Wall clock time and date at job start Tue Mar 31 2020 10:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30104 * 124.97391 * 2 1 4 4 C 1.35822 * 109.58802 * 180.02562 * 3 2 1 5 5 C 1.39800 * 133.51360 * 180.02562 * 4 3 2 6 6 C 1.37715 * 120.03307 * 179.97438 * 5 4 3 7 7 C 1.38508 * 120.67642 * 359.97438 * 6 5 4 8 8 C 1.39033 * 120.31247 * 359.97438 * 7 6 5 9 9 C 1.48269 * 120.21189 * 180.02562 * 8 7 6 10 10 N 1.30824 * 126.42214 * 180.02562 * 9 8 7 11 11 O 1.21293 * 110.08772 * 179.97438 * 10 9 8 12 12 C 1.33672 * 110.03727 * 0.02562 * 11 10 9 13 13 C 1.50701 * 126.43086 * 179.97438 * 12 11 10 14 14 S 1.81000 * 109.46887 * 270.02257 * 13 12 11 15 15 C 1.76203 * 99.99981 * 179.97438 * 14 13 12 16 16 H 1.08009 * 119.99987 * 0.02562 * 15 14 13 17 17 C 1.38796 * 120.00276 * 180.02562 * 15 14 13 18 18 N 1.31628 * 120.00054 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99867 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47076 * 89.99914 * 19 17 15 21 21 H 1.48499 * 109.47232 * 210.00150 * 19 17 15 22 22 H 1.48505 * 109.47149 * 330.00099 * 19 17 15 23 23 N 1.30968 * 107.13970 * 359.97438 * 12 11 10 24 24 C 1.39893 * 119.57435 * 0.27177 * 8 7 6 25 25 N 1.36059 * 124.97586 * 180.02562 * 2 1 3 26 26 H 0.97001 * 126.32371 * 359.97438 * 25 2 1 27 27 H 1.09003 * 109.47144 * 89.97991 * 1 2 3 28 28 H 1.09000 * 109.47095 * 209.98142 * 1 2 3 29 29 H 1.09004 * 109.47010 * 329.97934 * 1 2 3 30 30 H 1.08006 * 119.98432 * 359.97339 * 5 4 3 31 31 H 1.07993 * 119.66245 * 179.97438 * 6 5 4 32 32 H 1.07996 * 119.84351 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.47134 * 30.02139 * 13 12 11 34 34 H 1.08998 * 109.47221 * 150.02100 * 13 12 11 35 35 H 0.96998 * 119.99904 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2527 1.0661 0.0000 4 6 3.5623 0.7057 -0.0006 5 6 4.7593 1.4279 -0.0004 6 6 5.9654 0.7630 -0.0006 7 6 6.0091 -0.6214 -0.0005 8 6 4.8316 -1.3607 0.0004 9 6 4.8811 -2.8425 0.0011 10 7 3.8549 -3.6539 0.0015 11 8 4.2346 -4.8059 0.0015 12 6 5.5707 -4.8477 0.0017 13 6 6.4272 -6.0876 0.0023 14 16 6.7694 -6.5836 1.7091 15 6 7.7567 -8.0141 1.4199 16 1 7.9726 -8.3259 0.4086 17 6 8.2571 -8.7402 2.4917 18 7 8.9952 -9.8085 2.2757 19 14 7.8844 -8.2006 4.2408 20 1 6.6331 -8.8524 4.7039 21 1 9.0064 -8.5948 5.1302 22 1 7.7175 -6.7254 4.2788 23 7 5.9956 -3.6089 0.0012 24 6 3.6000 -0.6974 -0.0046 25 7 2.2869 -1.1149 -0.0005 26 1 1.9759 -2.0337 -0.0006 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 4.7383 2.5077 -0.0001 31 1 6.8865 1.3268 -0.0009 32 1 6.9624 -1.1290 -0.0011 33 1 5.9017 -6.8925 -0.5116 34 1 7.3662 -5.8808 -0.5111 35 1 9.3452 -10.3158 3.0247 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340677096.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:54 Heat of formation + Delta-G solvation = 130.711050 kcal Electronic energy + Delta-G solvation = -22200.269974 eV Core-core repulsion = 18714.283311 eV Total energy + Delta-G solvation = -3485.986663 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.44554 -42.40674 -37.83874 -35.77511 -34.05770 -32.72741 -32.61561 -31.69851 -30.22952 -28.77894 -27.84545 -25.81807 -24.68186 -23.28491 -22.21222 -21.32020 -20.99865 -18.32966 -18.08798 -17.81906 -17.51533 -16.88993 -15.80648 -15.56812 -15.22451 -14.93834 -14.57371 -14.52660 -14.20286 -13.54749 -13.52631 -13.32652 -13.05246 -12.97778 -12.33126 -12.29774 -12.14992 -11.97435 -11.72292 -11.52396 -11.24252 -11.15654 -11.00665 -10.74499 -10.37706 -10.13624 -9.79462 -9.18247 -8.86660 -8.59506 -8.24748 -7.21911 -6.45041 -4.22667 0.31348 1.14037 1.26446 2.07582 2.59075 2.62891 2.81320 2.95381 3.18971 3.33137 3.36739 3.43790 3.64829 3.78623 3.93201 4.15516 4.40724 4.51553 4.80418 4.81624 4.85045 4.93997 5.03910 5.05159 5.14813 5.21414 5.40858 5.45104 5.52763 5.62540 5.76908 5.90949 5.98045 6.12373 6.22467 6.25759 6.54819 7.05798 7.57458 7.77738 8.15546 8.26814 8.98675 10.63733 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.023056 B = 0.002850 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.136263 B = 9821.735482 C =10226.001463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.282 3.718 3 N -0.491 5.491 4 C 0.043 3.957 5 C -0.046 4.046 6 C -0.131 4.131 7 C -0.050 4.050 8 C -0.013 4.013 9 C 0.215 3.785 10 N -0.403 5.403 11 O 0.081 5.919 12 C 0.232 3.768 13 C -0.014 4.014 14 S -0.162 6.162 15 C -0.513 4.513 16 H 0.097 0.903 17 C 0.099 3.901 18 N -0.872 5.872 19 Si 0.855 3.145 20 H -0.266 1.266 21 H -0.271 1.271 22 H -0.238 1.238 23 N -0.468 5.468 24 C 0.078 3.922 25 N -0.589 5.589 26 H 0.429 0.571 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.581 18.881 -5.639 23.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.015 3.985 3 N -0.212 5.212 4 C -0.075 4.075 5 C -0.067 4.067 6 C -0.151 4.151 7 C -0.072 4.072 8 C -0.018 4.018 9 C -0.055 4.055 10 N -0.114 5.114 11 O 0.024 5.976 12 C 0.011 3.989 13 C -0.163 4.163 14 S 0.063 5.937 15 C -0.661 4.661 16 H 0.114 0.886 17 C -0.111 4.111 18 N -0.508 5.508 19 Si 0.680 3.320 20 H -0.191 1.191 21 H -0.196 1.196 22 H -0.162 1.162 23 N -0.202 5.202 24 C -0.035 4.035 25 N -0.200 5.200 26 H 0.270 0.730 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.153 0.847 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.589 20.613 -4.604 25.115 hybrid contribution 0.586 -2.205 -0.254 2.296 sum -13.003 18.408 -4.858 23.055 Atomic orbital electron populations 1.20397 0.83966 1.04872 1.04376 1.23681 0.95835 0.80948 0.98068 1.70447 1.00510 1.27424 1.22805 1.18977 0.92358 0.89450 1.06678 1.20438 0.88919 1.00009 0.97291 1.20882 0.97766 0.93600 1.02879 1.21118 0.96916 0.93694 0.95465 1.16211 0.91027 0.84929 1.09659 1.23820 0.84419 0.96351 1.00913 1.74620 1.23477 0.89917 1.23345 1.85241 1.24122 1.22411 1.65845 1.28190 0.81790 0.95825 0.93099 1.21758 0.99253 0.90434 1.04823 1.84689 1.69156 1.37914 1.01970 1.22067 1.36370 1.09607 0.98019 0.88555 1.24689 0.93356 0.93781 0.99255 1.69910 1.32230 1.15962 1.32658 0.86770 0.79204 0.81811 0.84223 1.19072 1.19566 1.16176 1.72047 1.27247 0.99946 1.20967 1.18609 0.84665 0.95066 1.05208 1.43151 1.04654 1.10533 1.61687 0.73049 0.89215 0.90003 0.88375 0.84720 0.84225 0.83559 0.87060 0.86142 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.51 36.00 0.38 -0.08 16 2 C 0.28 3.04 8.08 -154.81 -1.25 1.79 16 3 N -0.49 -6.41 11.28 -8.24 -0.09 -6.51 16 4 C 0.04 0.58 7.22 -84.72 -0.61 -0.03 16 5 C -0.05 -0.50 10.09 -39.19 -0.40 -0.90 16 6 C -0.13 -1.29 10.00 -39.67 -0.40 -1.69 16 7 C -0.05 -0.62 9.69 -39.19 -0.38 -1.00 16 8 C -0.01 -0.19 5.88 -104.86 -0.62 -0.81 16 9 C 0.21 3.51 7.80 -156.10 -1.22 2.29 16 10 N -0.40 -6.50 10.88 30.98 0.34 -6.16 16 11 O 0.08 1.35 11.29 18.03 0.20 1.55 16 12 C 0.23 3.96 7.75 -12.98 -0.10 3.86 16 13 C -0.01 -0.25 6.30 36.01 0.23 -0.02 16 14 S -0.16 -3.69 19.39 -107.50 -2.08 -5.77 16 15 C -0.51 -13.66 10.04 30.94 0.31 -13.35 16 16 H 0.10 2.67 8.03 -52.48 -0.42 2.25 16 17 C 0.10 2.72 5.50 -17.43 -0.10 2.62 16 18 N -0.87 -24.95 13.97 55.49 0.78 -24.17 16 19 Si 0.86 20.34 27.74 -169.99 -4.71 15.63 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.24 -5.59 6.74 56.52 0.38 -5.21 16 23 N -0.47 -8.11 11.25 -9.88 -0.11 -8.22 16 24 C 0.08 1.08 6.96 -83.77 -0.58 0.50 16 25 N -0.59 -7.05 6.09 -7.84 -0.05 -7.10 16 26 H 0.43 4.70 7.90 -40.82 -0.32 4.38 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 31 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.15 1.71 7.86 -52.49 -0.41 1.30 16 33 H 0.11 1.76 8.14 -51.91 -0.42 1.34 16 34 H 0.12 2.03 8.14 -51.92 -0.42 1.60 16 35 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 327.60 15.07 4.94 4.94 Total: -1.00 -31.71 327.60 -8.80 -40.52 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -3.27 Total: 2.12 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -4.73 Total: -6.82 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.86 Total: -52.16 kcal Atomic # 8 Polarization: 1.35 SS G_CDS: 0.20 Total: 1.55 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.71 Total: 15.63 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -2.08 Total: -5.77 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.71 -8.80 -40.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340677096.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.228 kcal (2) G-P(sol) polarization free energy of solvation -31.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds