Wall clock time and date at job start Tue Mar 31 2020 10:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46948 * 46.74120 * 3 2 1 5 5 C 1.36942 * 120.00022 * 94.67789 * 4 3 2 6 6 H 1.07998 * 120.00084 * 37.98197 * 5 4 3 7 7 C 1.38810 * 119.99488 * 217.70471 * 5 4 3 8 8 N 1.31624 * 119.99976 * 211.87519 * 7 5 4 9 9 Si 1.86795 * 120.00386 * 31.87742 * 7 5 4 10 10 H 1.48501 * 109.47424 * 85.98363 * 9 7 5 11 11 H 1.48506 * 109.47297 * 205.98407 * 9 7 5 12 12 H 1.48501 * 109.47041 * 325.98109 * 9 7 5 13 13 C 1.46504 * 120.00194 * 274.67287 * 4 3 2 14 14 C 1.50703 * 109.47102 * 275.34967 * 13 4 3 15 15 N 1.30350 * 125.48494 * 89.69368 * 14 13 4 16 16 C 1.34146 * 108.90184 * 179.86953 * 15 14 13 17 17 C 1.35772 * 107.51585 * 0.38897 * 16 15 14 18 18 C 1.47828 * 126.58001 * 179.77425 * 17 16 15 19 19 C 1.39577 * 120.13339 * 359.73344 * 18 17 16 20 20 C 1.37935 * 119.86509 * 179.79357 * 19 18 17 21 21 C 1.38476 * 120.13430 * 0.47315 * 20 19 18 22 22 Cl 1.73590 * 119.86915 * 179.76494 * 21 20 19 23 23 C 1.38469 * 120.26349 * 359.78400 * 21 20 19 24 24 C 1.37946 * 120.13077 * 359.97438 * 23 21 20 25 25 O 1.34011 * 125.47705 * 269.99499 * 14 13 4 26 26 H 4.40637 * 5.51309 * 180.02562 * 4 1 2 27 27 H 1.08998 * 109.47601 * 286.74176 * 3 2 1 28 28 H 1.08997 * 109.47307 * 166.73557 * 3 2 1 29 29 H 0.96994 * 120.00585 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.46586 * 35.34151 * 13 4 3 31 31 H 1.08995 * 109.47388 * 155.34399 * 13 4 3 32 32 H 1.08003 * 126.23806 * 180.15016 * 16 15 14 33 33 H 1.07995 * 120.06541 * 0.03168 * 19 18 17 34 34 H 1.08000 * 119.93433 * 180.21356 * 20 19 18 35 35 H 1.08003 * 119.93730 * 179.97438 * 23 21 20 36 36 H 1.07997 * 120.06534 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.9457 -1.0059 5 6 3.4539 -0.5050 -2.2626 6 1 3.9358 0.4526 -2.3928 7 6 3.1632 -1.2919 -3.3686 8 7 3.9427 -1.2513 -4.4284 9 14 1.6658 -2.4085 -3.3529 10 1 0.4715 -1.6412 -3.7890 11 1 1.8879 -3.5475 -4.2796 12 1 1.4476 -2.9246 -1.9776 13 6 3.2820 -2.3635 -0.6674 14 6 4.6185 -2.5861 -0.0075 15 7 4.8519 -2.5113 1.2728 16 6 6.1493 -2.7713 1.4938 17 6 6.7299 -3.0065 0.2893 18 6 8.1513 -3.3309 0.0448 19 6 9.0446 -3.4155 1.1139 20 6 10.3688 -3.7228 0.8798 21 6 10.8145 -3.9375 -0.4136 22 17 12.4837 -4.3178 -0.7008 23 6 9.9341 -3.8498 -1.4787 24 6 8.6065 -3.5480 -1.2567 25 8 5.7592 -2.8872 -0.6430 26 1 -1.0498 0.0000 -0.0003 27 1 3.0095 -0.2952 0.9841 28 1 3.0089 1.0010 -0.2358 29 1 3.7394 -1.8008 -5.2014 30 1 2.4858 -2.6584 0.0160 31 1 3.2213 -2.9622 -1.5762 32 1 6.6427 -2.7866 2.4544 33 1 8.6990 -3.2445 2.1226 34 1 11.0603 -3.7919 1.7065 35 1 10.2875 -4.0179 -2.4853 36 1 7.9206 -3.4802 -2.0882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367185237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:09 Heat of formation + Delta-G solvation = 107.646153 kcal Electronic energy + Delta-G solvation = -22598.801062 eV Core-core repulsion = 19077.477773 eV Total energy + Delta-G solvation = -3521.323289 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.19971 -40.22827 -38.26620 -37.50663 -35.71736 -34.43369 -33.79722 -32.99673 -32.19473 -30.59468 -28.45166 -27.62157 -24.59406 -24.29082 -23.47662 -22.53214 -21.95270 -19.35661 -19.06074 -18.65961 -17.79668 -17.49411 -17.18821 -16.65475 -16.38222 -16.07790 -15.57539 -15.22459 -15.08759 -14.64776 -14.57594 -14.47195 -14.31082 -14.24643 -13.59579 -13.14458 -12.93517 -12.77742 -12.69804 -12.58486 -12.39164 -12.29438 -11.84822 -11.66273 -11.56070 -11.31179 -10.91848 -10.71193 -10.59788 -10.16760 -9.21715 -8.99286 -8.36841 -5.72594 -0.52488 0.20978 0.80249 1.05677 1.29363 1.41364 1.46387 1.64738 1.73470 2.00358 2.08521 2.34617 2.61759 2.87696 3.15930 3.43718 3.52159 3.75113 3.78550 3.82379 4.02870 4.16133 4.16894 4.41557 4.49523 4.53778 4.63896 4.70045 4.84235 4.87002 4.92853 5.10841 5.15392 5.25871 5.33244 5.41639 5.62008 5.76185 6.07119 6.71338 6.78718 6.88590 7.40495 7.82568 8.81231 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.019319 B = 0.003254 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.993822 B = 8601.532314 C = 9577.559336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.216 4.216 3 C 0.240 3.760 4 N -0.583 5.583 5 C -0.289 4.289 6 H 0.046 0.954 7 C 0.010 3.990 8 N -0.914 5.914 9 Si 0.908 3.092 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.235 1.235 13 C 0.229 3.771 14 C 0.190 3.810 15 N -0.500 5.500 16 C -0.013 4.013 17 C -0.044 4.044 18 C -0.016 4.016 19 C -0.079 4.079 20 C -0.098 4.098 21 C -0.037 4.037 22 Cl -0.061 7.061 23 C -0.108 4.108 24 C -0.108 4.108 25 O -0.209 6.209 26 H 0.243 0.757 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.268 0.732 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.224 0.776 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.148 0.852 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.633 -7.006 12.870 18.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.218 4.218 3 C 0.116 3.884 4 N -0.303 5.303 5 C -0.418 4.418 6 H 0.064 0.936 7 C -0.191 4.191 8 N -0.553 5.553 9 Si 0.733 3.267 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.159 1.159 13 C 0.100 3.900 14 C -0.017 4.017 15 N -0.230 5.230 16 C -0.154 4.154 17 C -0.097 4.097 18 C -0.017 4.017 19 C -0.096 4.096 20 C -0.116 4.116 21 C -0.063 4.063 22 Cl -0.032 7.032 23 C -0.126 4.126 24 C -0.127 4.127 25 O -0.095 6.095 26 H 0.260 0.740 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.125 0.875 31 H 0.090 0.910 32 H 0.240 0.760 33 H 0.187 0.813 34 H 0.189 0.811 35 H 0.165 0.835 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.385 -6.928 13.025 18.042 hybrid contribution -0.270 -0.380 -1.563 1.631 sum 10.115 -7.308 11.461 16.944 Atomic orbital electron populations 1.25602 0.96667 1.00623 1.01083 1.24912 0.96404 1.00528 1.00005 1.18197 0.82764 0.94500 0.92942 1.44097 1.72781 1.03671 1.09747 1.18529 1.35165 1.05771 0.82294 0.93649 1.25970 0.98777 0.99492 0.94813 1.70106 1.35813 1.41749 1.07674 0.86476 0.82270 0.78513 0.79431 1.21351 1.21783 1.15874 1.20151 0.85226 0.86729 0.97858 1.28450 0.89876 0.96379 0.87033 1.70364 1.17479 1.20254 1.14871 1.23883 0.89487 1.02712 0.99283 1.21892 0.90188 1.09685 0.87977 1.17918 0.86871 1.01850 0.95087 1.21290 0.91550 0.97804 0.99006 1.21267 0.95865 0.98687 0.95760 1.21188 0.86116 1.03739 0.95302 1.98376 1.15661 1.92589 1.96572 1.21083 0.91791 0.99898 0.99846 1.21283 0.96066 0.98879 0.96450 1.84567 1.18542 1.66823 1.39610 0.74020 0.89375 0.90354 0.92234 0.87520 0.91033 0.75970 0.81300 0.81116 0.83456 0.86487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.21 19.25 74.32 1.43 -5.78 16 2 C -0.22 -8.19 13.67 31.12 0.43 -7.76 16 3 C 0.24 9.52 6.17 84.57 0.52 10.05 16 4 N -0.58 -27.05 1.99 -716.91 -1.43 -28.47 16 5 C -0.29 -15.95 9.78 84.03 0.82 -15.13 16 6 H 0.05 2.79 8.06 -2.91 -0.02 2.76 16 7 C 0.01 0.58 5.04 84.86 0.43 1.01 16 8 N -0.91 -54.71 13.97 21.65 0.30 -54.41 16 9 Si 0.91 42.89 26.49 68.60 1.82 44.71 16 10 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.24 -10.04 5.49 99.48 0.55 -9.50 16 13 C 0.23 9.76 4.47 85.63 0.38 10.14 16 14 C 0.19 7.88 7.90 88.33 0.70 8.57 16 15 N -0.50 -18.35 11.27 -302.85 -3.41 -21.77 16 16 C -0.01 -0.40 11.29 83.77 0.95 0.54 16 17 C -0.04 -1.50 7.07 24.24 0.17 -1.33 16 18 C -0.02 -0.45 5.87 -20.09 -0.12 -0.57 16 19 C -0.08 -1.48 9.57 22.52 0.22 -1.26 16 20 C -0.10 -1.61 9.81 22.25 0.22 -1.39 16 21 C -0.04 -0.73 6.32 22.38 0.14 -0.59 16 22 Cl -0.06 -1.07 28.95 -2.72 -0.08 -1.15 16 23 C -0.11 -2.49 9.81 22.26 0.22 -2.28 16 24 C -0.11 -3.10 9.73 22.52 0.22 -2.88 16 25 O -0.21 -8.97 10.59 -7.86 -0.08 -9.06 16 26 H 0.24 5.59 7.80 -4.43 -0.03 5.55 16 27 H 0.09 3.19 8.11 -2.39 -0.02 3.17 16 28 H 0.08 3.11 8.00 -2.39 -0.02 3.09 16 29 H 0.27 15.17 8.31 -92.71 -0.77 14.39 16 30 H 0.11 4.06 8.09 -2.39 -0.02 4.04 16 31 H 0.07 3.24 4.45 -2.39 -0.01 3.23 16 32 H 0.22 4.33 7.30 -2.91 -0.02 4.31 16 33 H 0.17 2.05 7.04 -2.91 -0.02 2.02 16 34 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.12 3.85 7.94 -2.91 -0.02 3.83 16 Total: -1.00 -68.03 339.95 4.79 -63.24 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.95 Total: 15.57 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 6.72 Total: -8.66 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -4.54 Total: -104.65 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.08 Total: -9.06 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.82 Total: 44.71 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -68.03 4.79 -63.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367185237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.889 kcal (2) G-P(sol) polarization free energy of solvation -68.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds