Wall clock time and date at job start Tue Mar 31 2020 10:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.28877 * 124.77228 * 2 1 4 4 C 1.32455 * 117.10987 * 180.02562 * 3 2 1 5 5 C 1.48532 * 122.93935 * 179.97438 * 4 3 2 6 6 C 1.36557 * 126.22113 * 185.04567 * 5 4 3 7 7 N 1.35550 * 108.72787 * 180.26158 * 6 5 4 8 8 H 0.97005 * 125.55921 * 179.70127 * 7 6 5 9 9 C 1.37692 * 108.88277 * 359.57412 * 7 6 5 10 10 C 1.46571 * 126.09983 * 180.18334 * 9 7 6 11 11 O 1.21750 * 119.99872 * 158.60890 * 10 9 7 12 12 N 1.34771 * 120.00182 * 338.61658 * 10 9 7 13 13 C 1.36878 * 120.00327 * 183.94819 * 12 10 9 14 14 H 1.08000 * 119.99686 * 323.11868 * 13 12 10 15 15 C 1.39002 * 120.00560 * 143.11460 * 13 12 10 16 16 N 1.31401 * 119.99828 * 37.92857 * 15 13 12 17 17 Si 1.86793 * 120.00306 * 217.93290 * 15 13 12 18 18 H 1.48507 * 109.47342 * 89.99585 * 17 15 13 19 19 H 1.48500 * 109.47446 * 210.00102 * 17 15 13 20 20 H 1.48504 * 109.47278 * 330.00142 * 17 15 13 21 21 C 1.46498 * 120.00293 * 3.94249 * 12 10 9 22 22 C 1.47193 * 109.47117 * 95.19346 * 21 12 10 23 23 N 9.43306 * 146.31724 * 344.88542 * 2 1 3 24 24 C 1.37816 * 107.80027 * 0.42351 * 9 7 6 25 25 C 1.34716 * 114.11680 * 0.24138 * 4 3 2 26 26 S 1.70919 * 124.77284 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47021 * 90.00152 * 1 2 3 28 28 H 1.08997 * 109.47540 * 210.00471 * 1 2 3 29 29 H 1.09005 * 109.47232 * 330.00447 * 1 2 3 30 30 H 1.07998 * 125.63197 * 0.02562 * 6 5 4 31 31 H 0.96994 * 120.00021 * 180.02562 * 16 15 13 32 32 H 1.09001 * 109.47705 * 215.20094 * 21 12 10 33 33 H 1.09006 * 109.47143 * 335.19634 * 21 12 10 34 34 H 1.07996 * 126.48481 * 179.73814 * 24 9 7 35 35 H 1.08001 * 126.05161 * 179.75370 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0586 0.0000 4 6 3.5547 0.8820 -0.0005 5 6 4.5213 2.0098 -0.0012 6 6 5.8796 1.9082 -0.0986 7 7 6.4132 3.1536 -0.0574 8 1 7.3591 3.3639 -0.1037 9 6 5.3936 4.0717 0.0581 10 6 5.5465 5.5276 0.1308 11 8 4.6117 6.2529 -0.1558 12 7 6.7221 6.0633 0.5148 13 6 6.8412 7.4191 0.6608 14 1 6.3277 8.0826 -0.0193 15 6 7.6229 7.9420 1.6843 16 7 8.7504 7.3541 2.0157 17 14 7.0707 9.4802 2.5888 18 1 6.2384 9.0956 3.7571 19 1 8.2616 10.2342 3.0561 20 1 6.2728 10.3338 1.6723 21 6 7.8724 5.1947 0.7762 22 6 8.7101 5.1132 -0.4315 23 7 9.3564 5.0505 -1.3641 24 6 4.2039 3.3772 0.0986 25 6 3.9363 -0.4100 -0.0062 26 16 2.4818 -1.4040 -0.0006 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8901 0.5138 30 1 6.4368 0.9875 -0.1893 31 1 9.2958 7.7188 2.7301 32 1 8.4588 5.6055 1.5981 33 1 7.5217 4.1977 1.0430 34 1 3.2152 3.8019 0.1897 35 1 4.9537 -0.7722 -0.0113 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355734943.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:35 Heat of formation + Delta-G solvation = 118.284774 kcal Electronic energy + Delta-G solvation = -22709.766267 eV Core-core repulsion = 19223.240760 eV Total energy + Delta-G solvation = -3486.525507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.23743 -39.55768 -38.24447 -36.21019 -34.71469 -33.05486 -32.13672 -30.53202 -29.29737 -27.99937 -27.54229 -25.12086 -24.14798 -21.78183 -20.84854 -19.78875 -19.26794 -18.24408 -18.00146 -16.83926 -16.26952 -15.85973 -15.19588 -15.05205 -14.85833 -14.27336 -14.22873 -13.90128 -13.49673 -13.44436 -13.11980 -12.99028 -12.72613 -12.65719 -12.37363 -12.19063 -12.15944 -12.02690 -11.65759 -11.53336 -11.37144 -10.78131 -10.53813 -10.40304 -9.63706 -9.58694 -9.43349 -9.01274 -8.88393 -8.30464 -8.16005 -7.68879 -6.80517 -4.18487 0.63990 1.32439 1.69382 1.96165 2.35915 3.06414 3.13366 3.20355 3.22812 3.30739 3.43705 3.61486 3.92453 4.00405 4.12139 4.44280 4.62684 4.87506 4.95926 5.10805 5.16917 5.25121 5.26835 5.33748 5.41753 5.62479 5.68688 5.82018 5.96341 6.32476 6.50992 6.66840 6.95370 7.16995 7.35798 7.53639 7.81220 7.92009 8.14672 8.19448 8.81592 8.98177 9.58586 10.21068 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.021511 B = 0.003180 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.347194 B = 8802.799644 C = 9642.544241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.054 3.946 3 N -0.461 5.461 4 C 0.168 3.832 5 C -0.121 4.121 6 C 0.024 3.976 7 N -0.543 5.543 8 H 0.421 0.579 9 C -0.017 4.017 10 C 0.532 3.468 11 O -0.548 6.548 12 N -0.436 5.436 13 C -0.333 4.333 14 H 0.106 0.894 15 C 0.063 3.937 16 N -0.849 5.849 17 Si 0.915 3.085 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.265 1.265 21 C 0.134 3.866 22 C 0.207 3.793 23 N -0.456 5.456 24 C -0.093 4.093 25 C -0.272 4.272 26 S 0.095 5.905 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.169 0.831 31 H 0.279 0.721 32 H 0.190 0.810 33 H 0.090 0.910 34 H 0.150 0.850 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.790 -17.519 1.576 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.226 4.226 3 N -0.176 5.176 4 C 0.038 3.962 5 C -0.131 4.131 6 C -0.114 4.114 7 N -0.146 5.146 8 H 0.267 0.733 9 C -0.130 4.130 10 C 0.320 3.680 11 O -0.428 6.428 12 N -0.157 5.157 13 C -0.458 4.458 14 H 0.124 0.876 15 C -0.144 4.144 16 N -0.485 5.485 17 Si 0.740 3.260 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.189 1.189 21 C 0.006 3.994 22 C -0.111 4.111 23 N -0.135 5.135 24 C -0.119 4.119 25 C -0.411 4.411 26 S 0.349 5.651 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.186 0.814 31 H 0.091 0.909 32 H 0.205 0.795 33 H 0.107 0.893 34 H 0.168 0.832 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.443 -17.650 0.171 19.156 hybrid contribution 0.977 1.323 0.705 1.789 sum -6.465 -16.327 0.876 17.582 Atomic orbital electron populations 1.20452 0.85262 1.04195 1.03881 1.26970 1.01722 0.90714 1.03151 1.66147 1.04525 1.31145 1.15788 1.18088 0.88115 0.90979 0.98994 1.17187 0.90242 0.91341 1.14341 1.21814 0.93362 0.88502 1.07693 1.43210 1.09511 1.05997 1.55866 0.73340 1.20999 0.87676 0.90447 1.13840 1.16929 0.83587 0.84341 0.83101 1.90725 1.39684 1.60163 1.52227 1.43442 1.05335 1.06647 1.60236 1.19381 1.32862 0.80169 1.13427 0.87594 1.25491 0.93225 1.00138 0.95535 1.69380 1.08171 1.42343 1.28649 0.86139 0.78842 0.80777 0.80285 1.19624 1.21121 1.18864 1.21210 0.88812 0.96666 0.92661 1.30388 0.93654 0.92276 0.94747 1.81050 1.11122 1.09569 1.11791 1.21156 0.96992 0.90823 1.02943 1.26739 1.02603 0.95330 1.16425 1.83763 0.98249 1.13221 1.69902 0.89614 0.90226 0.89111 0.81398 0.90930 0.79460 0.89262 0.83202 0.80771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.46 36.00 0.38 -0.22 16 2 C 0.05 0.62 7.37 -13.52 -0.10 0.52 16 3 N -0.46 -6.88 10.44 -8.40 -0.09 -6.97 16 4 C 0.17 2.46 6.71 -84.60 -0.57 1.89 16 5 C -0.12 -1.93 6.08 -105.32 -0.64 -2.57 16 6 C 0.02 0.33 11.44 -16.52 -0.19 0.14 16 7 N -0.54 -8.65 4.84 -9.16 -0.04 -8.70 16 8 H 0.42 6.33 4.50 -40.82 -0.18 6.15 16 9 C -0.02 -0.33 6.50 -82.03 -0.53 -0.86 16 10 C 0.53 12.58 7.56 -12.90 -0.10 12.48 16 11 O -0.55 -14.75 16.79 5.14 0.09 -14.66 16 12 N -0.44 -10.24 2.58 -119.46 -0.31 -10.55 16 13 C -0.33 -8.52 8.82 -15.02 -0.13 -8.66 16 14 H 0.11 2.90 7.85 -52.49 -0.41 2.49 16 15 C 0.06 1.50 5.36 -17.45 -0.09 1.40 16 16 N -0.85 -19.64 10.42 55.50 0.58 -19.06 16 17 Si 0.91 19.15 29.68 -169.99 -5.05 14.11 16 18 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 19 H -0.29 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 21 C 0.13 2.64 5.08 -6.83 -0.03 2.60 16 22 C 0.21 4.25 14.23 -20.75 -0.30 3.96 16 23 N -0.46 -9.84 18.54 42.17 0.78 -9.06 16 24 C -0.09 -1.75 10.59 -38.80 -0.41 -2.16 16 25 C -0.27 -3.11 10.85 29.48 0.32 -2.79 16 26 S 0.09 0.91 23.16 -107.50 -2.49 -1.58 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.17 1.57 7.74 -52.49 -0.41 1.16 16 31 H 0.28 6.03 8.31 -40.82 -0.34 5.70 16 32 H 0.19 3.92 4.74 -51.93 -0.25 3.67 16 33 H 0.09 1.47 4.40 -51.93 -0.23 1.25 16 34 H 0.15 2.91 8.06 -52.49 -0.42 2.48 16 35 H 0.17 1.52 7.71 -52.49 -0.40 1.11 16 LS Contribution 326.53 15.07 4.92 4.92 Total: -1.00 -30.67 326.53 -6.71 -37.38 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -2.71 Total: 8.43 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -2.40 Total: 5.74 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 0.92 Total: -54.34 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.09 Total: -14.66 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.05 Total: 14.11 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.49 Total: -1.58 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.67 -6.71 -37.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355734943.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.665 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds