Wall clock time and date at job start Tue Mar 31 2020 11:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34056 * 125.63479 * 2 1 4 4 C 1.34834 * 109.39611 * 180.23856 * 3 2 1 5 5 C 1.47032 * 125.96701 * 179.80123 * 4 3 2 6 6 O 1.35338 * 120.00106 * 179.97438 * 5 4 3 7 7 N 1.30411 * 120.00045 * 359.95801 * 5 4 3 8 8 C 1.46507 * 119.99954 * 172.62649 * 7 5 4 9 9 C 1.50704 * 109.46930 * 113.77399 * 8 7 5 10 10 H 1.08003 * 119.99544 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99848 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99966 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99861 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46986 * 90.00092 * 13 11 9 15 15 H 1.48497 * 109.47252 * 209.99799 * 13 11 9 16 16 H 1.48504 * 109.47089 * 330.00466 * 13 11 9 17 17 C 1.36313 * 108.06796 * 359.76501 * 4 3 2 18 18 C 1.34988 * 125.63558 * 179.83100 * 2 1 3 19 19 S 1.76204 * 126.45354 * 0.03860 * 18 2 1 20 20 O 1.42102 * 106.39840 * 181.17070 * 19 18 2 21 21 O 1.42101 * 106.40226 * 48.24963 * 19 18 2 22 22 N 1.65603 * 107.21809 * 294.70629 * 19 18 2 23 23 C 1.46497 * 119.99588 * 89.99950 * 22 19 18 24 24 C 1.46498 * 120.00202 * 270.00345 * 22 19 18 25 25 H 1.08995 * 109.46975 * 270.16373 * 1 2 3 26 26 H 1.08988 * 109.47189 * 30.16819 * 1 2 3 27 27 H 1.09006 * 109.46903 * 150.17201 * 1 2 3 28 28 H 0.96706 * 114.00094 * 184.97898 * 6 5 4 29 29 H 1.08998 * 109.46833 * 233.76824 * 8 7 5 30 30 H 1.08993 * 109.47195 * 353.77211 * 8 7 5 31 31 H 0.97004 * 119.99509 * 180.02562 * 12 11 9 32 32 H 1.08002 * 126.64234 * 180.02562 * 17 4 3 33 33 H 1.09000 * 109.47660 * 270.00056 * 23 22 19 34 34 H 1.09003 * 109.47194 * 30.00578 * 23 22 19 35 35 H 1.09001 * 109.47248 * 150.00005 * 23 22 19 36 36 H 1.08994 * 109.46961 * 269.99753 * 24 22 19 37 37 H 1.09004 * 109.46974 * 30.00183 * 24 22 19 38 38 H 1.08998 * 109.46961 * 149.99588 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2880 1.0895 0.0000 4 6 3.5826 0.7125 -0.0053 5 6 4.7444 1.6136 -0.0112 6 8 5.9974 1.1021 -0.0156 7 7 4.5675 2.9056 -0.0124 8 6 5.7155 3.8023 0.1446 9 6 5.9206 4.5833 -1.1278 10 1 5.2619 4.4270 -1.9694 11 6 6.9489 5.4973 -1.2175 12 7 7.7512 5.6871 -0.1929 13 14 7.2036 6.4648 -2.7950 14 1 6.4205 7.7252 -2.7344 15 1 8.6451 6.7848 -2.9522 16 1 6.7473 5.6538 -3.9523 17 6 3.6261 -0.6499 -0.0034 18 6 2.2935 -1.0971 0.0032 19 16 1.7516 -2.7737 0.0072 20 8 2.9251 -3.5745 0.0378 21 8 0.7650 -2.8790 -1.0101 22 7 0.9709 -3.0332 1.4445 23 6 -0.4708 -2.7948 1.5483 24 6 1.7220 -3.5010 2.6120 25 1 -0.3633 0.0029 1.0276 26 1 -0.3633 0.8884 -0.5164 27 1 -0.3633 -0.8916 -0.5112 28 1 6.6945 1.7684 0.0574 29 1 5.5281 4.4916 0.9678 30 1 6.6085 3.2151 0.3585 31 1 8.4745 6.3304 -0.2560 32 1 4.5128 -1.2665 -0.0061 33 1 -0.6477 -1.7618 1.8480 34 1 -0.9399 -2.9781 0.5816 35 1 -0.8976 -3.4672 2.2926 36 1 1.7276 -4.5908 2.6277 37 1 2.7466 -3.1331 2.5562 38 1 1.2508 -3.1269 3.5209 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331207129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:24 Heat of formation + Delta-G solvation = -69.583476 kcal Electronic energy + Delta-G solvation = -24276.944403 eV Core-core repulsion = 20442.670647 eV Total energy + Delta-G solvation = -3834.273756 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.097 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.79305 -38.54016 -37.45626 -36.51749 -35.99228 -33.91853 -33.53564 -32.61059 -31.96504 -28.78383 -28.31728 -26.52257 -25.00623 -23.58591 -22.55002 -21.43030 -20.60797 -18.91610 -17.80249 -17.48215 -16.77751 -16.59085 -16.52397 -16.25638 -16.00153 -15.19869 -14.80571 -14.70002 -14.53665 -13.90986 -13.65062 -13.48660 -13.37301 -13.30575 -12.79409 -12.69921 -12.54718 -12.42651 -12.19022 -12.14291 -11.94318 -11.93128 -11.79621 -11.46186 -11.03722 -10.91466 -10.53695 -10.26488 -10.00205 -9.49180 -9.20979 -8.97910 -8.52570 -7.91635 -6.25501 -4.31316 0.19017 1.06815 1.70340 2.29874 2.77990 3.21568 3.26945 3.30550 3.39490 3.54112 3.92949 4.04149 4.28675 4.43414 4.50770 4.74457 4.86793 4.93804 4.98542 5.06429 5.08462 5.11798 5.24904 5.32494 5.43251 5.46291 5.54903 5.60994 5.77614 6.14299 6.16990 6.40024 6.74365 6.83291 7.13727 7.33643 7.71072 7.99962 8.66361 8.87756 9.35876 10.83584 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.028649 B = 0.002874 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.100876 B = 9739.469237 C = 9961.185084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.133 3.867 3 O -0.131 6.131 4 C 0.064 3.936 5 C 0.354 3.646 6 O -0.520 6.520 7 N -0.522 5.522 8 C 0.175 3.825 9 C -0.520 4.520 10 H 0.065 0.935 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.907 3.093 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.272 1.272 17 C -0.091 4.091 18 C -0.769 4.769 19 S 2.723 3.277 20 O -0.950 6.950 21 O -0.956 6.956 22 N -1.006 6.006 23 C 0.076 3.924 24 C 0.093 3.907 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.416 0.584 29 H 0.058 0.942 30 H -0.001 1.001 31 H 0.266 0.734 32 H 0.172 0.828 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.115 -17.982 6.599 25.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.075 3.925 3 O -0.022 6.022 4 C 0.013 3.987 5 C 0.128 3.872 6 O -0.324 6.324 7 N -0.258 5.258 8 C 0.049 3.951 9 C -0.558 4.558 10 H 0.083 0.917 11 C -0.143 4.143 12 N -0.531 5.531 13 Si 0.734 3.266 14 H -0.203 1.203 15 H -0.209 1.209 16 H -0.197 1.197 17 C -0.114 4.114 18 C -0.856 4.856 19 S 2.811 3.189 20 O -0.941 6.941 21 O -0.946 6.946 22 N -0.846 5.846 23 C -0.069 4.069 24 C -0.053 4.053 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.129 0.871 28 H 0.278 0.722 29 H 0.076 0.924 30 H 0.016 0.984 31 H 0.076 0.924 32 H 0.190 0.810 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.653 -18.014 5.925 25.238 hybrid contribution 1.709 1.575 -0.328 2.347 sum -14.944 -16.439 5.597 22.910 Atomic orbital electron populations 1.21057 0.83870 1.06976 1.05059 1.22422 0.93884 0.82880 0.93306 1.84091 1.15819 1.33965 1.68372 1.18872 0.80286 0.90741 1.08783 1.19881 0.81761 0.87780 0.97763 1.84560 1.14938 1.42841 1.90016 1.72759 1.38207 1.01118 1.13687 1.19871 0.84982 0.90981 0.99305 1.21044 1.14086 1.22302 0.98347 0.91680 1.25020 0.95360 0.96664 0.97240 1.69932 1.17731 1.35185 1.30297 0.86340 0.77358 0.80153 0.82734 1.20288 1.20934 1.19671 1.21347 0.95728 0.92884 1.01421 1.31680 1.02100 1.23848 1.27934 1.01104 0.72905 0.72727 0.72150 1.93572 1.48617 1.66036 1.85833 1.93557 1.60291 1.86315 1.54429 1.57337 1.16907 1.81602 1.28745 1.21792 0.79086 1.01767 1.04261 1.21529 0.96221 0.99919 0.87593 0.88139 0.88176 0.87130 0.72188 0.92419 0.98390 0.92392 0.81004 0.92418 0.89597 0.90286 0.92061 0.90590 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.27 36.01 0.33 -0.58 16 2 C 0.13 1.74 7.31 -35.46 -0.26 1.48 16 3 O -0.13 -2.23 10.66 4.90 0.05 -2.17 16 4 C 0.06 1.18 7.15 -36.71 -0.26 0.92 16 5 C 0.35 7.43 7.97 -14.59 -0.12 7.32 16 6 O -0.52 -10.15 13.37 -17.71 -0.24 -10.39 16 7 N -0.52 -12.49 10.51 -60.60 -0.64 -13.13 16 8 C 0.17 4.54 5.98 -5.19 -0.03 4.51 16 9 C -0.52 -14.71 9.39 -34.44 -0.32 -15.03 16 10 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 13 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 C -0.09 -1.44 10.36 -39.40 -0.41 -1.85 16 18 C -0.77 -10.40 6.19 -39.86 -0.25 -10.64 16 19 S 2.72 32.08 5.46 -107.50 -0.59 31.49 16 20 O -0.95 -13.74 16.87 -57.17 -0.96 -14.71 16 21 O -0.96 -12.42 15.13 -57.17 -0.87 -13.29 16 22 N -1.01 -8.07 3.58 -129.21 -0.46 -8.54 16 23 C 0.08 0.39 9.81 59.85 0.59 0.98 16 24 C 0.09 0.61 10.29 59.85 0.62 1.22 16 25 H 0.10 0.51 6.77 -51.93 -0.35 0.16 16 26 H 0.10 0.71 8.14 -51.94 -0.42 0.29 16 27 H 0.11 0.80 6.16 -51.93 -0.32 0.48 16 28 H 0.42 7.91 5.91 45.56 0.27 8.18 16 29 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 30 H 0.00 -0.03 5.41 -51.93 -0.28 -0.31 16 31 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.17 2.52 8.06 -52.49 -0.42 2.10 16 33 H 0.06 0.21 6.31 -51.93 -0.33 -0.12 16 34 H 0.09 0.45 7.02 -51.93 -0.36 0.08 16 35 H 0.08 0.26 8.07 -51.93 -0.42 -0.16 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.55 7.79 -51.93 -0.40 0.14 16 38 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 LS Contribution 339.01 15.07 5.11 5.11 Total: -1.00 -35.24 339.01 -6.94 -42.18 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -3.85 Total: 1.95 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -0.21 Total: -10.10 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.36 Total: -46.46 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -2.01 Total: -40.56 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 32.08 SS G_CDS: -0.59 Total: 31.49 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.24 -6.94 -42.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331207129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.408 kcal (2) G-P(sol) polarization free energy of solvation -35.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds