Wall clock time and date at job start Tue Mar 31 2020 10:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38360 * 119.91664 * 2 1 4 4 C 1.38460 * 120.28004 * 179.97438 * 3 2 1 5 5 Cl 1.73600 * 119.93740 * 180.02562 * 4 3 2 6 6 C 1.38090 * 120.12032 * 0.02562 * 4 3 2 7 7 C 1.39563 * 119.83850 * 359.97438 * 6 4 3 8 8 C 1.47806 * 120.13833 * 179.97438 * 7 6 4 9 9 O 1.21555 * 119.99831 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00550 * 0.02562 * 8 7 6 11 11 C 1.39383 * 120.00394 * 174.30853 * 10 8 7 12 12 C 1.38619 * 119.58232 * 185.44303 * 11 10 8 13 13 C 1.40799 * 118.79195 * 179.97438 * 12 11 10 14 14 C 1.41548 * 120.99860 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00404 * 212.52533 * 14 13 12 16 16 C 1.40033 * 119.99494 * 32.52930 * 14 13 12 17 17 N 1.30750 * 120.00110 * 357.28378 * 16 14 13 18 18 Si 1.86796 * 120.00011 * 177.28957 * 16 14 13 19 19 H 1.48498 * 109.47211 * 89.99935 * 18 16 14 20 20 H 1.48504 * 109.47012 * 209.99683 * 18 16 14 21 21 H 1.48500 * 109.47080 * 329.99827 * 18 16 14 22 22 C 1.41183 * 118.01251 * 0.02562 * 13 12 11 23 23 C 1.37593 * 119.01441 * 359.97438 * 22 13 12 24 24 N 1.32076 * 121.11331 * 359.74586 * 23 22 13 25 25 C 1.37933 * 119.92003 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.46942 * 269.99890 * 1 2 3 27 27 H 1.08996 * 109.46807 * 29.99965 * 1 2 3 28 28 H 1.08994 * 109.46745 * 150.00010 * 1 2 3 29 29 H 1.07997 * 119.86595 * 359.97438 * 3 2 1 30 30 H 1.08004 * 120.08131 * 180.02562 * 6 4 3 31 31 H 0.97000 * 119.99772 * 354.31587 * 10 8 7 32 32 H 1.07995 * 120.60305 * 0.02562 * 12 11 10 33 33 H 0.96994 * 120.00105 * 180.02562 * 17 16 14 34 34 H 1.08002 * 120.49317 * 180.02562 * 22 13 12 35 35 H 1.08002 * 119.43779 * 179.97438 * 23 22 13 36 36 H 1.08008 * 120.05846 * 0.27433 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1992 0.0000 4 6 3.5817 1.2080 0.0005 5 17 4.4385 2.7179 0.0012 6 6 4.2822 0.0180 0.0005 7 6 3.5912 -1.1946 0.0005 8 6 4.3343 -2.4722 0.0000 9 8 3.7299 -3.5268 -0.0005 10 7 5.6820 -2.4680 0.0000 11 6 6.3828 -3.6670 0.1191 12 6 7.7642 -3.6439 0.2322 13 6 8.4552 -4.8648 0.3522 14 6 9.8654 -4.8957 0.4699 15 1 10.4241 -5.7207 0.0534 16 6 10.5361 -3.8566 1.1266 17 7 9.8652 -2.8319 1.5843 18 14 12.3892 -3.9342 1.3485 19 1 13.0543 -3.2947 0.1849 20 1 12.7693 -3.2166 2.5918 21 1 12.8172 -5.3529 1.4451 22 6 7.6995 -6.0574 0.3506 23 6 6.3308 -5.9800 0.2335 24 7 5.7196 -4.8139 0.1284 25 6 2.1950 -1.1955 0.0005 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3632 -0.8900 -0.5138 29 1 1.6536 2.1325 -0.0004 30 1 5.3622 0.0256 0.0014 31 1 6.1644 -1.6305 -0.0829 32 1 8.3005 -2.7066 0.2291 33 1 10.3298 -2.1119 2.0388 34 1 8.1885 -7.0161 0.4408 35 1 5.7461 -6.8881 0.2310 36 1 1.6546 -2.1307 -0.0035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336346424.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:53 Heat of formation + Delta-G solvation = 0.060743 kcal Electronic energy + Delta-G solvation = -22399.478319 eV Core-core repulsion = 18873.489776 eV Total energy + Delta-G solvation = -3525.988543 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.66538 -40.37789 -39.23476 -37.53619 -36.18136 -35.62920 -33.91711 -32.47799 -32.06065 -30.40316 -27.98677 -27.90209 -25.60553 -23.86599 -22.99614 -22.94947 -21.19713 -19.59049 -19.02186 -17.66481 -17.46133 -16.95095 -16.48790 -16.31515 -16.26903 -16.05202 -15.69604 -15.27317 -14.93901 -14.71376 -14.35328 -14.23769 -14.19063 -13.71468 -13.27623 -13.18660 -12.87894 -12.76689 -12.66146 -12.55403 -12.28069 -12.19316 -12.02897 -11.88614 -11.55301 -11.21752 -11.19062 -10.04349 -9.87873 -9.78537 -9.70003 -8.90873 -8.54948 -6.60975 -0.40042 0.03208 0.75690 0.98855 0.99502 1.41459 1.51695 1.56756 1.80999 1.97741 2.21206 2.60814 2.84597 3.36499 3.59576 3.68594 3.92644 4.01338 4.12390 4.17329 4.24203 4.51641 4.70013 4.76342 4.77892 4.85466 4.88597 4.97558 5.06002 5.11348 5.18182 5.25868 5.36752 5.43822 5.58348 5.62807 5.92934 6.10265 6.40405 6.52440 6.77186 6.84540 7.13443 7.74685 8.32378 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.015095 B = 0.003417 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.450470 B = 8191.490173 C = 9954.943769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 C -0.080 4.080 4 C -0.041 4.041 5 Cl -0.057 7.057 6 C -0.090 4.090 7 C -0.125 4.125 8 C 0.541 3.459 9 O -0.516 6.516 10 N -0.646 5.646 11 C 0.327 3.673 12 C -0.246 4.246 13 C 0.111 3.889 14 C -0.485 4.485 15 H 0.084 0.916 16 C 0.033 3.967 17 N -0.827 5.827 18 Si 0.992 3.008 19 H -0.260 1.260 20 H -0.269 1.269 21 H -0.260 1.260 22 C -0.286 4.286 23 C 0.109 3.891 24 N -0.572 5.572 25 C -0.068 4.068 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.168 0.832 30 H 0.141 0.859 31 H 0.420 0.580 32 H 0.133 0.867 33 H 0.289 0.711 34 H 0.120 0.880 35 H 0.154 0.846 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.731 12.988 -1.928 17.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.074 4.074 3 C -0.098 4.098 4 C -0.068 4.068 5 Cl -0.028 7.028 6 C -0.110 4.110 7 C -0.128 4.128 8 C 0.329 3.671 9 O -0.390 6.390 10 N -0.293 5.293 11 C 0.101 3.899 12 C -0.272 4.272 13 C 0.103 3.897 14 C -0.517 4.517 15 H 0.102 0.898 16 C -0.181 4.181 17 N -0.453 5.453 18 Si 0.813 3.187 19 H -0.185 1.185 20 H -0.194 1.194 21 H -0.183 1.183 22 C -0.310 4.310 23 C -0.045 4.045 24 N -0.292 5.292 25 C -0.087 4.087 26 H 0.106 0.894 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.186 0.814 30 H 0.158 0.842 31 H 0.259 0.741 32 H 0.151 0.849 33 H 0.100 0.900 34 H 0.138 0.862 35 H 0.171 0.829 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.041 12.660 -1.868 18.271 hybrid contribution 2.325 0.188 0.279 2.349 sum -10.716 12.848 -1.589 16.805 Atomic orbital electron populations 1.20908 0.87341 1.04621 1.04020 1.20142 0.98413 0.90827 0.98023 1.21476 0.91281 0.99947 0.97107 1.20827 0.93249 0.86942 1.05747 1.98389 1.77236 1.30251 1.96922 1.21266 1.00867 0.90200 0.98634 1.19746 0.94916 0.91173 1.06996 1.18848 0.81878 0.89632 0.76704 1.90817 1.68046 1.33406 1.46684 1.43330 1.06500 1.08134 1.71367 1.18455 0.88553 0.86042 0.96834 1.21815 0.90856 1.01001 1.13510 1.18053 0.94507 0.90840 0.86302 1.19828 0.91460 1.06919 1.33444 0.89806 1.26819 1.05719 0.93087 0.92515 1.69749 1.39676 1.07567 1.28345 0.85034 0.75281 0.79660 0.78735 1.18452 1.19381 1.18334 1.22222 0.94829 0.98836 1.15093 1.22266 0.92137 0.94525 0.95528 1.67328 1.40122 0.97453 1.24302 1.21386 0.91892 0.99800 0.95595 0.89437 0.88889 0.90629 0.81423 0.84153 0.74107 0.84923 0.90012 0.86191 0.82911 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 71.24 0.71 -0.53 16 2 C -0.07 -1.33 5.87 -19.91 -0.12 -1.45 16 3 C -0.08 -1.34 9.47 22.35 0.21 -1.13 16 4 C -0.04 -0.85 6.31 22.29 0.14 -0.71 16 5 Cl -0.06 -1.09 28.95 -2.72 -0.08 -1.17 16 6 C -0.09 -2.27 9.32 22.55 0.21 -2.06 16 7 C -0.12 -3.74 5.87 -20.09 -0.12 -3.86 16 8 C 0.54 21.64 7.73 86.78 0.67 22.31 16 9 O -0.52 -24.51 14.60 -3.89 -0.06 -24.56 16 10 N -0.65 -26.63 5.33 -311.31 -1.66 -28.29 16 11 C 0.33 16.38 7.41 132.78 0.98 17.36 16 12 C -0.25 -12.85 8.61 22.99 0.20 -12.65 16 13 C 0.11 5.96 5.59 -21.11 -0.12 5.85 16 14 C -0.49 -25.15 9.12 23.52 0.21 -24.94 16 15 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 16 C 0.03 1.61 5.43 85.29 0.46 2.07 16 17 N -0.83 -40.92 10.59 21.84 0.23 -40.69 16 18 Si 0.99 36.49 29.56 68.60 2.03 38.52 16 19 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 20 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 21 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 22 C -0.29 -14.16 9.90 22.84 0.23 -13.93 16 23 C 0.11 5.27 11.15 84.50 0.94 6.22 16 24 N -0.57 -29.83 7.85 -193.57 -1.52 -31.35 16 25 C -0.07 -1.72 9.24 22.53 0.21 -1.51 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.09 0.64 8.08 -2.39 -0.02 0.62 16 28 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 29 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 30 H 0.14 3.33 6.42 -2.91 -0.02 3.31 16 31 H 0.42 14.47 6.75 -92.71 -0.63 13.84 16 32 H 0.13 6.92 6.13 -2.91 -0.02 6.90 16 33 H 0.29 12.90 8.29 -92.71 -0.77 12.13 16 34 H 0.12 5.36 8.06 -2.91 -0.02 5.34 16 35 H 0.15 6.28 8.06 -2.91 -0.02 6.26 16 36 H 0.14 3.59 7.65 -2.91 -0.02 3.57 16 Total: -1.00 -67.28 330.82 4.29 -62.99 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.52 Total: 33.52 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 4.83 Total: -8.96 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -2.95 Total: -100.33 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.06 Total: -24.56 kcal Atomic # 14 Polarization: 36.49 SS G_CDS: 2.03 Total: 38.52 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -67.28 4.29 -62.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336346424.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.048 kcal (2) G-P(sol) polarization free energy of solvation -67.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds