Wall clock time and date at job start Tue Mar 31 2020 10:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81001 * 109.46877 * 2 1 4 4 C 1.76205 * 99.99797 * 180.02562 * 3 2 1 5 5 N 1.28559 * 124.99575 * 359.97385 * 4 3 2 6 6 N 1.37788 * 116.19366 * 179.97438 * 5 4 3 7 7 H 0.96998 * 122.73789 * 179.97438 * 6 5 4 8 8 C 1.33901 * 114.52386 * 359.97438 * 6 5 4 9 9 N 1.32895 * 125.66760 * 179.97438 * 8 6 5 10 10 C 1.34222 * 120.00535 * 180.02562 * 9 8 6 11 11 O 1.35365 * 120.00378 * 180.02562 * 10 9 8 12 12 N 1.31074 * 119.99706 * 359.97438 * 10 9 8 13 13 C 1.46503 * 120.00138 * 185.35436 * 12 10 9 14 14 H 1.09001 * 109.46892 * 5.42806 * 13 12 10 15 15 C 1.50702 * 109.47261 * 245.43558 * 13 12 10 16 16 H 1.07998 * 119.99906 * 359.97438 * 15 13 12 17 17 C 1.37879 * 120.00063 * 180.02562 * 15 13 12 18 18 N 1.31511 * 120.00010 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 119.99991 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47425 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47485 * 119.99953 * 19 17 15 22 22 H 1.48500 * 109.47090 * 239.99834 * 19 17 15 23 23 C 1.52990 * 109.47219 * 125.42975 * 13 12 10 24 24 C 1.52996 * 109.47470 * 295.00273 * 23 13 12 25 25 S 1.75923 * 124.99935 * 180.27912 * 4 3 2 26 26 H 1.08996 * 109.47317 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47330 * 300.00037 * 1 2 3 28 28 H 1.08998 * 109.47295 * 60.00155 * 1 2 3 29 29 H 1.08999 * 109.46830 * 239.99864 * 2 1 3 30 30 H 1.08996 * 109.46789 * 119.99935 * 2 1 3 31 31 H 0.96702 * 114.00022 * 354.98497 * 11 10 9 32 32 H 0.96996 * 120.00104 * 180.02562 * 18 17 15 33 33 H 1.09001 * 109.47535 * 55.00437 * 23 13 12 34 34 H 1.09001 * 109.47492 * 175.00257 * 23 13 12 35 35 H 1.09001 * 109.47075 * 299.99808 * 24 23 13 36 36 H 1.09001 * 109.47254 * 59.99776 * 24 23 13 37 37 H 1.09002 * 109.47677 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1333 1.7065 0.0000 4 6 3.8713 1.4166 -0.0008 5 7 4.4253 0.2565 -0.0007 6 7 5.8031 0.2404 -0.0019 7 1 6.3181 -0.5816 -0.0016 8 6 6.3730 1.4520 -0.0036 9 7 7.6798 1.6936 -0.0045 10 6 8.1285 2.9586 -0.0057 11 8 9.4596 3.2047 -0.0071 12 7 7.2778 3.9557 -0.0064 13 6 7.7632 5.3328 -0.1260 14 1 8.8392 5.3249 -0.3000 15 6 7.4659 6.0827 1.1470 16 1 6.9650 5.5835 1.9633 17 6 7.8323 7.4062 1.2691 18 7 8.4418 8.0142 0.2749 19 14 7.4632 8.3358 2.8467 20 1 6.7754 7.4328 3.8040 21 1 8.7334 8.8183 3.4458 22 1 6.5867 9.4958 2.5441 23 6 7.0619 6.0207 -1.2988 24 6 7.4632 5.3350 -2.6063 25 16 5.1037 2.6720 0.0059 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 10.0065 2.4109 0.0700 32 1 8.6999 8.9452 0.3609 33 1 5.9820 5.9504 -1.1683 34 1 7.3561 7.0697 -1.3335 35 1 8.5431 5.4054 -2.7369 36 1 7.1690 4.2861 -2.5717 37 1 6.9632 5.8248 -3.4419 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331066971.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:38 Heat of formation + Delta-G solvation = 48.241529 kcal Electronic energy + Delta-G solvation = -21727.904779 eV Core-core repulsion = 18373.785920 eV Total energy + Delta-G solvation = -3354.118858 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.077 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.90867 -38.47832 -35.21933 -34.90760 -33.19322 -32.10177 -31.48851 -30.07635 -26.75898 -25.28235 -24.01196 -22.99254 -22.37238 -21.09681 -19.51286 -19.13430 -17.59050 -16.76470 -16.54406 -16.06761 -15.66859 -15.47434 -15.13462 -15.03799 -14.23808 -14.02961 -13.22311 -12.81562 -12.77860 -12.61506 -12.43392 -12.22137 -12.10536 -12.07372 -11.62682 -11.19104 -10.95161 -10.87368 -10.79172 -10.50597 -10.26713 -10.18476 -10.06639 -9.66501 -9.40485 -9.33437 -8.65443 -8.42779 -8.05420 -8.03384 -7.26025 -5.95384 -4.01243 0.81570 1.08185 1.17064 1.54777 1.65583 1.94088 2.77053 3.32725 3.40018 3.45363 3.82302 4.24725 4.47751 4.59318 4.60677 4.85693 5.05269 5.32897 5.42282 5.43547 5.48513 5.71108 5.88979 6.32580 6.36766 6.58140 6.77217 7.00941 7.11844 7.24890 7.41325 7.59381 7.76036 7.92313 8.09844 8.39996 8.54045 8.84191 9.09168 9.62960 11.09414 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.004103 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.352198 B = 6821.814271 C = 7724.439501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 S 0.032 5.968 4 C -0.050 4.050 5 N -0.247 5.247 6 N -0.491 5.491 7 H 0.444 0.556 8 C 0.353 3.647 9 N -0.573 5.573 10 C 0.480 3.520 11 O -0.479 6.479 12 N -0.559 5.559 13 C 0.225 3.775 14 H 0.029 0.971 15 C -0.500 4.500 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.896 3.104 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.283 1.283 23 C -0.107 4.107 24 C -0.143 4.143 25 S 0.279 5.721 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.389 0.611 32 H 0.260 0.740 33 H 0.039 0.961 34 H 0.099 0.901 35 H 0.040 0.960 36 H 0.032 0.968 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.080 -16.793 -2.386 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.273 4.273 3 S 0.258 5.742 4 C -0.456 4.456 5 N -0.070 5.070 6 N -0.222 5.222 7 H 0.291 0.709 8 C -0.032 4.032 9 N -0.322 5.322 10 C 0.161 3.839 11 O -0.269 6.269 12 N -0.303 5.303 13 C 0.117 3.883 14 H 0.047 0.953 15 C -0.539 4.539 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.724 3.276 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.209 1.209 23 C -0.146 4.146 24 C -0.200 4.200 25 S 0.508 5.492 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.241 0.759 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.117 0.883 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -12.891 -14.820 -2.432 19.792 hybrid contribution 1.943 -1.622 0.854 2.672 sum -10.947 -16.442 -1.578 19.816 Atomic orbital electron populations 1.21564 0.91850 1.03204 1.03335 1.23608 1.00154 0.96621 1.06936 1.85987 0.86870 1.10128 1.91223 1.30721 1.08538 1.01688 1.04634 1.74534 0.89613 1.21247 1.21562 1.45399 1.01631 1.06740 1.68383 0.70939 1.25157 0.94550 0.89723 0.93756 1.68161 1.07818 1.19714 1.36533 1.20873 0.81994 0.87767 0.93258 1.85309 1.14800 1.36703 1.90119 1.71352 1.29653 1.04856 1.24435 1.19053 0.94580 0.80009 0.94633 0.95302 1.21162 1.37901 0.95497 0.99336 0.92373 1.24913 0.95138 0.97407 0.96635 1.69891 1.40606 1.11615 1.30900 0.86465 0.77929 0.79735 0.83457 1.19793 1.21112 1.20910 1.21598 0.98665 1.02571 0.91753 1.21788 1.00038 0.99318 0.98885 1.88889 0.86909 0.97603 1.75839 0.90631 0.91439 0.91444 0.88781 0.88774 0.75906 0.92995 0.94212 0.88303 0.94111 0.94844 0.94716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.92 37.16 0.37 -0.42 16 2 C -0.12 -0.95 5.87 37.16 0.22 -0.73 16 3 S 0.03 0.34 22.31 -107.50 -2.40 -2.05 16 4 C -0.05 -0.68 7.70 51.39 0.40 -0.28 16 5 N -0.25 -3.20 11.25 30.92 0.35 -2.85 16 6 N -0.49 -6.46 6.83 30.42 0.21 -6.25 16 7 H 0.44 4.55 8.96 -184.31 -1.65 2.89 16 8 C 0.35 5.83 8.37 -89.36 -0.75 5.08 16 9 N -0.57 -10.36 10.52 -14.82 -0.16 -10.51 16 10 C 0.48 10.21 8.62 -90.64 -0.78 9.43 16 11 O -0.48 -9.75 12.06 -17.79 -0.21 -9.97 16 12 N -0.56 -13.08 5.86 -57.67 -0.34 -13.42 16 13 C 0.23 6.01 2.28 -69.08 -0.16 5.86 16 14 H 0.03 0.86 6.80 -51.93 -0.35 0.51 16 15 C -0.50 -14.39 8.84 -34.44 -0.30 -14.69 16 16 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 17 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 18 N -0.89 -25.86 11.29 55.43 0.63 -25.24 16 19 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 C -0.11 -2.69 5.45 -26.74 -0.15 -2.83 16 24 C -0.14 -3.10 9.80 37.16 0.36 -2.74 16 25 S 0.28 4.74 19.98 -107.50 -2.15 2.59 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.39 5.67 8.98 45.56 0.41 6.08 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 35 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.70 7.75 -51.93 -0.40 0.30 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -32.50 342.80 -10.05 -42.55 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.23 Total: 2.83 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -0.88 Total: 0.28 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.69 Total: -58.27 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -0.21 Total: -9.97 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 5.09 SS G_CDS: -4.55 Total: 0.54 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.50 -10.05 -42.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331066971.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.791 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds