Wall clock time and date at job start Tue Mar 31 2020 11:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34056 * 125.63479 * 2 1 4 4 C 1.34834 * 109.39611 * 180.23856 * 3 2 1 5 5 C 1.47032 * 125.96701 * 179.80123 * 4 3 2 6 6 O 1.35338 * 120.00106 * 179.97438 * 5 4 3 7 7 N 1.30411 * 120.00045 * 359.95801 * 5 4 3 8 8 C 1.46507 * 119.99954 * 172.62649 * 7 5 4 9 9 C 1.50704 * 109.46930 * 113.77399 * 8 7 5 10 10 H 1.08003 * 119.99544 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99848 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99966 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99861 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46986 * 90.00092 * 13 11 9 15 15 H 1.48497 * 109.47252 * 209.99799 * 13 11 9 16 16 H 1.48504 * 109.47089 * 330.00466 * 13 11 9 17 17 C 1.36313 * 108.06796 * 359.76501 * 4 3 2 18 18 C 1.34988 * 125.63558 * 179.83100 * 2 1 3 19 19 S 1.76204 * 126.45354 * 0.03860 * 18 2 1 20 20 O 1.42102 * 106.39840 * 181.17070 * 19 18 2 21 21 O 1.42101 * 106.40226 * 48.24963 * 19 18 2 22 22 N 1.65603 * 107.21809 * 294.70629 * 19 18 2 23 23 C 1.46497 * 119.99588 * 89.99950 * 22 19 18 24 24 C 1.46498 * 120.00202 * 270.00345 * 22 19 18 25 25 H 1.08995 * 109.46975 * 270.16373 * 1 2 3 26 26 H 1.08988 * 109.47189 * 30.16819 * 1 2 3 27 27 H 1.09006 * 109.46903 * 150.17201 * 1 2 3 28 28 H 0.96706 * 114.00094 * 184.97898 * 6 5 4 29 29 H 1.08998 * 109.46833 * 233.76824 * 8 7 5 30 30 H 1.08993 * 109.47195 * 353.77211 * 8 7 5 31 31 H 0.97004 * 119.99509 * 180.02562 * 12 11 9 32 32 H 1.08002 * 126.64234 * 180.02562 * 17 4 3 33 33 H 1.09000 * 109.47660 * 270.00056 * 23 22 19 34 34 H 1.09003 * 109.47194 * 30.00578 * 23 22 19 35 35 H 1.09001 * 109.47248 * 150.00005 * 23 22 19 36 36 H 1.08994 * 109.46961 * 269.99753 * 24 22 19 37 37 H 1.09004 * 109.46974 * 30.00183 * 24 22 19 38 38 H 1.08998 * 109.46961 * 149.99588 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2880 1.0895 0.0000 4 6 3.5826 0.7125 -0.0053 5 6 4.7444 1.6136 -0.0112 6 8 5.9974 1.1021 -0.0156 7 7 4.5675 2.9056 -0.0124 8 6 5.7155 3.8023 0.1446 9 6 5.9206 4.5833 -1.1278 10 1 5.2619 4.4270 -1.9694 11 6 6.9489 5.4973 -1.2175 12 7 7.7512 5.6871 -0.1929 13 14 7.2036 6.4648 -2.7950 14 1 6.4205 7.7252 -2.7344 15 1 8.6451 6.7848 -2.9522 16 1 6.7473 5.6538 -3.9523 17 6 3.6261 -0.6499 -0.0034 18 6 2.2935 -1.0971 0.0032 19 16 1.7516 -2.7737 0.0072 20 8 2.9251 -3.5745 0.0378 21 8 0.7650 -2.8790 -1.0101 22 7 0.9709 -3.0332 1.4445 23 6 -0.4708 -2.7948 1.5483 24 6 1.7220 -3.5010 2.6120 25 1 -0.3633 0.0029 1.0276 26 1 -0.3633 0.8884 -0.5164 27 1 -0.3633 -0.8916 -0.5112 28 1 6.6945 1.7684 0.0574 29 1 5.5281 4.4916 0.9678 30 1 6.6085 3.2151 0.3585 31 1 8.4745 6.3304 -0.2560 32 1 4.5128 -1.2665 -0.0061 33 1 -0.6477 -1.7618 1.8480 34 1 -0.9399 -2.9781 0.5816 35 1 -0.8976 -3.4672 2.2926 36 1 1.7276 -4.5908 2.6277 37 1 2.7466 -3.1331 2.5562 38 1 1.2508 -3.1269 3.5209 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331207129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:24 Heat of formation + Delta-G solvation = -100.967585 kcal Electronic energy + Delta-G solvation = -24278.305320 eV Core-core repulsion = 20442.670647 eV Total energy + Delta-G solvation = -3835.634673 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.097 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.00598 -40.23162 -38.44622 -37.14050 -36.94003 -35.77982 -34.80258 -34.24838 -33.32494 -30.25057 -28.92246 -27.99525 -25.68025 -25.23577 -23.68916 -22.87200 -22.06620 -19.77615 -19.04753 -18.77727 -18.52320 -18.26686 -17.71853 -17.16717 -17.05983 -16.70519 -16.27680 -15.55919 -15.42848 -15.35935 -14.90271 -14.44359 -14.39721 -14.09575 -14.01540 -14.00726 -13.85145 -13.52616 -13.36046 -13.12525 -13.09079 -12.93882 -12.77683 -12.60209 -12.50630 -12.42631 -12.28945 -11.93749 -11.68934 -10.93667 -10.81935 -10.46605 -10.03963 -9.47196 -8.36744 -6.52276 -0.70593 -0.17983 0.48078 1.04954 1.34978 1.35968 1.47687 1.76225 1.99613 2.31166 2.58143 2.70208 2.93986 3.00671 3.26557 3.48605 3.77126 3.92866 4.17335 4.37059 4.42142 4.46976 4.56701 4.59006 4.66221 4.79300 4.85858 4.93332 5.01828 5.03630 5.08917 5.13845 5.18642 5.48691 5.55424 5.59088 5.61610 5.92426 6.54908 7.04160 7.23839 8.71765 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.028649 B = 0.002874 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.100876 B = 9739.469237 C = 9961.185084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.156 3.844 3 O -0.152 6.152 4 C 0.013 3.987 5 C 0.375 3.625 6 O -0.513 6.513 7 N -0.566 5.566 8 C 0.186 3.814 9 C -0.546 4.546 10 H 0.050 0.950 11 C 0.015 3.985 12 N -0.920 5.920 13 Si 0.975 3.025 14 H -0.270 1.270 15 H -0.271 1.271 16 H -0.271 1.271 17 C -0.069 4.069 18 C -0.784 4.784 19 S 2.740 3.260 20 O -0.981 6.981 21 O -0.968 6.968 22 N -0.997 5.997 23 C 0.061 3.939 24 C 0.082 3.918 25 H 0.140 0.860 26 H 0.112 0.888 27 H 0.124 0.876 28 H 0.418 0.582 29 H 0.029 0.971 30 H 0.001 0.999 31 H 0.272 0.728 32 H 0.179 0.821 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.172 -19.221 6.750 27.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.098 3.902 3 O -0.045 6.045 4 C -0.038 4.038 5 C 0.150 3.850 6 O -0.316 6.316 7 N -0.303 5.303 8 C 0.059 3.941 9 C -0.583 4.583 10 H 0.069 0.931 11 C -0.185 4.185 12 N -0.558 5.558 13 Si 0.798 3.202 14 H -0.195 1.195 15 H -0.196 1.196 16 H -0.196 1.196 17 C -0.092 4.092 18 C -0.868 4.868 19 S 2.825 3.175 20 O -0.971 6.971 21 O -0.958 6.958 22 N -0.839 5.839 23 C -0.083 4.083 24 C -0.063 4.063 25 H 0.158 0.842 26 H 0.131 0.869 27 H 0.142 0.858 28 H 0.279 0.721 29 H 0.047 0.953 30 H 0.018 0.982 31 H 0.081 0.919 32 H 0.196 0.804 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.700 -19.252 6.078 27.519 hybrid contribution 2.175 1.716 -0.283 2.785 sum -16.525 -17.535 5.795 24.782 Atomic orbital electron populations 1.21500 0.80007 1.08230 1.07899 1.23502 0.95725 0.81702 0.89276 1.84087 1.15524 1.35656 1.69223 1.18659 0.80385 0.90937 1.13774 1.20417 0.82810 0.87579 0.94200 1.84561 1.14826 1.42676 1.89508 1.72725 1.36848 1.02146 1.18541 1.19513 0.85930 0.91060 0.97580 1.21268 1.14517 1.23610 0.98946 0.93142 1.25872 0.94733 0.97302 1.00627 1.70017 1.18070 1.35675 1.32069 0.85308 0.77858 0.78611 0.78421 1.19488 1.19587 1.19572 1.21576 0.97302 0.91976 0.98350 1.32024 1.00982 1.25231 1.28611 1.00600 0.72266 0.71735 0.72868 1.93530 1.50383 1.66501 1.86702 1.93533 1.60236 1.86139 1.55900 1.57116 1.18033 1.80981 1.27814 1.22167 0.76980 1.03862 1.05270 1.21772 0.95930 1.00663 0.87922 0.84235 0.86905 0.85798 0.72063 0.95309 0.98215 0.91859 0.80387 0.90348 0.89586 0.87791 0.91170 0.91698 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 9.27 71.24 0.66 -0.86 16 2 C 0.16 3.78 7.31 24.94 0.18 3.97 16 3 O -0.15 -5.14 10.66 -5.39 -0.06 -5.20 16 4 C 0.01 0.47 7.15 24.13 0.17 0.64 16 5 C 0.38 16.29 7.97 87.21 0.69 16.99 16 6 O -0.51 -20.62 13.37 -86.27 -1.15 -21.77 16 7 N -0.57 -28.35 10.51 -459.61 -4.83 -33.18 16 8 C 0.19 10.17 5.98 85.63 0.51 10.68 16 9 C -0.55 -31.96 9.39 25.60 0.24 -31.72 16 10 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 11 C 0.02 0.85 5.46 84.65 0.46 1.32 16 12 N -0.92 -53.42 13.29 21.45 0.28 -53.13 16 13 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 14 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 15 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 17 C -0.07 -2.18 10.36 22.39 0.23 -1.94 16 18 C -0.78 -20.14 6.19 22.09 0.14 -20.00 16 19 S 2.74 59.65 5.46 -56.49 -0.31 59.35 16 20 O -0.98 -27.51 16.87 -128.00 -2.16 -29.67 16 21 O -0.97 -23.15 15.13 -128.00 -1.94 -25.09 16 22 N -1.00 -13.03 3.58 -562.70 -2.02 -15.05 16 23 C 0.06 0.38 9.81 127.77 1.25 1.63 16 24 C 0.08 0.85 10.29 127.77 1.31 2.17 16 25 H 0.14 0.74 6.77 -2.39 -0.02 0.72 16 26 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.12 1.32 6.16 -2.38 -0.01 1.30 16 28 H 0.42 16.56 5.91 -74.05 -0.44 16.13 16 29 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.00 0.03 5.41 -2.39 -0.01 0.02 16 31 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 32 H 0.18 5.22 8.06 -2.91 -0.02 5.19 16 33 H 0.08 0.17 6.31 -2.39 -0.02 0.16 16 34 H 0.09 0.57 7.02 -2.39 -0.02 0.56 16 35 H 0.10 0.19 8.07 -2.39 -0.02 0.18 16 36 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.06 0.83 7.79 -2.39 -0.02 0.82 16 38 H 0.10 0.50 8.07 -2.39 -0.02 0.48 16 Total: -1.00 -78.59 339.01 -3.62 -82.21 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.68 Total: 12.45 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 5.86 Total: -17.14 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -6.56 Total: -101.36 kcal Atomic # 8 Polarization: -76.42 SS G_CDS: -5.31 Total: -81.73 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: 59.65 SS G_CDS: -0.31 Total: 59.35 kcal Total: -78.59 -3.62 -82.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331207129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.762 kcal (2) G-P(sol) polarization free energy of solvation -78.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds