Wall clock time and date at job start Tue Mar 31 2020 10:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30104 * 124.97391 * 2 1 4 4 C 1.35822 * 109.58802 * 180.02562 * 3 2 1 5 5 C 1.39800 * 133.51360 * 180.02562 * 4 3 2 6 6 C 1.37715 * 120.03307 * 179.97438 * 5 4 3 7 7 C 1.38508 * 120.67642 * 359.97438 * 6 5 4 8 8 C 1.39033 * 120.31247 * 359.97438 * 7 6 5 9 9 C 1.48269 * 120.21189 * 180.02562 * 8 7 6 10 10 N 1.30824 * 126.42214 * 180.02562 * 9 8 7 11 11 O 1.21293 * 110.08772 * 179.97438 * 10 9 8 12 12 C 1.33672 * 110.03727 * 0.02562 * 11 10 9 13 13 C 1.50701 * 126.43086 * 179.97438 * 12 11 10 14 14 S 1.81000 * 109.46887 * 270.02257 * 13 12 11 15 15 C 1.76203 * 99.99981 * 179.97438 * 14 13 12 16 16 H 1.08009 * 119.99987 * 0.02562 * 15 14 13 17 17 C 1.38796 * 120.00276 * 180.02562 * 15 14 13 18 18 N 1.31628 * 120.00054 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99867 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47076 * 89.99914 * 19 17 15 21 21 H 1.48499 * 109.47232 * 210.00150 * 19 17 15 22 22 H 1.48505 * 109.47149 * 330.00099 * 19 17 15 23 23 N 1.30968 * 107.13970 * 359.97438 * 12 11 10 24 24 C 1.39893 * 119.57435 * 0.27177 * 8 7 6 25 25 N 1.36059 * 124.97586 * 180.02562 * 2 1 3 26 26 H 0.97001 * 126.32371 * 359.97438 * 25 2 1 27 27 H 1.09003 * 109.47144 * 89.97991 * 1 2 3 28 28 H 1.09000 * 109.47095 * 209.98142 * 1 2 3 29 29 H 1.09004 * 109.47010 * 329.97934 * 1 2 3 30 30 H 1.08006 * 119.98432 * 359.97339 * 5 4 3 31 31 H 1.07993 * 119.66245 * 179.97438 * 6 5 4 32 32 H 1.07996 * 119.84351 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.47134 * 30.02139 * 13 12 11 34 34 H 1.08998 * 109.47221 * 150.02100 * 13 12 11 35 35 H 0.96998 * 119.99904 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2527 1.0661 0.0000 4 6 3.5623 0.7057 -0.0006 5 6 4.7593 1.4279 -0.0004 6 6 5.9654 0.7630 -0.0006 7 6 6.0091 -0.6214 -0.0005 8 6 4.8316 -1.3607 0.0004 9 6 4.8811 -2.8425 0.0011 10 7 3.8549 -3.6539 0.0015 11 8 4.2346 -4.8059 0.0015 12 6 5.5707 -4.8477 0.0017 13 6 6.4272 -6.0876 0.0023 14 16 6.7694 -6.5836 1.7091 15 6 7.7567 -8.0141 1.4199 16 1 7.9726 -8.3259 0.4086 17 6 8.2571 -8.7402 2.4917 18 7 8.9952 -9.8085 2.2757 19 14 7.8844 -8.2006 4.2408 20 1 6.6331 -8.8524 4.7039 21 1 9.0064 -8.5948 5.1302 22 1 7.7175 -6.7254 4.2788 23 7 5.9956 -3.6089 0.0012 24 6 3.6000 -0.6974 -0.0046 25 7 2.2869 -1.1149 -0.0005 26 1 1.9759 -2.0337 -0.0006 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 4.7383 2.5077 -0.0001 31 1 6.8865 1.3268 -0.0009 32 1 6.9624 -1.1290 -0.0011 33 1 5.9017 -6.8925 -0.5116 34 1 7.3662 -5.8808 -0.5111 35 1 9.3452 -10.3158 3.0247 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340677096.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:54 Heat of formation + Delta-G solvation = 110.172059 kcal Electronic energy + Delta-G solvation = -22201.160612 eV Core-core repulsion = 18714.283311 eV Total energy + Delta-G solvation = -3486.877301 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.73806 -43.28271 -38.76017 -37.00441 -35.21597 -34.70152 -33.79726 -32.37730 -31.19834 -30.13178 -28.63348 -27.89624 -25.83209 -24.42810 -23.16860 -22.36106 -21.92307 -20.03489 -19.40112 -18.85354 -18.71594 -18.01115 -17.16219 -16.66629 -16.45160 -16.33773 -16.08587 -15.59503 -15.31541 -14.92657 -14.67984 -14.28603 -14.19095 -13.61672 -13.55557 -13.51404 -13.32110 -13.07712 -13.02865 -12.95573 -12.82888 -12.49184 -12.31171 -12.03772 -11.81576 -11.29509 -11.23343 -11.19476 -10.66538 -9.48418 -9.19410 -9.11091 -8.53119 -6.28299 -0.70010 -0.15102 0.32209 0.88242 1.20184 1.30933 1.42508 1.46883 1.65539 1.77298 1.80779 2.20185 2.23939 2.54879 2.71425 2.72579 2.85789 3.07196 3.53505 3.67882 3.94599 4.07559 4.10164 4.15672 4.25745 4.37011 4.51107 4.54304 4.64172 4.65474 4.78356 4.93879 5.00041 5.23992 5.35455 5.35579 5.69603 5.71966 6.12981 6.22537 6.70399 6.85943 6.90193 8.58956 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.023056 B = 0.002850 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.136263 B = 9821.735482 C =10226.001463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.286 3.714 3 N -0.517 5.517 4 C 0.023 3.977 5 C -0.043 4.043 6 C -0.119 4.119 7 C -0.051 4.051 8 C -0.044 4.044 9 C 0.214 3.786 10 N -0.404 5.404 11 O 0.080 5.920 12 C 0.227 3.773 13 C 0.002 3.998 14 S -0.177 6.177 15 C -0.520 4.520 16 H 0.072 0.928 17 C 0.049 3.951 18 N -0.912 5.912 19 Si 0.911 3.089 20 H -0.261 1.261 21 H -0.261 1.261 22 H -0.234 1.234 23 N -0.476 5.476 24 C 0.057 3.943 25 N -0.592 5.592 26 H 0.431 0.569 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.160 0.840 31 H 0.177 0.823 32 H 0.149 0.851 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.533 20.982 -5.372 25.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.019 3.981 3 N -0.239 5.239 4 C -0.095 4.095 5 C -0.063 4.063 6 C -0.139 4.139 7 C -0.073 4.073 8 C -0.049 4.049 9 C -0.055 4.055 10 N -0.115 5.115 11 O 0.023 5.977 12 C 0.006 3.994 13 C -0.147 4.147 14 S 0.049 5.951 15 C -0.667 4.667 16 H 0.090 0.910 17 C -0.157 4.157 18 N -0.550 5.550 19 Si 0.733 3.267 20 H -0.186 1.186 21 H -0.186 1.186 22 H -0.158 1.158 23 N -0.211 5.211 24 C -0.056 4.056 25 N -0.204 5.204 26 H 0.272 0.728 27 H 0.125 0.875 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.177 0.823 31 H 0.195 0.805 32 H 0.166 0.834 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.552 22.712 -4.343 27.321 hybrid contribution 0.814 -2.720 -0.471 2.878 sum -13.738 19.992 -4.814 24.731 Atomic orbital electron populations 1.20637 0.80679 1.06235 1.05886 1.24582 0.97489 0.80107 0.95933 1.70470 1.00647 1.28381 1.24415 1.19445 0.93333 0.89566 1.07144 1.20850 0.88359 1.01305 0.95806 1.21247 0.98974 0.92658 1.01055 1.21337 0.96297 0.94821 0.94825 1.16430 0.92208 0.84036 1.12260 1.24210 0.83937 0.97291 1.00060 1.74617 1.23395 0.89715 1.23746 1.85235 1.23771 1.22758 1.65916 1.27959 0.82041 0.95557 0.93844 1.21657 1.00269 0.91351 1.01411 1.84454 1.68269 1.35914 1.06469 1.22233 1.36439 1.11000 0.97047 0.90977 1.25519 0.93313 0.93868 1.03040 1.69997 1.33655 1.17295 1.34022 0.85926 0.79373 0.81566 0.79857 1.18553 1.18576 1.15801 1.72033 1.27891 1.00137 1.21028 1.18796 0.85173 0.95609 1.06069 1.43256 1.04363 1.10974 1.61822 0.72836 0.87468 0.88175 0.87411 0.82256 0.80535 0.83368 0.85078 0.85187 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.51 71.24 0.75 0.01 16 2 C 0.29 5.82 8.08 137.92 1.11 6.94 16 3 N -0.52 -12.96 11.28 -179.99 -2.03 -14.99 16 4 C 0.02 0.59 7.22 39.42 0.28 0.87 16 5 C -0.04 -0.84 10.09 22.52 0.23 -0.61 16 6 C -0.12 -2.06 10.00 22.21 0.22 -1.84 16 7 C -0.05 -1.19 9.69 22.53 0.22 -0.97 16 8 C -0.04 -1.25 5.88 -20.02 -0.12 -1.37 16 9 C 0.21 6.91 7.80 137.22 1.07 7.98 16 10 N -0.40 -12.82 10.88 -59.04 -0.64 -13.46 16 11 O 0.08 2.58 11.29 74.58 0.84 3.42 16 12 C 0.23 7.57 7.75 88.36 0.68 8.25 16 13 C 0.00 0.06 6.30 71.24 0.45 0.51 16 14 S -0.18 -7.89 19.39 -56.49 -1.10 -8.99 16 15 C -0.52 -27.86 10.04 67.95 0.68 -27.18 16 16 H 0.07 4.09 8.03 -2.91 -0.02 4.07 16 17 C 0.05 2.69 5.50 84.86 0.47 3.15 16 18 N -0.91 -52.89 13.97 21.65 0.30 -52.59 16 19 Si 0.91 41.72 27.74 68.60 1.90 43.62 16 20 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 21 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 22 H -0.23 -10.50 6.74 99.48 0.67 -9.83 16 23 N -0.48 -16.17 11.25 -302.43 -3.40 -19.57 16 24 C 0.06 1.55 6.96 39.13 0.27 1.82 16 25 N -0.59 -13.81 6.09 -178.72 -1.09 -14.90 16 26 H 0.43 9.24 7.90 -92.71 -0.73 8.50 16 27 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 31 H 0.18 1.68 8.06 -2.91 -0.02 1.65 16 32 H 0.15 3.29 7.86 -2.91 -0.02 3.27 16 33 H 0.13 4.00 8.14 -2.39 -0.02 3.98 16 34 H 0.13 4.25 8.14 -2.40 -0.02 4.23 16 35 H 0.28 14.95 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -68.68 327.60 1.50 -67.18 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.39 Total: 12.71 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 6.32 Total: -2.44 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -6.86 Total: -115.51 kcal Atomic # 8 Polarization: 2.58 SS G_CDS: 0.84 Total: 3.42 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.90 Total: 43.62 kcal Atomic # 16 Polarization: -7.89 SS G_CDS: -1.10 Total: -8.99 kcal Total: -68.68 1.50 -67.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340677096.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.349 kcal (2) G-P(sol) polarization free energy of solvation -68.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds