV Core-core repulsion = 19067.608324 eV Total energy + Delta-G solvation = -3525.908119 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.97180 -40.69074 -38.94136 -37.78203 -36.05838 -35.20839 -34.11664 -33.32187 -31.47688 -30.57867 -28.77249 -27.16993 -25.14421 -24.36835 -23.13705 -22.63296 -21.40683 -19.37382 -19.30252 -18.15566 -17.51819 -17.08975 -16.66655 -16.50902 -16.30581 -16.14499 -15.51313 -15.06440 -14.90224 -14.82517 -14.46765 -14.17194 -13.75552 -13.51081 -13.44584 -13.15549 -13.06400 -12.98350 -12.81486 -12.63961 -12.48839 -12.19483 -11.76861 -11.58181 -11.20263 -11.06169 -10.87000 -10.65158 -10.49434 -10.24787 -9.32888 -8.87031 -8.55100 -6.34766 -0.68014 -0.18720 0.82854 0.86534 1.04560 1.41430 1.50488 1.55567 1.78239 2.03452 2.23271 2.52705 2.76834 3.00969 3.38494 3.52125 3.64097 3.72494 3.99798 4.18524 4.40768 4.44944 4.61901 4.72182 4.80312 4.84108 4.88678 5.04613 5.08381 5.14834 5.20297 5.35849 5.39989 5.75856 5.83095 6.02675 6.08916 6.31855 6.51154 6.62813 6.69452 6.94389 6.96468 7.14735 8.34998 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.003464 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.226490 B = 8080.137914 C = 9356.633140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.164 3.836 3 C -0.166 4.166 4 C 0.046 3.954 5 Cl -0.027 7.027 6 C -0.205 4.205 7 C 0.550 3.450 8 O -0.530 6.530 9 N -0.653 5.653 10 C 0.153 3.847 11 C -0.236 4.236 12 C -0.084 4.084 13 C -0.247 4.247 14 C 0.092 3.908 15 C -0.497 4.497 16 H 0.075 0.925 17 C 0.039 3.961 18 N -0.820 5.820 19 Si 0.980 3.020 20 H -0.262 1.262 21 H -0.264 1.264 22 H -0.265 1.265 23 C -0.199 4.199 24 C 0.160 3.840 25 N -0.497 5.497 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.184 0.816 30 H 0.414 0.586 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.289 0.711 35 H 0.115 0.885 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.362 6.486 -0.557 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.027 3.973 3 C -0.186 4.186 4 C 0.010 3.990 5 Cl 0.003 6.997 6 C -0.211 4.211 7 C 0.338 3.662 8 O -0.407 6.407 9 N -0.299 5.299 10 C 0.060 3.940 11 C -0.257 4.257 12 C -0.102 4.102 13 C -0.267 4.267 14 C 0.089 3.911 15 C -0.526 4.526 16 H 0.093 0.907 17 C -0.176 4.176 18 N -0.446 5.446 19 Si 0.801 3.199 20 H -0.186 1.186 21 H -0.189 1.189 22 H -0.190 1.190 23 C -0.221 4.221 24 C 0.001 3.999 25 N -0.207 5.207 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.104 0.896 29 H 0.201 0.799 30 H 0.251 0.749 31 H 0.121 0.879 32 H 0.137 0.863 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.133 0.867 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -18.517 6.412 -0.598 19.605 hybrid contribution 1.159 -0.060 0.406 1.230 sum -17.358 6.353 -0.191 18.485 Atomic orbital electron populations 1.20974 0.84605 1.05551 1.05078 1.22256 0.99458 0.86705 0.88844 1.22267 0.90629 1.02285 1.03410 1.21675 0.93468 0.87778 0.96034 1.98441 1.75338 1.30313 1.95647 1.20741 0.93551 0.95168 1.11660 1.18321 0.87437 0.83560 0.76853 1.90844 1.67161 1.34044 1.48665 1.43281 1.05728 1.08923 1.71930 1.17590 0.81740 0.97309 0.97394 1.20459 0.94394 1.03319 1.07578 1.20717 0.93543 0.97381 0.98605 1.21223 0.98675 1.01337 1.05477 1.17761 0.92076 0.91734 0.89486 1.19799 0.99080 0.99185 1.34550 0.90673 1.26671 0.94922 0.99527 0.96509 1.69844 1.17135 1.22665 1.34973 0.85187 0.79283 0.77424 0.77983 1.18573 1.18889 1.18998 1.21014 0.94725 1.01235 1.05105 1.23245 0.89389 0.97235 0.90040 1.67677 1.08931 1.30008 1.14093 0.88063 0.87505 0.89612 0.79851 0.74856 0.87856 0.86312 0.88082 0.90027 0.86723 0.80124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.16 71.23 0.72 -0.16 16 2 C 0.16 2.82 6.78 42.54 0.29 3.11 16 3 C -0.17 -2.94 9.54 22.35 0.21 -2.72 16 4 C 0.05 1.17 6.40 22.82 0.15 1.32 16 5 Cl -0.03 -0.76 26.25 -2.72 -0.07 -0.83 16 6 C -0.20 -5.90 5.89 -19.98 -0.12 -6.02 16 7 C 0.55 20.30 7.50 86.76 0.65 20.96 16 8 O -0.53 -22.78 11.89 -3.95 -0.05 -22.82 16 9 N -0.65 -24.90 5.28 -306.32 -1.62 -26.52 16 10 C 0.15 7.21 6.25 38.12 0.24 7.45 16 11 C -0.24 -11.33 8.66 22.59 0.20 -11.13 16 12 C -0.08 -3.94 10.02 22.20 0.22 -3.72 16 13 C -0.25 -12.53 9.79 22.75 0.22 -12.31 16 14 C 0.09 5.02 5.57 -21.30 -0.12 4.91 16 15 C -0.50 -26.63 9.05 23.46 0.21 -26.41 16 16 H 0.08 3.93 7.90 -2.91 -0.02 3.90 16 17 C 0.04 1.92 5.16 85.25 0.44 2.35 16 18 N -0.82 -40.94 10.94 21.82 0.24 -40.70 16 19 Si 0.98 37.49 29.59 68.60 2.03 39.52 16 20 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 21 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 22 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 23 C -0.20 -10.31 8.60 22.85 0.20 -10.12 16 24 C 0.16 3.85 10.71 85.03 0.91 4.76 16 25 N -0.50 -10.95 10.25 -182.87 -1.87 -12.82 16 26 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.11 0.38 8.07 -2.39 -0.02 0.36 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 30 H 0.41 13.13 6.90 -92.71 -0.64 12.49 16 31 H 0.10 4.88 6.47 -2.91 -0.02 4.86 16 32 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 33 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 34 H 0.29 12.89 8.30 -92.71 -0.77 12.12 16 35 H 0.11 6.01 6.17 -2.91 -0.02 5.99 16 36 H 0.18 3.71 6.44 -2.91 -0.02 3.69 16 Total: -1.00 -66.51 326.31 3.59 -62.92 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: 0.51 Total: 29.01 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 4.42 Total: -27.74 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -3.25 Total: -80.05 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.05 Total: -22.82 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.07 Total: -0.83 kcal Total: -66.51 3.59 -62.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313445163.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.837 kcal (2) G-P(sol) polarization free energy of solvation -66.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds