Wall clock time and date at job start Tue Mar 31 2020 10:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81001 * 109.46877 * 2 1 4 4 C 1.76205 * 99.99797 * 180.02562 * 3 2 1 5 5 N 1.28559 * 124.99575 * 359.97385 * 4 3 2 6 6 N 1.37788 * 116.19366 * 179.97438 * 5 4 3 7 7 H 0.96998 * 122.73789 * 179.97438 * 6 5 4 8 8 C 1.33901 * 114.52386 * 359.97438 * 6 5 4 9 9 N 1.32895 * 125.66760 * 179.97438 * 8 6 5 10 10 C 1.34222 * 120.00535 * 180.02562 * 9 8 6 11 11 O 1.35365 * 120.00378 * 180.02562 * 10 9 8 12 12 N 1.31074 * 119.99706 * 359.97438 * 10 9 8 13 13 C 1.46503 * 120.00138 * 185.35436 * 12 10 9 14 14 H 1.09001 * 109.46892 * 5.42806 * 13 12 10 15 15 C 1.50702 * 109.47261 * 245.43558 * 13 12 10 16 16 H 1.07998 * 119.99906 * 359.97438 * 15 13 12 17 17 C 1.37879 * 120.00063 * 180.02562 * 15 13 12 18 18 N 1.31511 * 120.00010 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 119.99991 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47425 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47485 * 119.99953 * 19 17 15 22 22 H 1.48500 * 109.47090 * 239.99834 * 19 17 15 23 23 C 1.52990 * 109.47219 * 125.42975 * 13 12 10 24 24 C 1.52996 * 109.47470 * 295.00273 * 23 13 12 25 25 S 1.75923 * 124.99935 * 180.27912 * 4 3 2 26 26 H 1.08996 * 109.47317 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47330 * 300.00037 * 1 2 3 28 28 H 1.08998 * 109.47295 * 60.00155 * 1 2 3 29 29 H 1.08999 * 109.46830 * 239.99864 * 2 1 3 30 30 H 1.08996 * 109.46789 * 119.99935 * 2 1 3 31 31 H 0.96702 * 114.00022 * 354.98497 * 11 10 9 32 32 H 0.96996 * 120.00104 * 180.02562 * 18 17 15 33 33 H 1.09001 * 109.47535 * 55.00437 * 23 13 12 34 34 H 1.09001 * 109.47492 * 175.00257 * 23 13 12 35 35 H 1.09001 * 109.47075 * 299.99808 * 24 23 13 36 36 H 1.09001 * 109.47254 * 59.99776 * 24 23 13 37 37 H 1.09002 * 109.47677 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1333 1.7065 0.0000 4 6 3.8713 1.4166 -0.0008 5 7 4.4253 0.2565 -0.0007 6 7 5.8031 0.2404 -0.0019 7 1 6.3181 -0.5816 -0.0016 8 6 6.3730 1.4520 -0.0036 9 7 7.6798 1.6936 -0.0045 10 6 8.1285 2.9586 -0.0057 11 8 9.4596 3.2047 -0.0071 12 7 7.2778 3.9557 -0.0064 13 6 7.7632 5.3328 -0.1260 14 1 8.8392 5.3249 -0.3000 15 6 7.4659 6.0827 1.1470 16 1 6.9650 5.5835 1.9633 17 6 7.8323 7.4062 1.2691 18 7 8.4418 8.0142 0.2749 19 14 7.4632 8.3358 2.8467 20 1 6.7754 7.4328 3.8040 21 1 8.7334 8.8183 3.4458 22 1 6.5867 9.4958 2.5441 23 6 7.0619 6.0207 -1.2988 24 6 7.4632 5.3350 -2.6063 25 16 5.1037 2.6720 0.0059 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 10.0065 2.4109 0.0700 32 1 8.6999 8.9452 0.3609 33 1 5.9820 5.9504 -1.1683 34 1 7.3561 7.0697 -1.3335 35 1 8.5431 5.4054 -2.7369 36 1 7.1690 4.2861 -2.5717 37 1 6.9632 5.8248 -3.4419 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331066971.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:37 Heat of formation + Delta-G solvation = 23.634488 kcal Electronic energy + Delta-G solvation = -21728.971820 eV Core-core repulsion = 18373.785920 eV Total energy + Delta-G solvation = -3355.185900 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.077 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.14005 -40.04015 -36.94488 -36.52837 -34.00161 -33.72715 -32.99190 -31.70713 -28.69699 -26.67737 -24.92387 -24.67383 -23.54583 -22.60294 -21.35081 -20.57539 -18.95492 -18.43925 -17.82001 -17.65471 -17.10683 -16.87996 -16.22359 -15.97988 -15.81540 -15.45069 -14.81208 -14.68107 -14.37347 -13.99132 -13.62177 -13.29865 -13.23162 -13.17506 -13.04722 -12.87757 -12.76217 -12.29644 -12.23028 -11.93427 -11.89160 -11.65174 -11.58798 -11.42239 -11.16112 -10.93411 -10.61582 -10.00305 -9.92586 -9.16252 -8.64657 -8.07643 -6.23343 -0.33856 -0.23769 0.04178 0.31444 0.41032 1.13445 1.39641 1.40296 1.53058 1.56718 2.23217 2.45428 2.86293 3.16576 3.57510 4.05399 4.06021 4.11984 4.20439 4.54339 4.56642 4.57685 4.74862 4.95190 4.95460 5.15881 5.24538 5.29197 5.45250 5.60501 5.66490 5.74641 5.87553 6.05581 6.30180 6.39085 6.76076 7.09642 7.20912 7.47679 8.94656 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.004103 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.352198 B = 6821.814271 C = 7724.439501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 S 0.036 5.964 4 C -0.039 4.039 5 N -0.237 5.237 6 N -0.471 5.471 7 H 0.459 0.541 8 C 0.360 3.640 9 N -0.577 5.577 10 C 0.487 3.513 11 O -0.496 6.496 12 N -0.584 5.584 13 C 0.235 3.765 14 H -0.013 1.013 15 C -0.522 4.522 16 H 0.043 0.957 17 C 0.015 3.985 18 N -0.915 5.915 19 Si 0.960 3.040 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.272 1.272 23 C -0.100 4.100 24 C -0.128 4.128 25 S 0.230 5.770 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.410 0.590 32 H 0.263 0.737 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.030 0.970 36 H 0.037 0.963 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.095 -18.710 -2.178 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.266 4.266 3 S 0.262 5.738 4 C -0.445 4.445 5 N -0.059 5.059 6 N -0.202 5.202 7 H 0.309 0.691 8 C -0.024 4.024 9 N -0.329 5.329 10 C 0.167 3.833 11 O -0.290 6.290 12 N -0.330 5.330 13 C 0.126 3.874 14 H 0.005 0.995 15 C -0.561 4.561 16 H 0.061 0.939 17 C -0.184 4.184 18 N -0.554 5.554 19 Si 0.785 3.215 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.198 1.198 23 C -0.139 4.139 24 C -0.185 4.185 25 S 0.460 5.540 26 H 0.114 0.886 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.266 0.734 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.924 -16.811 -2.229 22.590 hybrid contribution 2.370 -1.280 0.782 2.804 sum -12.554 -18.091 -1.447 22.068 Atomic orbital electron populations 1.21604 0.89964 1.04588 1.03610 1.23768 1.01522 0.93968 1.07358 1.86130 0.84404 1.13166 1.90119 1.30843 1.09608 0.99916 1.04085 1.74583 0.88995 1.20511 1.21856 1.45535 1.01892 1.06370 1.66377 0.69097 1.25257 0.94121 0.90580 0.92430 1.68250 1.08341 1.17486 1.38783 1.21174 0.82106 0.88505 0.91469 1.85267 1.15124 1.38743 1.89825 1.71522 1.30002 1.03319 1.28175 1.18681 0.92106 0.82367 0.94225 0.99512 1.21399 1.38224 0.96300 1.00136 0.93862 1.25686 0.94828 0.98119 0.99764 1.70014 1.41012 1.11904 1.32505 0.85487 0.77945 0.78480 0.79601 1.19682 1.20546 1.19772 1.21406 0.98138 1.01112 0.93248 1.21612 0.99545 0.99406 0.97950 1.89076 0.88966 0.99760 1.76177 0.88575 0.91253 0.91149 0.88269 0.88395 0.73409 0.92771 0.94542 0.91079 0.95062 0.94428 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.92 71.98 0.71 -0.38 16 2 C -0.12 -1.44 5.87 71.98 0.42 -1.01 16 3 S 0.04 0.69 22.31 -56.49 -1.26 -0.57 16 4 C -0.04 -0.99 7.70 130.72 1.01 0.01 16 5 N -0.24 -5.55 11.25 -56.09 -0.63 -6.18 16 6 N -0.47 -11.40 6.83 -57.66 -0.39 -11.79 16 7 H 0.46 8.22 8.96 -214.78 -1.93 6.30 16 8 C 0.36 11.56 8.37 179.91 1.51 13.07 16 9 N -0.58 -20.60 10.52 -312.83 -3.29 -23.89 16 10 C 0.49 21.05 8.62 180.35 1.56 22.60 16 11 O -0.50 -20.71 12.06 -86.56 -1.04 -21.76 16 12 N -0.58 -28.15 5.86 -450.01 -2.64 -30.79 16 13 C 0.24 13.08 2.28 44.24 0.10 13.18 16 14 H -0.01 -0.81 6.80 -2.39 -0.02 -0.82 16 15 C -0.52 -31.10 8.84 25.60 0.23 -30.87 16 16 H 0.04 2.63 7.81 -2.91 -0.02 2.60 16 17 C 0.01 0.87 5.29 84.66 0.45 1.31 16 18 N -0.91 -54.55 11.29 21.45 0.24 -54.30 16 19 Si 0.96 45.62 29.54 68.60 2.03 47.64 16 20 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 23 C -0.10 -5.20 5.45 30.59 0.17 -5.03 16 24 C -0.13 -5.60 9.80 71.98 0.71 -4.89 16 25 S 0.23 7.77 19.98 -56.49 -1.13 6.64 16 26 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.10 1.19 8.14 -2.40 -0.02 1.17 16 30 H 0.10 1.20 8.14 -2.40 -0.02 1.18 16 31 H 0.41 12.05 8.98 -74.06 -0.67 11.39 16 32 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 33 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.07 4.05 5.95 -2.39 -0.01 4.04 16 35 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.04 1.59 7.75 -2.39 -0.02 1.57 16 37 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -71.94 342.80 -2.74 -74.68 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -1.47 Total: 12.33 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 6.85 Total: 7.99 kcal Atomic # 7 Polarization: -120.25 SS G_CDS: -6.71 Total: -126.96 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -1.04 Total: -21.76 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: 8.46 SS G_CDS: -2.39 Total: 6.08 kcal Total: -71.94 -2.74 -74.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331066971.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.316 kcal (2) G-P(sol) polarization free energy of solvation -71.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds