Wall clock time and date at job start Tue Mar 31 2020 10:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.28877 * 124.77228 * 2 1 4 4 C 1.32455 * 117.10987 * 180.02562 * 3 2 1 5 5 C 1.48532 * 122.93935 * 179.97438 * 4 3 2 6 6 C 1.36557 * 126.22113 * 185.04567 * 5 4 3 7 7 N 1.35550 * 108.72787 * 180.26158 * 6 5 4 8 8 H 0.97005 * 125.55921 * 179.70127 * 7 6 5 9 9 C 1.37692 * 108.88277 * 359.57412 * 7 6 5 10 10 C 1.46571 * 126.09983 * 180.18334 * 9 7 6 11 11 O 1.21750 * 119.99872 * 158.60890 * 10 9 7 12 12 N 1.34771 * 120.00182 * 338.61658 * 10 9 7 13 13 C 1.36878 * 120.00327 * 183.94819 * 12 10 9 14 14 H 1.08000 * 119.99686 * 323.11868 * 13 12 10 15 15 C 1.39002 * 120.00560 * 143.11460 * 13 12 10 16 16 N 1.31401 * 119.99828 * 37.92857 * 15 13 12 17 17 Si 1.86793 * 120.00306 * 217.93290 * 15 13 12 18 18 H 1.48507 * 109.47342 * 89.99585 * 17 15 13 19 19 H 1.48500 * 109.47446 * 210.00102 * 17 15 13 20 20 H 1.48504 * 109.47278 * 330.00142 * 17 15 13 21 21 C 1.46498 * 120.00293 * 3.94249 * 12 10 9 22 22 C 1.47193 * 109.47117 * 95.19346 * 21 12 10 23 23 N 9.43306 * 146.31724 * 344.88542 * 2 1 3 24 24 C 1.37816 * 107.80027 * 0.42351 * 9 7 6 25 25 C 1.34716 * 114.11680 * 0.24138 * 4 3 2 26 26 S 1.70919 * 124.77284 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47021 * 90.00152 * 1 2 3 28 28 H 1.08997 * 109.47540 * 210.00471 * 1 2 3 29 29 H 1.09005 * 109.47232 * 330.00447 * 1 2 3 30 30 H 1.07998 * 125.63197 * 0.02562 * 6 5 4 31 31 H 0.96994 * 120.00021 * 180.02562 * 16 15 13 32 32 H 1.09001 * 109.47705 * 215.20094 * 21 12 10 33 33 H 1.09006 * 109.47143 * 335.19634 * 21 12 10 34 34 H 1.07996 * 126.48481 * 179.73814 * 24 9 7 35 35 H 1.08001 * 126.05161 * 179.75370 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0586 0.0000 4 6 3.5547 0.8820 -0.0005 5 6 4.5213 2.0098 -0.0012 6 6 5.8796 1.9082 -0.0986 7 7 6.4132 3.1536 -0.0574 8 1 7.3591 3.3639 -0.1037 9 6 5.3936 4.0717 0.0581 10 6 5.5465 5.5276 0.1308 11 8 4.6117 6.2529 -0.1558 12 7 6.7221 6.0633 0.5148 13 6 6.8412 7.4191 0.6608 14 1 6.3277 8.0826 -0.0193 15 6 7.6229 7.9420 1.6843 16 7 8.7504 7.3541 2.0157 17 14 7.0707 9.4802 2.5888 18 1 6.2384 9.0956 3.7571 19 1 8.2616 10.2342 3.0561 20 1 6.2728 10.3338 1.6723 21 6 7.8724 5.1947 0.7762 22 6 8.7101 5.1132 -0.4315 23 7 9.3564 5.0505 -1.3641 24 6 4.2039 3.3772 0.0986 25 6 3.9363 -0.4100 -0.0062 26 16 2.4818 -1.4040 -0.0006 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8901 0.5138 30 1 6.4368 0.9875 -0.1893 31 1 9.2958 7.7188 2.7301 32 1 8.4588 5.6055 1.5981 33 1 7.5217 4.1977 1.0430 34 1 3.2152 3.8019 0.1897 35 1 4.9537 -0.7722 -0.0113 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355734943.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:34 Heat of formation + Delta-G solvation = 99.069518 kcal Electronic energy + Delta-G solvation = -22710.599503 eV Core-core repulsion = 19223.240760 eV Total energy + Delta-G solvation = -3487.358743 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.58347 -40.61313 -39.84333 -37.96691 -36.51763 -34.30200 -33.63458 -31.74890 -30.55278 -29.46996 -28.74108 -26.84509 -25.08035 -23.36427 -21.84925 -21.21711 -20.25800 -20.03324 -19.45536 -18.15052 -17.68653 -17.46800 -16.58815 -16.17355 -16.00549 -15.97130 -15.70136 -15.24610 -14.85967 -14.68846 -14.51649 -14.19904 -14.03957 -13.96910 -13.85052 -13.47966 -13.41056 -13.35336 -13.25134 -12.88299 -12.48175 -12.36990 -12.23419 -12.10222 -10.88236 -10.75988 -10.62920 -10.49021 -10.26982 -10.12021 -9.52983 -8.78679 -8.64089 -6.09925 -0.20622 0.54289 0.54642 0.84421 1.20788 1.37038 1.44485 1.49606 1.59728 1.66583 2.03570 2.19715 2.34120 2.57846 2.65346 2.95753 3.18738 3.25511 3.75465 4.03603 4.09257 4.12839 4.33547 4.45407 4.50654 4.67843 4.72472 4.82086 4.97517 5.09666 5.14174 5.33030 5.49566 5.61818 5.78780 6.04754 6.30756 6.38973 6.48009 6.95364 6.95687 7.13493 7.75861 8.36926 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.021511 B = 0.003180 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.347194 B = 8802.799644 C = 9642.544241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.035 3.965 3 N -0.511 5.511 4 C 0.131 3.869 5 C -0.133 4.133 6 C 0.062 3.938 7 N -0.538 5.538 8 H 0.426 0.574 9 C -0.050 4.050 10 C 0.523 3.477 11 O -0.600 6.600 12 N -0.443 5.443 13 C -0.377 4.377 14 H 0.072 0.928 15 C 0.045 3.955 16 N -0.848 5.848 17 Si 0.968 3.032 18 H -0.268 1.268 19 H -0.267 1.267 20 H -0.279 1.279 21 C 0.141 3.859 22 C 0.219 3.781 23 N -0.472 5.472 24 C -0.099 4.099 25 C -0.265 4.265 26 S 0.163 5.837 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.226 0.774 31 H 0.290 0.710 32 H 0.185 0.815 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.869 -21.006 2.455 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.243 4.243 3 N -0.227 5.227 4 C 0.001 3.999 5 C -0.142 4.142 6 C -0.076 4.076 7 N -0.141 5.141 8 H 0.272 0.728 9 C -0.162 4.162 10 C 0.314 3.686 11 O -0.484 6.484 12 N -0.162 5.162 13 C -0.502 4.502 14 H 0.089 0.911 15 C -0.162 4.162 16 N -0.483 5.483 17 Si 0.791 3.209 18 H -0.193 1.193 19 H -0.192 1.192 20 H -0.205 1.205 21 C 0.015 3.985 22 C -0.099 4.099 23 N -0.152 5.152 24 C -0.126 4.126 25 C -0.404 4.404 26 S 0.418 5.582 27 H 0.115 0.885 28 H 0.125 0.875 29 H 0.100 0.900 30 H 0.242 0.758 31 H 0.102 0.898 32 H 0.200 0.800 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -6.479 -21.165 1.063 22.160 hybrid contribution 0.632 2.221 0.426 2.348 sum -5.848 -18.944 1.490 19.882 Atomic orbital electron populations 1.20617 0.83292 1.05122 1.04894 1.27532 1.03249 0.91208 1.02347 1.66123 1.05340 1.33455 1.17787 1.18067 0.88076 0.91644 1.02077 1.17418 0.91812 0.90439 1.14553 1.22633 0.92774 0.88961 1.03212 1.43064 1.08971 1.06147 1.55925 0.72804 1.20294 0.89172 0.88843 1.17880 1.17503 0.82976 0.85989 0.82163 1.90662 1.41242 1.61986 1.54531 1.43479 1.06309 1.06458 1.59979 1.19152 1.34657 0.81216 1.15207 0.91053 1.25959 0.92781 1.02466 0.95041 1.69386 1.07652 1.42917 1.28352 0.85367 0.78676 0.78062 0.78758 1.19331 1.19231 1.20455 1.21196 0.87514 0.97813 0.91975 1.30424 0.93238 0.91685 0.94570 1.81052 1.11750 1.10278 1.12133 1.21143 0.95885 0.92791 1.02809 1.27177 1.05027 0.94628 1.13543 1.83517 0.96031 1.10735 1.67962 0.88467 0.87509 0.89987 0.75801 0.89803 0.79964 0.85708 0.85484 0.77676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.46 71.23 0.75 -0.34 16 2 C 0.03 0.74 7.37 88.54 0.65 1.40 16 3 N -0.51 -15.07 10.44 -180.47 -1.88 -16.96 16 4 C 0.13 3.62 6.71 40.99 0.27 3.90 16 5 C -0.13 -4.09 6.08 -20.31 -0.12 -4.22 16 6 C 0.06 1.50 11.44 83.73 0.96 2.46 16 7 N -0.54 -16.28 4.84 -182.91 -0.88 -17.17 16 8 H 0.43 11.94 4.50 -92.70 -0.42 11.52 16 9 C -0.05 -2.01 6.50 40.30 0.26 -1.75 16 10 C 0.52 26.12 7.56 86.42 0.65 26.78 16 11 O -0.60 -34.88 16.79 -4.51 -0.08 -34.95 16 12 N -0.44 -21.56 2.58 -650.07 -1.67 -23.24 16 13 C -0.38 -20.21 8.82 84.09 0.74 -19.47 16 14 H 0.07 4.23 7.85 -2.91 -0.02 4.21 16 15 C 0.04 2.17 5.36 84.94 0.45 2.62 16 16 N -0.85 -38.66 10.42 21.67 0.23 -38.43 16 17 Si 0.97 39.66 29.68 68.60 2.04 41.69 16 18 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 19 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 C 0.14 5.55 5.08 84.57 0.43 5.98 16 22 C 0.22 8.85 14.23 89.43 1.27 10.12 16 23 N -0.47 -20.09 18.54 20.01 0.37 -19.72 16 24 C -0.10 -3.86 10.59 22.78 0.24 -3.62 16 25 C -0.26 -5.06 10.85 67.01 0.73 -4.33 16 26 S 0.16 2.55 23.16 -56.49 -1.31 1.25 16 27 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.11 0.83 8.14 -2.39 -0.02 0.82 16 29 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.23 2.76 7.74 -2.91 -0.02 2.74 16 31 H 0.29 12.08 8.31 -92.71 -0.77 11.31 16 32 H 0.18 7.51 4.74 -2.39 -0.01 7.50 16 33 H 0.13 3.96 4.40 -2.38 -0.01 3.95 16 34 H 0.13 5.40 8.06 -2.91 -0.02 5.37 16 35 H 0.21 2.39 7.71 -2.91 -0.02 2.37 16 Total: -1.00 -71.71 326.53 4.86 -66.85 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.76 Total: 21.15 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 7.29 Total: 19.53 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -3.85 Total: -115.52 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -0.08 Total: -34.95 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.04 Total: 41.69 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.31 Total: 1.25 kcal Total: -71.71 4.86 -66.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355734943.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.921 kcal (2) G-P(sol) polarization free energy of solvation -71.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds