Wall clock time and date at job start Tue Mar 31 2020 10:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38360 * 119.91664 * 2 1 4 4 C 1.38460 * 120.28004 * 179.97438 * 3 2 1 5 5 Cl 1.73600 * 119.93740 * 180.02562 * 4 3 2 6 6 C 1.38090 * 120.12032 * 0.02562 * 4 3 2 7 7 C 1.39563 * 119.83850 * 359.97438 * 6 4 3 8 8 C 1.47806 * 120.13833 * 179.97438 * 7 6 4 9 9 O 1.21555 * 119.99831 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00550 * 0.02562 * 8 7 6 11 11 C 1.39383 * 120.00394 * 174.30853 * 10 8 7 12 12 C 1.38619 * 119.58232 * 185.44303 * 11 10 8 13 13 C 1.40799 * 118.79195 * 179.97438 * 12 11 10 14 14 C 1.41548 * 120.99860 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00404 * 212.52533 * 14 13 12 16 16 C 1.40033 * 119.99494 * 32.52930 * 14 13 12 17 17 N 1.30750 * 120.00110 * 357.28378 * 16 14 13 18 18 Si 1.86796 * 120.00011 * 177.28957 * 16 14 13 19 19 H 1.48498 * 109.47211 * 89.99935 * 18 16 14 20 20 H 1.48504 * 109.47012 * 209.99683 * 18 16 14 21 21 H 1.48500 * 109.47080 * 329.99827 * 18 16 14 22 22 C 1.41183 * 118.01251 * 0.02562 * 13 12 11 23 23 C 1.37593 * 119.01441 * 359.97438 * 22 13 12 24 24 N 1.32076 * 121.11331 * 359.74586 * 23 22 13 25 25 C 1.37933 * 119.92003 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.46942 * 269.99890 * 1 2 3 27 27 H 1.08996 * 109.46807 * 29.99965 * 1 2 3 28 28 H 1.08994 * 109.46745 * 150.00010 * 1 2 3 29 29 H 1.07997 * 119.86595 * 359.97438 * 3 2 1 30 30 H 1.08004 * 120.08131 * 180.02562 * 6 4 3 31 31 H 0.97000 * 119.99772 * 354.31587 * 10 8 7 32 32 H 1.07995 * 120.60305 * 0.02562 * 12 11 10 33 33 H 0.96994 * 120.00105 * 180.02562 * 17 16 14 34 34 H 1.08002 * 120.49317 * 180.02562 * 22 13 12 35 35 H 1.08002 * 119.43779 * 179.97438 * 23 22 13 36 36 H 1.08008 * 120.05846 * 0.27433 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1992 0.0000 4 6 3.5817 1.2080 0.0005 5 17 4.4385 2.7179 0.0012 6 6 4.2822 0.0180 0.0005 7 6 3.5912 -1.1946 0.0005 8 6 4.3343 -2.4722 0.0000 9 8 3.7299 -3.5268 -0.0005 10 7 5.6820 -2.4680 0.0000 11 6 6.3828 -3.6670 0.1191 12 6 7.7642 -3.6439 0.2322 13 6 8.4552 -4.8648 0.3522 14 6 9.8654 -4.8957 0.4699 15 1 10.4241 -5.7207 0.0534 16 6 10.5361 -3.8566 1.1266 17 7 9.8652 -2.8319 1.5843 18 14 12.3892 -3.9342 1.3485 19 1 13.0543 -3.2947 0.1849 20 1 12.7693 -3.2166 2.5918 21 1 12.8172 -5.3529 1.4451 22 6 7.6995 -6.0574 0.3506 23 6 6.3308 -5.9800 0.2335 24 7 5.7196 -4.8139 0.1284 25 6 2.1950 -1.1955 0.0005 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3632 -0.8900 -0.5138 29 1 1.6536 2.1325 -0.0004 30 1 5.3622 0.0256 0.0014 31 1 6.1644 -1.6305 -0.0829 32 1 8.3005 -2.7066 0.2291 33 1 10.3298 -2.1119 2.0388 34 1 8.1885 -7.0161 0.4408 35 1 5.7461 -6.8881 0.2310 36 1 1.6546 -2.1307 -0.0035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336346424.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:54 Heat of formation + Delta-G solvation = 15.740051 kcal Electronic energy + Delta-G solvation = -22398.798413 eV Core-core repulsion = 18873.489776 eV Total energy + Delta-G solvation = -3525.308637 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.29118 -38.98258 -37.64902 -36.64327 -34.43465 -33.89015 -32.93539 -31.09465 -30.52149 -28.69560 -27.17705 -26.01896 -24.31417 -22.10745 -21.93397 -21.37775 -19.66114 -17.98502 -17.54046 -16.31941 -16.13997 -15.46915 -15.16523 -15.12101 -14.79995 -14.21871 -14.10298 -14.03570 -13.79523 -13.36137 -13.02312 -12.82733 -12.62735 -12.61396 -12.41699 -11.90212 -11.62311 -11.46846 -11.32345 -11.23224 -11.17916 -10.91805 -10.35064 -10.17267 -9.80902 -9.58476 -9.42166 -9.08082 -8.87467 -7.94943 -7.82576 -7.07879 -6.72284 -4.66920 0.65468 0.95951 1.89299 2.51403 2.78710 3.01895 3.04211 3.05920 3.24638 3.46348 3.85417 3.87714 4.43533 4.54087 4.68736 4.87345 4.98338 5.03140 5.07476 5.35284 5.39435 5.51613 5.60100 5.74827 5.87340 5.91529 6.08476 6.22105 6.48189 6.52164 6.59753 6.74628 6.92471 7.12591 7.31168 7.42780 7.71799 7.92326 8.14282 8.37857 8.65296 8.74505 8.77516 9.59791 10.12779 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.015095 B = 0.003417 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.450470 B = 8191.490173 C = 9954.943769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.083 4.083 3 C -0.095 4.095 4 C -0.037 4.037 5 Cl -0.067 7.067 6 C -0.087 4.087 7 C -0.105 4.105 8 C 0.542 3.458 9 O -0.472 6.472 10 N -0.650 5.650 11 C 0.330 3.670 12 C -0.229 4.229 13 C 0.140 3.860 14 C -0.457 4.457 15 H 0.081 0.919 16 C 0.073 3.927 17 N -0.804 5.804 18 Si 0.918 3.082 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.274 4.274 23 C 0.114 3.886 24 N -0.549 5.549 25 C -0.059 4.059 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.408 0.592 32 H 0.139 0.861 33 H 0.280 0.720 34 H 0.104 0.896 35 H 0.125 0.875 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.243 11.057 -2.104 15.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.114 4.114 4 C -0.063 4.063 5 Cl -0.038 7.038 6 C -0.106 4.106 7 C -0.109 4.109 8 C 0.327 3.673 9 O -0.343 6.343 10 N -0.296 5.296 11 C 0.106 3.894 12 C -0.255 4.255 13 C 0.132 3.868 14 C -0.489 4.489 15 H 0.099 0.901 16 C -0.144 4.144 17 N -0.431 5.431 18 Si 0.743 3.257 19 H -0.193 1.193 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.298 4.298 23 C -0.040 4.040 24 N -0.267 5.267 25 C -0.078 4.078 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.153 0.847 30 H 0.156 0.844 31 H 0.244 0.756 32 H 0.156 0.844 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.143 0.857 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.540 10.695 -2.036 16.606 hybrid contribution 2.269 0.691 0.332 2.395 sum -10.270 11.386 -1.704 15.428 Atomic orbital electron populations 1.20805 0.89975 1.03309 1.02870 1.19825 0.96699 0.91963 0.99814 1.21070 0.91838 0.98763 0.99689 1.20743 0.92524 0.87122 1.05940 1.98381 1.77228 1.31205 1.96983 1.21272 1.00618 0.90216 0.98522 1.20137 0.94434 0.92872 1.03423 1.18177 0.82366 0.88358 0.78415 1.90860 1.67439 1.31382 1.44666 1.43310 1.05934 1.08801 1.71578 1.18218 0.88358 0.84985 0.97870 1.21846 0.90357 1.01286 1.11967 1.17620 0.93573 0.89875 0.85775 1.19541 0.91274 1.05800 1.32277 0.90104 1.25926 1.01005 0.93949 0.93495 1.69693 1.37674 1.07086 1.28628 0.86143 0.81518 0.79600 0.78464 1.19349 1.20177 1.18581 1.22030 0.94512 0.98566 1.14683 1.21781 0.91848 0.93823 0.96598 1.67197 1.39549 0.96724 1.23265 1.21291 0.92634 0.98704 0.95207 0.90659 0.91196 0.90853 0.84672 0.84385 0.75613 0.84394 0.90885 0.87781 0.85718 0.83893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.08 -0.85 5.87 -104.69 -0.61 -1.46 16 3 C -0.09 -0.95 9.47 -39.45 -0.37 -1.32 16 4 C -0.04 -0.42 6.31 -39.55 -0.25 -0.67 16 5 Cl -0.07 -0.71 28.95 -51.86 -1.50 -2.21 16 6 C -0.09 -1.12 9.32 -39.14 -0.36 -1.48 16 7 C -0.10 -1.56 5.87 -104.98 -0.62 -2.17 16 8 C 0.54 10.45 7.73 -12.35 -0.10 10.35 16 9 O -0.47 -10.79 14.60 5.32 0.08 -10.71 16 10 N -0.65 -12.90 5.33 -12.36 -0.07 -12.96 16 11 C 0.33 7.98 7.41 -154.77 -1.15 6.83 16 12 C -0.23 -5.76 8.61 -38.47 -0.33 -6.10 16 13 C 0.14 3.64 5.59 -106.55 -0.60 3.05 16 14 C -0.46 -11.65 9.12 -37.65 -0.34 -11.99 16 15 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 16 C 0.07 1.76 5.43 -17.34 -0.09 1.66 16 17 N -0.80 -19.73 10.59 55.55 0.59 -19.15 16 18 Si 0.92 18.06 29.56 -169.99 -5.02 13.03 16 19 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 20 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 22 C -0.27 -6.64 9.90 -38.70 -0.38 -7.02 16 23 C 0.11 2.70 11.15 -17.68 -0.20 2.50 16 24 N -0.55 -13.88 7.85 -12.54 -0.10 -13.98 16 25 C -0.06 -0.77 9.24 -39.18 -0.36 -1.13 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 28 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.14 1.63 6.42 -52.48 -0.34 1.30 16 31 H 0.41 6.73 6.75 -40.82 -0.28 6.46 16 32 H 0.14 3.46 6.13 -52.49 -0.32 3.14 16 33 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 34 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 35 H 0.13 2.57 8.06 -52.49 -0.42 2.14 16 36 H 0.14 1.86 7.65 -52.48 -0.40 1.45 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -30.42 330.82 -9.86 -40.28 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -3.41 Total: 10.12 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -5.41 Total: -9.40 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.42 Total: -46.09 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.02 Total: 13.03 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.42 -9.86 -40.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336346424.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.017 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds